NO01G02350, NO01G02350 (gene) Nannochloropsis oceanica

Overview
NameNO01G02350
Unique NameNO01G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr1:605561..607485 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:605561..607485 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02350 vs. NCBI_GenBank
Match: EWM29125.1 (hypothetical protein Naga_100007g89 [Nannochloropsis gaditana])

HSP 1 Score: 447.6 bits (1150), Expect = 5.500e-122
Identity = 268/531 (50.47%), Postives = 351/531 (66.10%), Query Frame = 0 
Query:    1 MQVQATSPGGPSNLLGGFKERLGSLECRRSSPSTPLSPPSTSSQEDQPPMRMCMPSQTGAAFPSQHKHHIQSPGQLKLQGGEEEDVKVGEEAAQSTVEELERGMVGEAQVMEELLRVRESFICKGWGELLGSLKAGKSLVILAREEERRAQLLKNKPQQQDGHLHALFQAAEGDIKVMVKAFLREHAQQELAQEELLRGKTKVEALLDTLKEAQIRLVKEEEIVAGQQGEQXXXXXXXXXXXXXXXXXXXXXXLQAAKAQNDLAETRILEWQAKLNQLEALGVAEREVMEVDDLRSATAQDEIETLGEAARLRKQAETLCAVLDMLQGLYRVTVTVLDEAEAGPSDMVLRLAYPSKHALEMTLSMRGQAIQLLHARLEMPLMQQRRKSVATAEAQRLMMNQVDNLVTVAQGLPAPQDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEGMDELTVTFAEGVVASFSLLSGYPNMPGSVRIAGLVGVGGWKDCELAVTSRCLNGLGLDSLTALIDALHERIVELDKKA 532
            MQVQ  SP  P++++  ++++L S+E R  +     +P  +   ED+  +   + SQ G        HH +S   + L   + +  ++  EAA    E++E G+  E QV++ELL+ RE+F+C+ WG+LLG LKAGKSL +  R+EE R+   +NK QQ++  L  LF+ AEGDI  +V+A + +H +Q   ++E+L  K  VE LL+TL+  Q  L   EE ++    ++                      ++  +A+N  A  R+ E Q+ L  L+   +A+ E         A  + E E L EA RLR  AE L  VL+ LQGLY V VTV+D ++A P +MVLR+ YPS+HALE+TLS   + +QLLHARLE+P++QQRR+S+AT+E QRLMMNQVDNLVTVAQGL  P DLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNE MDELTVT+AEGVVASF LL GYP MPGSVRI GLVGVGGWKD +LA+TSR LNGLGL+SLTAL+DALHERI E D KA
Sbjct:    1 MQVQTVSP-SPTSIVMDYRKQLNSIEARLMN-----APLHSGRSEDKSEL---LASQVG--------HHHESSLPITLPVSQTKSSRM--EAAVGASEDMECGITHEEQVVDELLQARETFMCQRWGDLLGQLKAGKSLGVTVRQEEERSYHFENKFQQEEHRLRGLFETAEGDIHGLVRATVEKHHEQARIRKEILERKKSVECLLNTLENIQGSLSLGEEALSKLDEDE-----KAEEQDGQNQIRVMEAAIEDIRAKNCDARKRVSELQSTLEVLQTAALADGEEAS-SRADPALVEQEAEVLAEAGRLRGHAEDLQKVLETLQGLYNVAVTVVDGSDAKPGEMVLRVGYPSQHALEVTLSTSDETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERIAESDSKA 506
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BLAST of NO01G02350 vs. NCBI_GenBank
Match: CBN79122.1 (hypothetical protein Esi_0192_0025 [Ectocarpus siliculosus])

