NO01G02310, NO01G02310 (gene) Nannochloropsis oceanica

Overview
NameNO01G02310
Unique NameNO01G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1625
Alignment locationchr1:600106..601730 +

Link to JBrowse

Properties
Property NameValue
DescriptionDiaminopimelate decarboxylase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:600106..601730 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008836diaminopimelate decarboxylase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR029066PLP-binding_barrel
IPR009006Ala_racemase/Decarboxylase_C
IPR022644De-COase2_N
IPR022643De-COase2_C
IPR000183Orn/DAP/Arg_de-COase
IPR002986DAP_deCOOHase_LysA
Homology
BLAST of NO01G02310 vs. NCBI_GenBank
Match: PAW85260.1 (diaminopimelate decarboxylase [Opitutae bacterium Tous-C10FEB])

HSP 1 Score: 533.1 bits (1372), Expect = 9.000e-148
Identity = 261/409 (63.81%), Postives = 315/409 (77.02%), Query Frame = 0
Query:   67 FLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNE 476
            FL+P    A+A   GTP YVYD ++L   A   LAFPNAFGLTVR+AMKA PNA++L+LF + GLH+DASSGYE++RA++AGVP   ISLSSQELP DF E ++ G+ +NACS+ QL+R GQ  PG +VGLRFNPG GSGGTGKTNVGGP S+FGIWHE   + +A+ A + L+VVRIHTHIGSGSDP VWQ V+  SL LV  FP V+TLNLGGGYKV R++ E  TD   +GAPV+  FE FA E GR L LE+EPGTFLVANAGA++C +QD  +T    FLKLD+GMTE+LRPSLYG+QHP+ + P   T   +T  YVVVGHCCESGDL++ A GE +T+A R +  A  GDLVV+ G+GAYCAGMSTKNYNSFPEAPEV+  +GG F LIRRRQTL+Q LQNE
Sbjct:    9 FLSPAAASAIAAAHGTPCYVYDQASLERQADAMLAFPNAFGLTVRFAMKACPNASVLRLFAAKGLHLDASSGYEVRRAIKAGVPAERISLSSQELPVDFAELLSLGIHVNACSLLQLERIGQARPGQQVGLRFNPGRGSGGTGKTNVGGPDSSFGIWHESADQAQAIAAQYKLKVVRIHTHIGSGSDPVVWQEVSAASLALVLRFPDVVTLNLGGGYKVARVATEKGTDPQVVGAPVKLAFEKFAAEHGRALRLEIEPGTFLVANAGAVLCRVQDVVSTGIREFLKLDSGMTEILRPSLYGSQHPVYLYPAQPT--GRTREYVVVGHCCESGDLISCATGEPETLAARALPEAVAGDLVVIGGAGAYCAGMSTKNYNSFPEAPEVLLQTGGQFQLIRRRQTLEQILQNE 415          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: PHX79390.1 (diaminopimelate decarboxylase [Opitutae bacterium])

HSP 1 Score: 530.0 bits (1364), Expect = 7.600e-147
Identity = 260/414 (62.80%), Postives = 314/414 (75.85%), Query Frame = 0
Query:   62 LEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNE 476
            +E  RFL P+    +A   GTP YVYD +TL A A   LAFPNAFGLTVR+AMKA PNA++LK+F + GLH DASSG+E++RAM AGVP   +SLSSQELP DF   +++GV +NACS+ QL+R G+  PG +VGLRFNPG GSGGTGKTNVGGP S+FGIWHE   + +A+V  + ++VVRIHTHIGSGSDP VWQ V+  SL LV  FP V TLNLGGGYKV R++ E  TD   +GAPV+  FE FAQ  GRKL LE+EPGTFLVANAGA++  +QD  +T A  FLKLD+GMTE+LRPSLYG+QHP+ + P   T A  T  YV+VGHCCESGDL++ APGE +T+A R +  A  GDL V+ G+GAYCAGMSTKNYNSFPEAPEV+    G F LIRRRQ+L+Q LQNE
Sbjct:    1 MENHRFLLPDSARQIAAAHGTPCYVYDQATLDAQADAMLAFPNAFGLTVRFAMKACPNASVLKVFANKGLHFDASSGWEVRRAMHAGVPADRLSLSSQELPEDFPSLLSKGVHVNACSLLQLERIGKALPGHEVGLRFNPGRGSGGTGKTNVGGPDSSFGIWHEWADQAQAIVKQYGMKVVRIHTHIGSGSDPVVWQEVSAASLALVSRFPTVHTLNLGGGYKVARVASEKGTDPQVVGAPVKVAFEKFAQADGRKLRLEIEPGTFLVANAGAVLSRVQDIVSTGAREFLKLDSGMTEILRPSLYGSQHPVHLYPAKATGA--TRDYVIVGHCCESGDLISCAPGEPETLATRTLPEAAAGDLCVIGGAGAYCAGMSTKNYNSFPEAPEVLLRRDGKFSLIRRRQSLEQILQNE 412          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: KRP36962.1 (diaminopimelate decarboxylase [Opitutaceae bacterium BACL24 MAG-120322-bin51])

