NO01G02440, NO01G02440 (gene) Nannochloropsis oceanica

Overview
NameNO01G02440
Unique NameNO01G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1023
Alignment locationchr1:631904..632926 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:631904..632926 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02440 vs. NCBI_GenBank
Match: EWM29119.1 (hypothetical protein Naga_100007g75 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.600e-37
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 0 
Query:   92 VTLDDIKGLSKEECLCLFRLLRPATLQQLHGEWQGEILAMGLLYPLAYLFWHWRLGRGWWLGKGIDAESRQGYNTFYNHGITTRNRRFEVFMGPSAYGWEEEKEGQEGETERRVEVGRHKQSE-IGVDEGAGNDGVPHERKGS 234
            +T DDIKGLSKEECL LFRLL PATLQQLHGEWQGEILAMG+ YPLAYL WHWRLGRGWWLGKG+D  +  GYN FYNHGIT+R+RRF+ + G SAY  E   +        R+ V +++ +  + V+  A +  V   RK S
Sbjct:    1 MTADDIKGLSKEECLFLFRLLPPATLQQLHGEWQGEILAMGMSYPLAYLLWHWRLGRGWWLGKGVDQATGCGYNVFYNHGITSRSRRFDAYTGLSAY--EARTKDPRDTRHSRLYVCKNQANRYLAVERAAEDKDVNSMRKWS 141
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BLAST of NO01G02440 vs. NCBI_GenBank
Match: PKN32828.1 (hypothetical protein CVU61_16290 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19])

HSP 1 Score: 65.9 bits (159), Expect = 2.900e-7
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0 
Query:  269 LASGGESLHLVYAPYNDGFFHRMHEEVRRVHDGLFLGFGSPGGLRGRTPFNSIPFLLVAPKAPLKQWDQE 339
            L  G ES HL Y+PYN G  H MH+E+RR++D + +G G  G   G    N  PFL++ P AP    D+E
Sbjct:  152 LIDGKESFHLDYSPYNSGAVHSMHDELRRINDHIMIGMGYMG--LGGGSINPAPFLVIGPSAPWVGPDKE 219
The following BLAST results are available for this feature:
BLAST of NO01G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29119.11.600e-3759.44hypothetical protein Naga_100007g75 [Nannochlorops... [more]
PKN32828.12.900e-744.29hypothetical protein CVU61_16290 [Deltaproteobacte... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008089NSK008089Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02440.1NO01G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576626gene_234Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g75gene1450Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02440.1NO01G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02440 ID=NO01G02440|Name=NO01G02440|organism=Nannochloropsis oceanica|type=gene|length=1023bp
ATGTATGACCGTCTGATTCTAATCGCTGCCGTGCTGATCCCGCTGCTGCC
CTCAATTATCGTGGTTATGGCCATGTGCTTTTTCCTCCATTCCCGACATT
CCTTACGAAGGCGCAAATGTTCCGGCGAAAAAATTATTTTAGACGCCACC
TGCAGTCAGCAGGGTCCCGATTACATCAGCGTCCACCCTGGCAGCGCCGC
CACTACCACTACCCGCCTTCATCGCGGCCGCTTCTGGCCGTTGGAACGCA
AGGGTAAAGCCAGCCTGGAAGATGTTACACTGGACGACATCAAGGGTCTG
AGCAAGGAAGAATGCTTGTGTCTATTCAGGCTTCTCCGTCCCGCGACTTT
GCAGCAGTTGCATGGCGAATGGCAAGGTGAAATATTGGCGATGGGTCTCC
TTTATCCCTTGGCGTACTTATTCTGGCATTGGCGACTGGGGCGGGGGTGG
TGGTTGGGCAAGGGCATTGATGCGGAGAGCAGGCAGGGCTACAACACATT
TTACAATCACGGTATCACCACGCGTAATAGGCGGTTTGAAGTGTTCATGG
GCCCCAGTGCCTATGGGTGGGAAGAAGAGAAAGAAGGACAGGAGGGAGAG
ACCGAGAGGCGTGTGGAAGTAGGTAGACACAAACAAAGCGAGATAGGCGT
CGATGAGGGTGCTGGAAATGATGGAGTTCCACACGAACGGAAGGGCAGTA
GGGTTCAGCAATTTGAAAGTAGATCAGACAGATGCCACTGCGCTGGTAGT
AGTCGCATTGGTGTAGAAGAGCGGAGAGGCACTCGCAACAGGAGCAGCAC
GGACCTTGCCAGTGGTGGGGAGTCGCTGCATTTAGTGTACGCGCCGTACA
ACGACGGATTCTTTCATCGAATGCACGAAGAGGTGCGACGCGTGCACGAT
GGTCTCTTTCTGGGCTTTGGCTCTCCCGGAGGTTTAAGGGGAAGGACGCC
TTTTAACAGCATACCGTTTCTGCTTGTCGCGCCTAAGGCCCCCCTCAAGC
AGTGGGATCAGGAGAGGAATTAA
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protein sequence of NO01G02440.1

>NO01G02440.1-protein ID=NO01G02440.1-protein|Name=NO01G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MYDRLILIAAVLIPLLPSIIVVMAMCFFLHSRHSLRRRKCSGEKIILDAT
CSQQGPDYISVHPGSAATTTTRLHRGRFWPLERKGKASLEDVTLDDIKGL
SKEECLCLFRLLRPATLQQLHGEWQGEILAMGLLYPLAYLFWHWRLGRGW
WLGKGIDAESRQGYNTFYNHGITTRNRRFEVFMGPSAYGWEEEKEGQEGE
TERRVEVGRHKQSEIGVDEGAGNDGVPHERKGSRVQQFESRSDRCHCAGS
SRIGVEERRGTRNRSSTDLASGGESLHLVYAPYNDGFFHRMHEEVRRVHD
GLFLGFGSPGGLRGRTPFNSIPFLLVAPKAPLKQWDQERN*
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Synonyms
Publications