HSP 1 Score: 75.5 bits (184), Expect = 5.600e-10
Identity = 39/129 (30.23%), Postives = 64/129 (49.61%), Query Frame = 0 
Query:  400 NQVDNLVTVAQGLPAPQDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEGMDELTVTFAEGVVASFSLLSGYPNMPGSVRIAGLVGVGGWKDCELAVTSRCLNGLGLDSLTALIDALHERIVELD 529
            ++++ +   A  LPAPQ+L  L  E         V ++ +R++ +RY+  +     E+TVT   G+VA F L   YP + G   +  L GVGGW   E     R +N + L +L A +D L   +  ++
Sbjct:  377 SELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRPPSREVTVTMGAGIVACFRLAVDYPKVVGGAEVVALTGVGGWSAHETEQLCRRVNDMALPTLMATMDVLEAEVEAME 505
The following BLAST results are available for this feature:
BLAST of NO01G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29125.15.500e-12250.47hypothetical protein Naga_100007g89 [Nannochlorops... [more]
CBN79122.15.600e-1030.23hypothetical protein Esi_0192_0025 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008078NSK008078Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02350.1NO01G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576595gene_224Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g89gene1440Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02350.1NO01G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02350 ID=NO01G02350|Name=NO01G02350|organism=Nannochloropsis oceanica|type=gene|length=1925bp
ACAGATCTCACAGCCATGCAAGTGCAGGCAACCTCGCCAGGCGGACCTTC
CAACCTTCTCGGAGGGTTCAAGGAGAGATTGGGAAGCCTCGAGTGCCGCC
GGTCCTCCCCCTCGACCCCTTTATCTCCACCGTCAACATCGTCGCAAGAG
GACCAGCCCCCGATGCGCATGTGTATGCCCTCCCAGACCGGTGCTGCTTT
CCCTTCGCAGCACAAGCACCACATTCAGTCTCCGGGACAGCTCAAGCTGC
AGGGGGGGGAGGAGGAAGATGTGAAGGTGGGGGAGGAAGCAGCGCAGTCG
ACCGTGGAGGAGCTGGAGCGTGGCATGGTGGGCGAGGCGCAAGTGATGGA
GGAACTGCTACGGGTTCGTGAATCATTTATTTGCAAAGGATGGGGGGAGC
TGCTCGGAAGCCTCAAGGCAGGCAAGTCGCTGGTGATATTGGCGAGGGAA
GAGGAGAGGCGAGCCCAGCTGCTAAAAAACAAGCCGCAACAGCAGGACGG
CCACTTGCATGCTCTGTTTCAGGCTGCGGAGGGCGACATTAAAGTCATGG
TGAAAGCTTTTCTGCGGGAACATGCGCAGCAAGAGCTGGCTCAAGAGGAG
CTGCTGCGCGGGAAGACAAAGGTGGAAGCCTTGCTGGACACTTTGAAGGA
AGCGCAAATCCGCTTGGTCAAGGAGGAGGAAATTGTGGCGGGACAGCAGG
GCGAACAGGACGAGGAAGAGGAATTGGTCGCGGAGCAAGAGTGTCAAGAA
CAGGTACAGCAATGTGAGGCAGCACTGCAAGCGGCCAAGGCCCAGAACGA
CTTGGCGGAGACGCGTATCCTGGAATGGCAAGCCAAGCTGAACCAGCTTG
AGGCTCTGGGGGTGGCCGAACGAGAGGTGATGGAGGTGGACGACTTACGT
TCTGCCACGGCACAGGACGAGATCGAGACGCTCGGTGAGGCAGCGCGGCT
CCGCAAGCAGGCAGAGACGCTGTGCGCGGTGCTGGATATGTTACAAGGCC
TATACCGCGTGACGGTGACGGTGCTGGACGAAGCCGAGGCGGGGCCGAGC
GATATGGTCCTCCGGCTGGCATATCCCTCCAAGCACGCCCTAGAGATGAC
GCTTTCGATGAGGGGTCAAGCGATCCAGCTGCTGCATGCTCGTCTGGAGA
TGCCCCTCATGCAGCAACGGCGGAAGTCGGTGGCCACGGCTGAGGCGCAG
CGCCTGATGATGAATCAGGTGGACAACCTCGTAACAGTAGCGCAAGGCTT
GCCAGCACCCCAGGACCTTCTGTTCCTGGCGCGGGAGGTGGGCTGGATGG
TTGCTTCGCGGGGCGTTGCGAAACAGGAGATCCGCGAGCTTATGAAAAGG
TACATCGTCAAACACAACGAGGGCATGGATGAGCTGACGGTCACATTCGC
CGAGGGCGTTGTCGCCTCCTTCTCCCTTCTGTCCGGCTACCCTAATATGC
CGGGCAGTGTACGCATCGCGGGCTTGGTGGGCGTGGGCGGCTGGAAGGAC
TGCGAGCTGGCTGTCACGAGCCGCTGCTTGAATGGGCTGGGCTTGGACTC
ACTGACGGCCTTGATTGATGCCCTGCACGAGCGCATCGTGGAGCTGGACA
AGAAAGCTGAGTAAGAGAGCTGCGTGGGGATCAAGAAGAAGAAAGACACA
GAGAAGGATGGGAGTGGGTGAGGGAGAGTGCAGATAAAATGGTGTGGGGG
TTTATGATGGAATACTGTGTAGGAAAAAACGAGCAAGGAAAGGACCCGGA
ACAAGTTGAAGAAAAGAAAACTGAACAAATAATAAAAAACGAACAACTGT
GGGTGATTCTCAGAGGGCTGAGCGATTGGAAAGTGAATTGAGTGGCGTGC
GGGAGCAGTTTAGAGGGGGAAATAACAAATGAGCAACATATGACTGTGCC
AGAAACGTAGGACAAGGATTACAGA
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protein sequence of NO01G02350.1

>NO01G02350.1-protein ID=NO01G02350.1-protein|Name=NO01G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MQVQATSPGGPSNLLGGFKERLGSLECRRSSPSTPLSPPSTSSQEDQPPM
RMCMPSQTGAAFPSQHKHHIQSPGQLKLQGGEEEDVKVGEEAAQSTVEEL
ERGMVGEAQVMEELLRVRESFICKGWGELLGSLKAGKSLVILAREEERRA
QLLKNKPQQQDGHLHALFQAAEGDIKVMVKAFLREHAQQELAQEELLRGK
TKVEALLDTLKEAQIRLVKEEEIVAGQQGEQDEEEELVAEQECQEQVQQC
EAALQAAKAQNDLAETRILEWQAKLNQLEALGVAEREVMEVDDLRSATAQ
DEIETLGEAARLRKQAETLCAVLDMLQGLYRVTVTVLDEAEAGPSDMVLR
LAYPSKHALEMTLSMRGQAIQLLHARLEMPLMQQRRKSVATAEAQRLMMN
QVDNLVTVAQGLPAPQDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKH
NEGMDELTVTFAEGVVASFSLLSGYPNMPGSVRIAGLVGVGGWKDCELAV
TSRCLNGLGLDSLTALIDALHERIVELDKKAE*
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Synonyms
Publications