HSP 1 Score: 528.5 bits (1360), Expect = 2.200e-146
Identity = 246/419 (58.71%), Postives = 326/419 (77.80%), Query Frame = 0
Query:   62 LEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSA--HTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDL 479
            L + RFL   +   +A++FGTP YVYDM++L A+A   LAFPNAFGLT RYAMKASPNAAILK+FN  GL +DASSG+E++RA+ AGVP ++ISLS+QELP+DF E    G++INACS+SQL+RFGQ CPG  +G+RFNPG GSGG  +TNVGGP+S+FGIWHE + +V+A+V  ++L+V+RIHTHIGSGSDPAVWQ ++ +SLDLVR+FP V+ LNLGGGYKV RM  E  TDL + GAPV + F +FAQ TGR++ LE+EPGT+L+AN  +++  +QD  +T A  + FLKL+ GMTE+LRPS+YGAQHP+ ++  +   A +T  Y++VGHCCESGD+LTPAPG+ + +A R + +  IGDL V++G+GAYCA MSTK+YNS+PEA E+M  +  +  LIRRRQ  +    NE+ L
Sbjct:    4 LSQPRFLDYTIARTIADDFGTPVYVYDMASLKANAAAVLAFPNAFGLTARYAMKASPNAAILKIFNEAGLQIDASSGHEVRRAIAAGVPAANISLSTQELPADFAELYELGIEINACSLSQLERFGQACPGKTIGVRFNPGTGSGGNNRTNVGGPASSFGIWHEWIDQVQAIVVQYELQVIRIHTHIGSGSDPAVWQKISAMSLDLVRQFPDVVALNLGGGYKVARMESEVGTDLQQCGAPVAEMFREFAQATGREIRLEIEPGTYLLANTCSVLSTVQDVVSTGADGYDFLKLNTGMTEILRPSIYGAQHPIYIVQPE--AAAETRDYMIVGHCCESGDILTPAPGDPELLATRALPLCQIGDLCVIDGAGAYCAAMSTKHYNSYPEAAEIMLDAAQVPQLIRRRQKREDIWANEVAL 420          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: XP_005832236.1 (hypothetical protein GUITHDRAFT_87175, partial [Guillardia theta CCMP2712] >EKX45256.1 hypothetical protein GUITHDRAFT_87175, partial [Guillardia theta CCMP2712])

