NO01G02320, NO01G02320 (gene) Nannochloropsis oceanica

Overview
NameNO01G02320
Unique NameNO01G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1273
Alignment locationchr1:601813..603085 -

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Properties
Property NameValue
DescriptionNucleoside diphosphate kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:601813..603085 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process
GO:0006183GTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004550nucleoside diphosphate kinase activity
GO:0016301kinase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR036850NDK-like_dom_sf
IPR034907NDK-like_dom
IPR001564Nucleoside_diP_kinase
Homology
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_008873920.1 (hypothetical protein H310_09595 [Aphanomyces invadans] >ETV97711.1 hypothetical protein H310_09595 [Aphanomyces invadans])

HSP 1 Score: 236.5 bits (602), Expect = 6.600e-59
Identity = 111/147 (75.51%), Postives = 122/147 (82.99%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            ERTYIMIKPDGVQR LVGEII RFE+KGF+LVALK +   K  L  HY DLA K FF GL+ YM+SGPV+AMVW+G N VKEGRKMLGATKPSDSAPGTIRGDFA++VGRNICHGSDSVESA  EI LWF EG+ EWNA   +WVYE
Sbjct:    3 ERTYIMIKPDGVQRNLVGEIIKRFEQKGFQLVALKMVRPGKAHLEAHYADLAGKGFFNGLIEYMNSGPVVAMVWQGFNVVKEGRKMLGATKPSDSAPGTIRGDFAIEVGRNICHGSDSVESANHEIALWFPEGITEWNATRNAWVYE 149
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: OQR86868.1 (nucleoside disphosphate kinase [Achlya hypogyna])

HSP 1 Score: 234.2 bits (596), Expect = 3.300e-58
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0 
Query:   32 MSTERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            M+ ERTYIMIKPDGVQR LVGEII RFE+KGF+L+A+K +   K+ L  HY DLA K FFAGL+ YM+SGPV+AMVW G N VKEGRKMLGATKPS+SAPGTIRGDFA++VGRNICHGSD+VESA+ EI LWF EG+ EWN +  +WVYE
Sbjct:    1 MAMERTYIMIKPDGVQRNLVGEIIKRFEQKGFQLLAMKLVRPGKEHLEAHYADLAGKGFFAGLIEYMTSGPVVAMVWGGANVVKEGRKMLGATKPSESAPGTIRGDFAIEVGRNICHGSDAVESAEHEIALWFPEGVTEWNPSRNAWVYE 150
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_009836599.1 (hypothetical protein H257_11392 [Aphanomyces astaci] >ETV74086.1 hypothetical protein H257_11392 [Aphanomyces astaci])

HSP 1 Score: 233.4 bits (594), Expect = 5.500e-58
Identity = 110/147 (74.83%), Postives = 121/147 (82.31%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            ERTYIMIKPDGVQR LVGEII RFE+KGF+LVALK     K  L  HY DL+ K FF GL+ YM+SGPVIAMVW+G N VKEGRKMLGATKPSDSAPGTIRGD+A++VGRNICHGSDSVESA  EI LWF EG+ EWNA   +WVYE
Sbjct:    3 ERTYIMIKPDGVQRNLVGEIIKRFEQKGFQLVALKLTQPGKAHLEAHYADLSSKGFFNGLIEYMNSGPVIAMVWQGFNVVKEGRKMLGATKPSDSAPGTIRGDYAVEVGRNICHGSDSVESANHEIALWFPEGITEWNATRNTWVYE 149
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: GAY02783.1 (nucleoside diphosphate kinase B, partial [Pythium insidiosum])

HSP 1 Score: 231.1 bits (588), Expect = 2.800e-57
Identity = 107/147 (72.79%), Postives = 123/147 (83.67%), Query Frame = 0 
Query:   32 MSTERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSW 179
            M+ ERTYIM+KPDGVQR LVGEII RFE KGFKLVALK     K  L +HY DLA KPFF GL++YM+SGPV+AMVWEG+N V EGRKMLGATKPS+SAPGTIRGDF ++VGRN+CHGSDSVESA +EI LWF EG+ EWNA++  W
Sbjct:    1 MARERTYIMVKPDGVQRHLVGEIIKRFEAKGFKLVALKLTAPGKAHLEKHYADLAGKPFFPGLISYMTSGPVVAMVWEGVNVVAEGRKMLGATKPSESAPGTIRGDFCVEVGRNVCHGSDSVESANKEIALWFPEGITEWNASDDDW 147
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_016276682.1 (nucleoside-diphosphate kinase [Rhodotorula toruloides NP11] >EMS25563.1 nucleoside-diphosphate kinase [Rhodotorula toruloides NP11] >CDR47658.1 RHTO0S15e00298g1_1 [Rhodotorula toruloides])

