NO01G02220, NO01G02220 (gene) Nannochloropsis oceanica

Overview
NameNO01G02220
Unique NameNO01G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length726
Alignment locationchr1:573108..573833 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:573108..573833 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02220 vs. NCBI_GenBank
Match: EWM29215.1 (hypothetical protein Naga_100007g51 [Nannochloropsis gaditana])

HSP 1 Score: 355.9 bits (912), Expect = 9.800e-95
Identity = 178/228 (78.07%), Postives = 195/228 (85.53%), Query Frame = 0 
Query:   12 LLFVFLLVLLPAKFKAFTIFRYRSTHRFLSTSPIRASIEELYSGEPLDPNRRTLRLAFLAASRPKKPAKSDKERQLDEKVWGRWRLVEESIDRPLAADLAKYGAKLKPTYSKFEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAPTLRFRINRKEVGIDFDEYESVDDMPSVSFYLGTFKDGAMDVIEGKIQRNRDATPPEDGSEKKIVTVGTFTMVKVAAL 240
            +L   +LVLL +   AFT      +  + +T+ +R SIEELYSGEPLDPNRR LRLAFL+ SRPK+P K++KERQLDEKVWGRWRL EESIDRP AADLAKYG KLKPTYS+FEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAP +RFRINRKEVGIDFDEYESVD MPSVSFY GTFKDG+MDVIEG IQRNRDA PPEDGS   +VTVGTF MVKVA+L
Sbjct:    1 MLLAPVLVLLMSSTHAFTGRPRDISPAYRTTTRMRGSIEELYSGEPLDPNRRKLRLAFLSTSRPKQPPKTEKERQLDEKVWGRWRLEEESIDRPPAADLAKYGKKLKPTYSRFEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAPMIRFRINRKEVGIDFDEYESVDHMPSVSFYSGTFKDGSMDVIEGTIQRNRDAAPPEDGSAPVVVTVGTFRMVKVASL 228
The following BLAST results are available for this feature:
BLAST of NO01G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29215.19.800e-9578.07hypothetical protein Naga_100007g51 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008114NSK008114Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02220.1NO01G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576565gene_208Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g51gene1469Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02220.1NO01G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02220 ID=NO01G02220|Name=NO01G02220|organism=Nannochloropsis oceanica|type=gene|length=726bp
ATGGGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCT
CTTGGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATC
GCTCAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAG
GAGCTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCT
CGCCTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGG
AACGACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAG
TCGATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCT
GAAGCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATA
ATGGCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGG
CAATGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCG
GATCAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGG
ATGATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCG
ATGGATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCC
GGAGGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGG
TCAAGGTGGCGGCTTTGCAATTTTGA
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protein sequence of NO01G02220.1

>NO01G02220.1-protein ID=NO01G02220.1-protein|Name=NO01G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MGRLSSFPFSLLLFVFLLVLLPAKFKAFTIFRYRSTHRFLSTSPIRASIE
ELYSGEPLDPNRRTLRLAFLAASRPKKPAKSDKERQLDEKVWGRWRLVEE
SIDRPLAADLAKYGAKLKPTYSKFEEDLFLDMYNGLMLTKEDTCAFGMGW
QWTNLKDVYSAPTLRFRINRKEVGIDFDEYESVDDMPSVSFYLGTFKDGA
MDVIEGKIQRNRDATPPEDGSEKKIVTVGTFTMVKVAALQF*
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Synonyms
Publications