HSP 1 Score: 527.3 bits (1357), Expect = 4.900e-146
Identity = 255/422 (60.43%), Postives = 322/422 (76.30%), Query Frame = 0
Query:   67 FLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGK-VGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQD---KTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDLPASALS 485
            FLTPE+   +A+  GTP Y YD++TL   A+ ALAFPNA+GLTVRYAMKA+PNAAILKLF+S+GLH D SS +E++RAM AGVPP+H SLSSQEL   F++ V QGV+IN CS+ Q+++F  KCP GK +GLRFNPGVGSGGT KTNVGGPSS+FGIWHE   +   +V     +VVR+HTHIGSGSDPAVW+    +S+ L  +FP+V  LNLGGGYKV RM  +  T+L    A V+ +FE F+ + GRKLHLE+EPGTFL AN+  LV ++ D     T   HTF+KLDAGMT+VLRPSLYGAQHP++V+P+D +RA +  SYVV GHCCESGDL+TPAPGE +T++ER +  A  GD+VV+E SGAYC+ MSTKNYNSFPEAPEVM     + H+IR+RQ ++   +NE+DLPA  ++
Sbjct:   12 FLTPEVAFEIADTIGTPCYAYDLATLKKQAEAALAFPNAYGLTVRYAMKAAPNAAILKLFHSMGLHFDCSSIFEVQRAMAAGVPPAHCSLSSQELGEGFEKLVEQGVKINCCSLLQVEKFCAKCPAGKELGLRFNPGVGSGGTSKTNVGGPSSSFGIWHEYADKCSEMVKAAGCKVVRVHTHIGSGSDPAVWRRCTGMSIALCEKFPEVTVLNLGGGYKVARMRTDKGTNLQTDCAVVKDEFEQFSSKFGRKLHLEIEPGTFLSANSACLVASVHDIVQTGTDEGHTFIKLDAGMTDVLRPSLYGAQHPIVVVPRDASRASKRKSYVVCGHCCESGDLMTPAPGEPETLSERMLCEAVPGDVVVIEASGAYCSSMSTKNYNSFPEAPEVMIVDNKV-HVIRKRQVVEDIWKNEVDLPAGVIA 432          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: PHX80219.1 (diaminopimelate decarboxylase [Opitutae bacterium])

HSP 1 Score: 525.8 bits (1353), Expect = 1.400e-145
Identity = 261/414 (63.04%), Postives = 309/414 (74.64%), Query Frame = 0
Query:   62 LEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNE 476
            +E  RFL PE    +A  +GTP YVYD  TL A A+  LAFPNAFGLTVR+AMKA PNAAILK+F + GLH DASSG+E++RAM AG+P   ISLSSQELP DF   + +GVQINACS+ QL+R G   PG +VGLRFNPG GSGG GKTNVGGP S+FGIWHE   +  A+   + L+VVRIHTHIGSGSDP VWQ V+  SL LV  FP V TLNLGGGYKV RM+ E STD   IGAPV+K F  FA + GR+L LE+EPGTFLVANAGA++  +QD   T    F+KLD GMTE+LRPSLYG+QHP+ + P      E+  +YV+VGHCCESGDL++ APGE +T+A R +  A  GDL V+ G+GAYCAGMSTKNYNSFPEAPEV+    G F LIRRRQ+L+Q LQNE
Sbjct:    1 MENHRFLHPEPARQIAAAYGTPCYVYDQVTLEAQAEAMLAFPNAFGLTVRFAMKACPNAAILKVFANKGLHFDASSGWEVRRAMLAGIPADRISLSSQELPEDFPSLLNKGVQINACSLLQLERIGXALPGHEVGLRFNPGRGSGGNGKTNVGGPDSSFGIWHEWAGQAAALAQQYKLKVVRIHTHIGSGSDPVVWQEVSAASLALVSHFPTVHTLNLGGGYKVARMASEKSTDPQLIGAPVKKAFAKFAADDGRRLRLEIEPGTFLVANAGAVLSRVQDLVRTDLREFIKLDTGMTEILRPSLYGSQHPVFLYPAKPVAGER--AYVIVGHCCESGDLISCAPGEPETLATRTLPEAVAGDLCVIGGAGAYCAGMSTKNYNSFPEAPEVLLRRDGTFTLIRRRQSLEQILQNE 412          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: WP_013043549.1 (diaminopimelate decarboxylase [Coraliomargarita akajimensis] >ADE54827.1 Diaminopimelate decarboxylase [Coraliomargarita akajimensis DSM 45221])