HSP 1 Score: 229.9 bits (585), Expect = 6.100e-57
Identity = 104/148 (70.27%), Postives = 128/148 (86.49%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYEK 183
            E+TYIMIKPDGVQRGLVGEII+RFE++G+KLVA+K  + S + L +HY+DL +KPFF GLV+YM+SGPV+AMVWEG +AVK GR +LGAT P  SAPGTIRGDFA+DVGRN+CHGSD+VESA++EI LWF EGLA+W +   +WVYEK
Sbjct:    2 EQTYIMIKPDGVQRGLVGEIISRFEKRGYKLVAMKLASPSVEHLEKHYEDLKEKPFFKGLVSYMASGPVVAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDAVESAKKEIALWFPEGLAQWTSAQQTWVYEK 149
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_001742597.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ92835.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 229.6 bits (584), Expect = 8.000e-57
Identity = 106/148 (71.62%), Postives = 123/148 (83.11%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEG-LAEWNANNYSWVYE 182
            ERTYIMIKPDGVQRGLVGEI+ARFE+KGFKL ALK   A+++LL +HY DL  K FF GLV+YM+SGPV+ MVWEG N VK GRK+LG T+P DS PGTIRGDF ++VGRNICHGSDSVESA++EI LWFGEG +AEW     SW+YE
Sbjct:    5 ERTYIMIKPDGVQRGLVGEIVARFEKKGFKLCALKLKQATEELLEQHYADLKGKKFFPGLVSYMASGPVVCMVWEGTNVVKSGRKLLGETRPDDSLPGTIRGDFCIEVGRNICHGSDSVESAEKEIALWFGEGEVAEWTQVTESWIYE 152
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_008608584.1 (nucleoside diphosphate kinase B [Saprolegnia diclina VS20] >EQC38257.1 nucleoside diphosphate kinase B [Saprolegnia diclina VS20])

HSP 1 Score: 228.8 bits (582), Expect = 1.400e-56
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            ERTYIMIKPDGVQR LVGEII RFE KGF+L+A+K +   K+ L  HY DLA K FF GL+ YM+SGPV+AMVW G NAVKEGRKMLGATKPS+SAPGTIRGDFA++VGRNICHGSD+VESA+ EI LWF EG+ EW+ +  +WVYE
Sbjct:    2 ERTYIMIKPDGVQRNLVGEIIKRFEAKGFQLLAMKLVRPGKEHLEAHYADLAGKGFFNGLIEYMNSGPVVAMVWGGANAVKEGRKMLGATKPSESAPGTIRGDFAIEVGRNICHGSDAVESAEHEIALWFPEGVCEWSPSRNAWVYE 148
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_005836462.1 (hypothetical protein GUITHDRAFT_93413, partial [Guillardia theta CCMP2712] >EKX49482.1 hypothetical protein GUITHDRAFT_93413, partial [Guillardia theta CCMP2712])

HSP 1 Score: 228.4 bits (581), Expect = 1.800e-56
Identity = 108/152 (71.05%), Postives = 125/152 (82.24%), Query Frame = 0 
Query:   32 MSTERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWF-GEGLAEWNANNYSWVYEK 183
            M  ERT+IMIKPDGVQRGLV +II RFE+KGFKLV LK + AS+DLL EHY DL+ KPFFAGLV YM SGPV+ MVWEG   VK GR +LGATKPS+SAPG+IRGDF +DVGRNICHGSD+VESA +EI LWF  E L +W +++ SWVYEK
Sbjct:    1 MPRERTFIMIKPDGVQRGLVAKIIERFEQKGFKLVGLKFMQASEDLLKEHYADLSSKPFFAGLVEYMKSGPVVPMVWEGDGVVKAGRTLLGATKPSESAPGSIRGDFCIDVGRNICHGSDAVESANKEIALWFKPEELVDWKSHSESWVYEK 152
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_012205217.1 (nucleoside diphosphate kinase B [Saprolegnia parasitica CBS 223.65] >KDO24081.1 nucleoside diphosphate kinase B [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 228.4 bits (581), Expect = 1.800e-56
Identity = 105/147 (71.43%), Postives = 123/147 (83.67%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            ERTYIMIKPDGVQR LVGEII RFE+KGF+L+A+K +   K+ L  HY DLA K FF GL+ YM+SGPV+AMVW G N VKEGRKMLGATKPS+SAPGTIRGD+A++VGRNICHGSD+VESA+ EI LWF EG+ EWN +  +WVYE
Sbjct:    2 ERTYIMIKPDGVQRNLVGEIIKRFEQKGFQLLAMKLVRPGKEHLQAHYADLAGKGFFNGLIEYMNSGPVVAMVWGGANVVKEGRKMLGATKPSESAPGTIRGDYAVEVGRNICHGSDAVESAEHEIALWFPEGVCEWNPSRNAWVYE 148
[Close]
BLAST of NO01G02320 vs. NCBI_GenBank
Match: XP_024580384.1 (nucleoside diphosphate kinase 2 [Plasmopara halstedii] >CEG44015.1 nucleoside diphosphate kinase 2 [Plasmopara halstedii])

