NO01G02100, NO01G02100 (gene) Nannochloropsis oceanica

Overview
NameNO01G02100
Unique NameNO01G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr1:537429..538425 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:537429..538425 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO01G02100 vs. NCBI_GenBank
Match: EWM29207.1 (hypothetical protein Naga_100007g33 [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 4.500e-16
Identity = 61/104 (58.65%), Postives = 71/104 (68.27%), Query Frame = 0 
Query:    4 LAQQRQFLLLVAACLLLAATKTHAFLAPV-GRLPALHARAPLS----TQQQNHMQQLAXXXXXTRRRDLLKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQTV 103
            L Q+   L L+A C LL A  T AF+ P  GR  +LH R+  S    +QQ N M  L+      R+RDL+KMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQT+
Sbjct:    3 LTQKNVALALMAIC-LLGAAMTQAFVVPAPGRALSLHTRSSTSQHKRSQQYNFMHLLSGTSSCKRKRDLIKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQTL 105
The following BLAST results are available for this feature:
BLAST of NO01G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29207.14.500e-1658.65hypothetical protein Naga_100007g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02100.1NO01G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576507gene_195Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g33gene1481Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02100.1NO01G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02100 ID=NO01G02100|Name=NO01G02100|organism=Nannochloropsis oceanica|type=gene|length=997bp
AACCACGTACATATGCTCTCTTAAAGAAGCGATTCCCCATCATGACGATC
CAAGTGCGTTGATTTTGCTTTGCCTGTGTGACTACATGTGATATGTCATT
CACACTTATTCATTTCGTTGACCGATACTCCCTTAGCAATGCCCCGCAGG
ATCATGGTCAGTGCACGTGGCGGGTGGTCTCTTCGAAAAAATGTCCCCCC
AAGAAGTTATCCCCAACGACGCATCAAAGCGTGAGGTGGTCTTCTGGATG
CCACCGCCTGCGCCACGTCTTTAAGACGCCCCCATCACCCACAGCCCTAT
TTGTGTATTCAAACTAGCAGTAAAGTTGCTGTGCAGGATACGCACCTTTC
GCGTTTTATCTCCTCCGAGCCCTGTCTCTTCCAAGCCCACCACTCCTCTC
ACACCATCCCCGACACACCCAACACGATGCACAGTACACATGGCCTTCCT
CGCACAACAAAGACAATTCCTCCTCTTGGTAGCAGCCTGCCTGCTACTGG
CTGCTACCAAGACCCACGCATTCCTGGCCCCCGTCGGCCGCCTACCTGCC
TTGCATGCACGTGCTCCTTTGTCAACACAACAACAAAACCATATGCAGCA
ACTGGCCGCTTCCACCTCATCTACGCGCAGACGGGACCTCCTAAAAATGG
AGGTCGATCCTGCGGTCATCGGAGGTGTAATTGCGGGTGTTGTTGGCGTG
AGTTTGGGGGTAGGTGCCATGATATTCACAGAGAAGCAAACCGTGCGACG
GGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCCGCACGGGCTCAAAGGG
CTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAACAGTGCAGTCTTCGGAA
CCGACGTCACAAGGAGGACAAGGAGGGTTGACAGAAGATGAGGACGGCTG
GTAATTTTGAAAAAGGGAGTTATTGTTGGGGAAAGGGGCGGGAGGGAGGA
TGGGGAGGAGAAGTGAGGGAGATTGTCGGGCTGTAGGGAGGGAGGGA
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protein sequence of NO01G02100.1

>NO01G02100.1-protein ID=NO01G02100.1-protein|Name=NO01G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MAFLAQQRQFLLLVAACLLLAATKTHAFLAPVGRLPALHARAPLSTQQQN
HMQQLAASTSSTRRRDLLKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQ
TVRREERKAADKAKAARAQRAQAAASGTASATVQSSEPTSQGGQGGLTED
EDGW*
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Synonyms
Publications