NO01G02380, NO01G02380 (gene) Nannochloropsis oceanica

Overview
NameNO01G02380
Unique NameNO01G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length416
Alignment locationchr1:615328..615743 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:615328..615743 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
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BLAST of NO01G02380 vs. NCBI_GenBank
Match: EWM29219.1 (hypothetical protein Naga_100007g87 [Nannochloropsis gaditana])

HSP 1 Score: 144.8 bits (364), Expect = 1.400e-31
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 0 
Query:    1 MTIESVSELQAAASLFGSVCVDSNLAFYEQKKKDPHPLACEAASKDVKACWESLRAKIKATSEGPFQSYAQCLQTTGNNLKKCAELHDQLVKAFEE 97
            M IES +ELQA++SLFG  CVD+NLAFYEQKKK+P P ACEAA KDV ACWE+LRAKIKA SE  FQ+YA+CL+ TGNNLKKCA LH+ L+K+  E
Sbjct:    1 MPIESAAELQASSSLFGKECVDANLAFYEQKKKNPDPQACEAAGKDVLACWETLRAKIKAKSEASFQAYAECLEMTGNNLKKCANLHEDLLKSVSE 96
The following BLAST results are available for this feature:
BLAST of NO01G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29219.11.400e-3170.83hypothetical protein Naga_100007g87 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008080NSK008080Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02380.1NO01G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g87gene1442Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02380.1NO01G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02380 ID=NO01G02380|Name=NO01G02380|organism=Nannochloropsis oceanica|type=gene|length=416bp
ATGACGATAGAGAGTGTGTCAGAGCTGCAGGCGGCGGCGTCGCTCTTCGG
GAGCGTGTGCGTAGACTCCAACTTGGCTTTTTACGAGCAGAAGAAGAAAG
ACCCCCACCCGTTGGCGTGCGAGGCGGCCAGCAAGGACGTCAAGGCTTGT
TGGGAGTCCTTgtaagtatagatggtgtatcaagatatgaaggaaagagc
ttctatccctctttatgataatctcttctaccacagtaatatgtgacgta
aatgctctttttcccccttctcgatagGAGAGCGAAGATCAAAGCCACGT
CCGAAGGGCCTTTCCAGTCCTACGCCCAGTGTCTGCAGACAACCGGGAAC
AACCTCAAGAAATGTGCTGAATTGCACGACCAGCTTGTGAAAGCCTTTGA
AGAGGCCACGCAGTGA
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protein sequence of NO01G02380.1

>NO01G02380.1-protein ID=NO01G02380.1-protein|Name=NO01G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MTIESVSELQAAASLFGSVCVDSNLAFYEQKKKDPHPLACEAASKDVKAC
WESLRAKIKATSEGPFQSYAQCLQTTGNNLKKCAELHDQLVKAFEEATQ*
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Synonyms
Publications