HSP 1 Score: 524.2 bits (1349), Expect = 4.200e-145
Identity = 249/420 (59.29%), Postives = 323/420 (76.90%), Query Frame = 0
Query:   61 ELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTT--SAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDL 479
            +  K RFL       +A++FG+P YVYDM+TL A+A   LAFPNA+GLT RYAMKASPNAAIL++FN  GLH+DASSGYE++RA+ AG  P  ISLS+QELP+DF E    G++INACS+SQL+RFGQ  PG  +G+RFNPG GSGG  +TNVGGP+S+FGIWHE + +V+ +VA +DL+V+RIHTHIGSGSDP VWQ ++++SL+LVR+FP V++LNLGGGYKV RM+ E STDL + G PV  KF +FA ETGR++ LE+EPGT+L+ANA +++  +QDK +T    + FLKL+ GMTEVLRPS+YGAQHP+ ++ K+ T  E T  Y++ GHCCESGD+LTPA G+ + +A R + V +IGDL V++GSGAYC+ MSTKNYNS+PEA EVM       HLIR+RQ       NEL +
Sbjct:    3 DFTKPRFLQYTTARQIADQFGSPVYVYDMATLKANAADVLAFPNAYGLTARYAMKASPNAAILRIFNEAGLHIDASSGYEVRRAIAAGYTPEKISLSTQELPTDFAELYELGIEINACSLSQLERFGQAFPGRSIGVRFNPGAGSGGNNRTNVGGPASSFGIWHEWIDQVQEIVARYDLKVIRIHTHIGSGSDPKVWQKISSMSLELVRQFPDVVSLNLGGGYKVARMADEVSTDLQQCGEPVADKFREFAAETGREIRLEIEPGTYLLANACSVLSMVQDKVSTGREGYEFLKLNTGMTEVLRPSIYGAQHPIFIL-KEATPTE-TCDYMIAGHCCESGDILTPASGDPELLATRTLPVTEIGDLCVIDGSGAYCSAMSTKNYNSYPEAAEVMLDEANRPHLIRKRQDPQALWANELPM 420          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: PHX80346.1 (diaminopimelate decarboxylase [Opitutae bacterium])

HSP 1 Score: 524.2 bits (1349), Expect = 4.200e-145
Identity = 264/441 (59.86%), Postives = 321/441 (72.79%), Query Frame = 0
Query:   43 RGGLIVAAADGVYGESSEELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDLPASAL 484
            R GL  +A D         +E  RFL P+    +A   GTP +VYD +TL A A   L FPNA+G+TVR+AMKA PNA +LK+F + GLH DASSG+E++RAM AGV    +SLSSQELP DF   +++GV +NACS+ QL+R G+  PG +VGLRFNPG GSGGTGKTNVGGP S+FGIWHE   + +A+V  + L+VVRIHTHIGSGSDP VWQ V+T SL LV  FP V TLNLGGGYKV R++ E  TD   +GAPV+  FE FAQ  GRKLHLE+EPGTFLVANAGA++  +QD  +T A  FLKLD+GMTE+LRPSLYG+QHP+ + P   T A     YV+VGHCCESGDL++ APGE +T+A R +     GDL V+ G+GAYC+GMSTKNYNSFPEAPEV+    G F LIRRRQ+L+Q LQNE  LPA  L
Sbjct:   36 RAGLTQSARD-------TPVENHRFLLPDSARQIAAAHGTPCFVYDQATLEAQADAMLGFPNAYGVTVRFAMKACPNATVLKVFANKGLHFDASSGWEVRRAMLAGVSADRLSLSSQELPDDFPSLLSKGVHVNACSLLQLERIGKALPGQEVGLRFNPGRGSGGTGKTNVGGPDSSFGIWHEWADQAQAIVKQYGLKVVRIHTHIGSGSDPVVWQEVSTASLALVSRFPTVHTLNLGGGYKVARVATEKGTDPQVVGAPVKVAFEKFAQADGRKLHLEIEPGTFLVANAGAVLSRVQDIVSTDAREFLKLDSGMTEILRPSLYGSQHPVHLYPARVTGASH--DYVIVGHCCESGDLISCAPGEPETLATRTLPEVVAGDLCVIGGAGAYCSGMSTKNYNSFPEAPEVLLRRDGKFSLIRRRQSLEQILQNE--LPAEGL 465          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: OUT50296.1 (diaminopimelate decarboxylase [Phycisphaera sp. TMED9])

