NO01G02180, NO01G02180 (gene) Nannochloropsis oceanica

Overview
NameNO01G02180
Unique NameNO01G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr1:553283..554953 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:553283..554953 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008119NSK008119Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02180.1NO01G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02180.1NO01G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02180 ID=NO01G02180|Name=NO01G02180|organism=Nannochloropsis oceanica|type=gene|length=1671bp
CGCACGTCCCACCATCTGATATCCACATCATACACTACACAACTAAGTTT
AGTTCCAGGAGGACGATTAGTGCAGCTTGTCCTGAGAACCATCCGTTCAC
GCCGCCTCCCCAACCCCCAGTTTCCCAAGACCTACAACATGATCCGCGGC
AGTTGGGGACGCGAATGGCGAGGCAGGTCCCTCGTGCTGCTCGTTAGCGT
GCTAGCCTTGTCGTTGTGCGTCTGCCCAGCTCGGGCAAGGCGTGAGgtgc
gtaccacctatgtgtgtggactaggggaagcatgggggtttgagcttggc
ccatgcttgaaaattgctaccatacaaataaccacacttatcgagcggtg
ctcggggcccttataactcagccaacgcatctttttgcctgtttataatg
tatgtagattgcgcattctgcccactcaccgcttctatccttcgccctcc
ctcccaatccacagTTGGAAGAAGGTGCATCTCCCTCTACCATCAGCACA
AATGACCCCACCGTGGCCCCCACCCCGTTAGACACAGGCCGCAATAGAGG
CAACGAAACCGCCCAGGCACCGATCTCACCCACCACGTTAGGCGGAGGTC
ACAGTGAAGAGAACGAGACCACCAAAGCATCGGCATCACCCACCCCTTCC
CCAGAAGTGGCGCTGACTCCAGACGGACCAACCCCGGCCCCTACATTGAA
ACCAACTTTTGCCCCCACACCCGCGCCGACACCTGCACCAACCCCTCAAC
CCCCGGTACAATTCTCAATCGGCTTCAGTCTTACGATCAGTTTTACTCAG
CAGCCACCATCGGACCTGTATCCAGCCAACTTTGCGGACCATGCCCAGGC
GCAAAACGTGATCAAGgtacgtgtgtgggaatgaatgagagaaaaatgga
ttgattgatctgaactcggtacacatcaatattcttggttacttaattga
tcactgtgtagtctccacccaatctcagctttttttctgcatagcttgtt
ctttctctctattacatacgcttatcactatacccatcttctgaccctct
tccttccccacatgccacccaaaatagGATGCCCTTTCCCTCGGAGTCAC
GGTTATTAAACGTGGCGACATTGACAGCGTCCAAGCTGTGCGTCTCCGTA
AACTCGATCTCACACTGCGCATTCAGATTACTACCCTCCTCGCCAGCAGC
GGCTATTCCGACCCCCTCCAGTTCTATAATGGTTTTGTCCGCCAGCTTTA
CGCAGCCAAACAAGACGGCACTCTCAATAGATACCTGCAAGCCGCCGCTG
TCACCAATGGTGTGTATGCCTTCTCCCAAGCCTATGTGAAGGCATACACG
GTCCCCAATCGGTACATGATCAATGGGGAAAGTACTTCTGTGGTCATCCC
GGTGGGCGATACGGACGAGAAACAGAAGCAGGGCTTACCTCTAGGCGTGC
TAATTCCCTCGGTGCTGGTTACCGTGATGTTATTTATTGCCATGGCCATG
TTTGCTAGACAACGAGCGAGAGTGTTTGAGCAGCAATTACAGCAACAGCA
GCAGTTGGCGGTGATGGGGTTGGTGTCGATGGATGACAGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGCGGGGGAGAGGAA
GGGGAGTTGAGGCGGTCATGA
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protein sequence of NO01G02180.1

>NO01G02180.1-protein ID=NO01G02180.1-protein|Name=NO01G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MIRGSWGREWRGRSLVLLVSVLALSLCVCPARARRELEEGASPSTISTND
PTVAPTPLDTGRNRGNETAQAPISPTTLGGGHSEENETTKASASPTPSPE
VALTPDGPTPAPTLKPTFAPTPAPTPAPTPQPPVQFSIGFSLTISFTQQP
PSDLYPANFADHAQAQNVIKDALSLGVTVIKRGDIDSVQAVRLRKLDLTL
RIQITTLLASSGYSDPLQFYNGFVRQLYAAKQDGTLNRYLQAAAVTNGVY
AFSQAYVKAYTVPNRYMINGESTSVVIPVGDTDEKQKQGLPLGVLIPSVL
VTVMLFIAMAMFARQRARVFEQQLQQQQQLAVMGLVSMDDREEEEEEEEE
EEEEEGGGGEEGELRRS*
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Synonyms
Publications