HSP 1 Score: 226.5 bits (576), Expect = 6.800e-56
Identity = 107/150 (71.33%), Postives = 120/150 (80.00%), Query Frame = 0 
Query:   32 MSTERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            M+ ERTYIM+KPDGVQR LVGEII RFE KG+KLVALK    S D L  HY DLA +PFF  L+ YMSSGPV  MVWEG N V EGRKMLGATKPS+SA GTIRGDF +DVGRN+CHGSDSV+SA +EI LWF EGL EW++N+  WVYE
Sbjct:    1 MARERTYIMVKPDGVQRHLVGEIIKRFETKGYKLVALKLARPSIDHLEAHYADLAGRPFFPSLIAYMSSGPVACMVWEGNNVVLEGRKMLGATKPSESALGTIRGDFCVDVGRNVCHGSDSVDSANKEISLWFPEGLVEWSSNDDEWVYE 150
The following BLAST results are available for this feature:
BLAST of NO01G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008873920.16.600e-5975.51hypothetical protein H310_09595 [Aphanomyces invad... [more]
OQR86868.13.300e-5872.00nucleoside disphosphate kinase [Achlya hypogyna][more]
XP_009836599.15.500e-5874.83hypothetical protein H257_11392 [Aphanomyces astac... [more]
GAY02783.12.800e-5772.79nucleoside diphosphate kinase B, partial [Pythium ... [more]
XP_016276682.16.100e-5770.27nucleoside-diphosphate kinase [Rhodotorula toruloi... [more]
XP_001742597.18.000e-5771.62hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_008608584.11.400e-5672.11nucleoside diphosphate kinase B [Saprolegnia dicli... [more]
XP_005836462.11.800e-5671.05hypothetical protein GUITHDRAFT_93413, partial [Gu... [more]
XP_012205217.11.800e-5671.43nucleoside diphosphate kinase B [Saprolegnia paras... [more]
XP_024580384.16.800e-5671.33nucleoside diphosphate kinase 2 [Plasmopara halste... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008074NSK008074Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02320.1NO01G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576587gene_220Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g91gene1438Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02320.1NO01G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02320 ID=NO01G02320|Name=NO01G02320|organism=Nannochloropsis oceanica|type=gene|length=1273bp
TGCCACTGACTTCACTGTTCTCTCACCACATGCGACTCGCCCTGGCCACA
TAAACTGATTCTTCCTGTCTCCTGGGCAGTTTCTTCAATTTCTACCGCGC
TTGTCGCGTACTCGCTTTACGTCTACCATGCTCTGTAGACAGACATTAAG
TTCACCCTCTATGCGGCTGACAGGGACCATATACAGTCCACATGATCAGA
CCGGCTGTCCGCTCAAACACTGACCCAAACGCGTTGCCCCACCCCGCCCT
CTCGATGCACAGGCACACAGGCATTAAGCACACCATGAGCACCGAACGCA
CGTACATTATGATAAAACCCGATGGTGTTCAACGGGGCTTGGTCGGAGAA
ATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCGCTCAAGTC
GCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTACCAGGATTTGGCTG
ACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGAGCTCGGGCCCTGTC
ATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGCCGCAAGgt
atgcatcgggtcattctctcttcagttctcagctttcgatccttatcact
cttgctctattttgatatatcctcttttgctctcatcactgtttgattcc
gccttggctgatccctcttccgttctcatctttcactcagATGCTTGGTG
CCACCAAGCCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCC
CTTGACgtaagtgtgctttgatatcttcgattgtctgtgtatcgtcccat
cttgatacattttgtgcaaacctctcactttacaaccgaacgtatttttt
cgacatccctgtagGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTC
GAGTCTGCTCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGA
ATGGAATGCAAACAACTACTCTTGGGTGTACGAGAAGTAAAGTGGCCGGA
CCTTTCAATCTCGTCACTGTCGTCGACGACGTAATCCGCAGCCGGTTCTC
AGGAAAGAACTGAGTAGAAACTTAAGAGCCCACAATGGAGCGTGTCCTCT
GGAATGAAAGCACGGGGAAGAGGGAGTTGGAGGTTTGTTTGACTGGGTTA
AAGCTTAAGGTCGGAGTGAAAACGGAAGACGGCAACTCGCTCCTAAAGCA
GGGAGATGATAGGCGCGGTGAGGGACTAAGAAAACTCGATTTGAAAACAA
GGCATGACAGTATCCCGAGCCAG
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protein sequence of NO01G02320.1

>NO01G02320.1-protein ID=NO01G02320.1-protein|Name=NO01G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MIRPAVRSNTDPNALPHPALSMHRHTGIKHTMSTERTYIMIKPDGVQRGL
VGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSS
GPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGS
DSVESAQREIGLWFGEGLAEWNANNYSWVYEK*
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Synonyms
Publications