HSP 1 Score: 519.6 bits (1337), Expect = 1.000e-143
Identity = 264/427 (61.83%), Postives = 318/427 (74.47%), Query Frame = 0
Query:   65 LRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQ-GVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREF-PKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTS----AHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKD--KTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDLPASAL 484
            +RFL  E    VA +FGTPTYVYD +TL A A++ALAFPNA+GLTVRYAMKA PN A+LKLF S+GL+ DASS +E++RAMRAGVP S  SLS+Q+L  D    + +  ++IN CS+SQL   G   PG KVG+RFNPG+GSGGT KTNVGGPSS+FGIWHE   +V A+   H+LEVVR+HTHIGSGSD  VW+ V+++SLDL       V TLNLGGGYKVGRM+YE+ST+L ++G PV   F D+ + TG +L LEVEPGT+LVANAGALV  +QD   TS     + FLKLDAGMT+VLRPSLYG+QHPL+V+P D  K   E T  YVVVGHCCESGDLLTPAP E +T+A R +   + GDL+VVE  GAYC+ MST  YNSFP APEV+  S G F  IRRR TLDQ LQNE+ + AS L
Sbjct:    1 MRFLNNEEARTVAQDFGTPTYVYDAATLKARAEEALAFPNAYGLTVRYAMKACPNGAVLKLFESMGLNFDASSTHEVRRAMRAGVPASKCSLSTQQLDDDAITLMKEHSLEINCCSLSQLDTIGSALPGAKVGVRFNPGLGSGGTAKTNVGGPSSSFGIWHEQFDQVVALAKKHNLEVVRVHTHIGSGSDAEVWKRVSSMSLDLCERLGDSVKTLNLGGGYKVGRMAYESSTNLQEVGKPVTDNFRDYKERTGVELKLEVEPGTYLVANAGALVTKVQDVACTSGKDKGNDFLKLDAGMTDVLRPSLYGSQHPLVVVPSDSSKDSDENTHEYVVVGHCCESGDLLTPAPDEPETLAPRLLKTCERGDLLVVESVGAYCSAMSTAGYNSFPTAPEVLKTSKGGFVSIRRRSTLDQLLQNEVQVDASQL 427          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: XP_002286584.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96225.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 515.8 bits (1327), Expect = 1.500e-142
Identity = 267/435 (61.38%), Postives = 321/435 (73.79%), Query Frame = 0
Query:   67 FLTPEL-VEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCP--GGKVGLRFNPGVGSGG-----TG--KTNVGGPSSAFGIWHELLPE--VKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSA------HTFLKLDAGMTEVLRPSLYGAQHPLIVIP---KDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDLPA 481
            FLTPEL    +A   GTP Y Y +S L A+A   LAFPNAFGLTVRYAMKA PN +ILK F S G+ +DASSGYE++RAM  GVP   ISLSSQELP+DFDE +  GV+INACS+SQL+R G+  P    KVG+R NPGVGSGG     TG  KTNVGGPSS+FGIWHEL+ +  V  +V  + LEV RIHTHIGSGSDPA+WQ+VAT SL   + +  + TLNLGGGYKVGR   E +TDL +IGAPV   F DFA+ETGR+L +E+EPGT+LVANAGALV  IQDK +T +      H +LK+DAGMT+VLRPSLYGA HP+ ++P   K       T S VVVGHCCESGDL+TP PGE + + ER +  A+IGD+ V++GSGAYCAGMSTKNYNSFPEAPEV+    G  HLIR+RQ+L Q  +NE D+P+
Sbjct:   47 FLTPELATTCIATAQGTPLYAYSLSQLAAAATATLAFPNAFGLTVRYAMKACPNGSILKYFLSRGICIDASSGYEVRRAMSMGVPAEKISLSSQELPADFDELIGLGVKINACSVSQLERIGKAFPNTSQKVGIRINPGVGSGGFSSSTTGFSKTNVGGPSSSFGIWHELVTDGTVPDIVTKYGLEVERIHTHIGSGSDPAIWQSVATRSLSFCKLWDTITTLNLGGGYKVGRNPGEKTTDLNEIGAPVADAFRDFAKETGRELQMEIEPGTYLVANAGALVTTIQDKVSTKSASSDEGHIYLKMDAGMTDVLRPSLYGAIHPITILPASGKSSDIGTATESVVVVGHCCESGDLMTPKPGEPEALEERVLRTAEIGDIAVMDGSGAYCAGMSTKNYNSFPEAPEVLVDLEGKVHLIRKRQSLQQIYENECDVPS 481          
BLAST of NO01G02310 vs. NCBI_GenBank
Match: GAX25863.1 (diaminopimelate decarboxylase [Fistulifera solaris])

HSP 1 Score: 508.4 bits (1308), Expect = 2.400e-140
Identity = 261/428 (60.98%), Postives = 314/428 (73.36%), Query Frame = 0
Query:   67 FLTPELVEA-VANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKC--PGGKVGLRFNPGVGSGG-------TGKTNVGGPSSAFGIWHELLPE--VKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTS---AHTFLKLDAGMTEVLRPSLYGAQHPLIVIP---KDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNEL 477
            FLTPE  +A +    GTP Y Y +  L  SA   LAFPNA+GLTVRYAMKA PN++ILK F+S G+H+DASSGYE++RAM AG+P  HISLS+QELP+DF + V  G+++NACS+SQL+RFGQ     G K+G+R NPGVGSGG         KTNVGGPSS+FGIWHEL+ +  V A+V  + L V RIHTHIGSGSDP +WQ VAT SL   + FP V  LNLGGGYKVGR+  E +TDL  IG PV + F  FAQE GR+L LE+EPGTFLVA AGALV  IQDK  T+    HTFLKLDAGMT+VLRPSLYGA HP+ + P   K     ++T S VVVGHCCESGDL+TP PGE + +AER +  A IGD+ V++GSGAYC+GMSTKNYNSFPEAPEV+    G   LIR+RQ+L+Q   NE+
Sbjct:   40 FLTPETAKACIECAGGTPLYAYSLEKLEESANACLAFPNAYGLTVRYAMKACPNSSILKYFSSKGIHIDASSGYEVRRAMAAGIPAEHISLSTQELPADFADLVDMGIKLNACSVSQLERFGQHYAGTGAKIGVRVNPGVGSGGFSKSTTSFSKTNVGGPSSSFGIWHELVTDGTVPAIVEKYGLSVERIHTHIGSGSDPEIWQQVATKSLSFCKLFPDVTALNLGGGYKVGRVEGEKTTDLQLIGQPVVEAFRQFAQEEGRELKLEIEPGTFLVAMAGALVSTIQDKVITTGDDGHTFLKLDAGMTDVLRPSLYGAVHPITLFPASGKTGDVGDETESVVVVGHCCESGDLMTPKPGEPEDLAERALRKATIGDICVMDGSGAYCSGMSTKNYNSFPEAPEVLVGKNGETFLIRKRQSLEQIYANEI 467          
The following BLAST results are available for this feature:
BLAST of NO01G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PAW85260.19.000e-14863.81diaminopimelate decarboxylase [Opitutae bacterium ... [more]
PHX79390.17.600e-14762.80diaminopimelate decarboxylase [Opitutae bacterium][more]
KRP36962.12.200e-14658.71diaminopimelate decarboxylase [Opitutaceae bacteri... [more]
XP_005832236.14.900e-14660.43hypothetical protein GUITHDRAFT_87175, partial [Gu... [more]
PHX80219.11.400e-14563.04diaminopimelate decarboxylase [Opitutae bacterium][more]
WP_013043549.14.200e-14559.29diaminopimelate decarboxylase [Coraliomargarita ak... [more]
PHX80346.14.200e-14559.86diaminopimelate decarboxylase [Opitutae bacterium][more]
OUT50296.11.000e-14361.83diaminopimelate decarboxylase [Phycisphaera sp. TM... [more]
XP_002286584.11.500e-14261.38predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX25863.12.400e-14060.98diaminopimelate decarboxylase [Fistulifera solaris... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008071NSK008071Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02310.1NO01G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g92gene1437Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02310.1NO01G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02310 ID=NO01G02310|Name=NO01G02310|organism=Nannochloropsis oceanica|type=gene|length=1625bp
ATGGCAGgtgaggactgaatgtttagatggccgtcctttgctttgccgtc
ctttgcttttctcgcgcgctgcataatttcagagtgatcttgcgtggcga
ttgcgccgacctcctaaataaaggacacttttttaccttagctcacatct
taacccctaccctggacacaatcacagCGCCCACCAGCATGCGGGCCCTT
TTGCTTTTGGTGGTCTCCGCGTGCTTGGCCACCGCTTTTTTGCAGCCACA
CTTCTCGTCCTTCGAGGGACGCAGCATCCACAGCCGCAGCATCAGGAGGG
GAGGGTTAATCGTGGCGGCTGCAGACGGTGTCTATGGAGAGTCATCAGAA
GAGCTAGAAAAGCTGCGTTTTCTGACTCCCGAGCTAGTTGAGGCAGTTGC
GAATGAATTTGGCACTCCCACCTACGTGTACGACATGAGCACGCTCACCG
CTAGCGCCAAGCAGGCCCTGGCGTTTCCCAACGCGTTTGGCCTGACAGTG
CGGTACGCGATGAAGGCCAGCCCTAACGCCGCCATCCTGAAGCTATTTAA
TAGCCTGGGTTTGCATGTGGATGCTTCGTCGGGCTATGAGATCAAGCGGG
CCATGCGAGCTGGCGTGCCACCGTCGCACATCAGTTTGTCGTCGCAAGAG
CTGCCGTCTGATTTTGACGAGTACGTGGCGCAGGGCGTGCAGATCAATGC
CTGCTCCATCTCACAGCTGAAGCGTTTCGGGCAAAAGTGTCCAGGAGGGA
AGGTGGGCCTACGCTTCAACCCCGGCGTGGGCTCAGGCGGCACCGGCAAG
ACGAATGTGGGGGGTCCTTCGTCTGCCTTCGGGATATGGCACGAGTTGCT
CCCCGAGGTCAAGGCGGTAGTGGCCACGCACGACCTAGAGGTGGTACGCA
TCCATACCCACATTGGCTCGGGCTCTGATCCGGCCGTGTGGCAGAATGTG
GCAACGTTGTCCTTGGATCTGGTGCGGGAGTTTCCCAAGGTGATGACTCT
GAATCTGGGGGGGGGCTACAAGGTAGGTCGCATGAGCTATGAGGCTTCGA
CAGACTTGCTTAAGATTGGCGCGCCCGTGCAGAAGAAGTTCGAGGACTTT
GCACAAGAGACGGGCCGAAAGCTCCATTTGGAAGTGGAGCCGGGCACATT
TTTGGTGGCCAATGCCGGGGCTTTGGTGTGTGCTATTCAGGACAAGACTA
CCACCAGCGCGCACACTTTCCTGAAGTTGGACGCGGGTATGACCGAGGTC
CTGCGCCCTTCCTTGTATGGGGCGCAACACCCGTTGATTGTGATTCCCAA
GGACAAGACCCGGGCTGAGCAGACAGCATCGTATGTGGTGGTGGGCCACT
GCTGCGAGTCGGGGGATTTGCTCACGCCTGCGCCAGGAGAGGCCGACACG
ATTGCCGAGCGGAAGATGACGGTGGCTGACATTGGGGACTTGGTGGTGGT
GGAAGGCTCGGGAGCCTACTGTGCGGGAATGAGCACCAAAAACTATAACT
CCTTTCCGGAAGCTCCCGAGGTGATGTATGCGTCTGGTGGCATTTTCCAC
CTCATCCGCCGGCGGCAGACACTGGATCAGACCCTTCAAAATGAGCTTGA
TTTGCCTGCCAGCGCACTTTCTTGA
back to top

protein sequence of NO01G02310.1

>NO01G02310.1-protein ID=NO01G02310.1-protein|Name=NO01G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MAAPTSMRALLLLVVSACLATAFLQPHFSSFEGRSIHSRSIRRGGLIVAA
ADGVYGESSEELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQAL
AFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVP
PSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFN
PGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGS
GSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIG
APVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTF
LKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDL
LTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPE
VMYASGGIFHLIRRRQTLDQTLQNELDLPASALS*
back to top
Synonyms
Publications