NO01G01970, NO01G01970 (gene) Nannochloropsis oceanica

Overview
NameNO01G01970
Unique NameNO01G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length451
Alignment locationchr1:497454..497904 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase assembly protein COX16
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:497454..497904 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0031966mitochondrial membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR020164Cyt_c_Oxase_assmbl_COX16
Homology
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BLAST of NO01G01970 vs. NCBI_GenBank
Match: EWM29133.1 (Cytochrome c oxidase assembly protein COX16 [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 7.900e-28
Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0 
Query:    1 MLSPQLWKKMSAGLPLVVFLAGGSVFLAKFVQGRVEAKDNRLQSKSEREFSIEEEHKQMMARLNPESNYKVVRIHRPEDD 81
            M+S + WKK+SAGLPL+VFL GGS+FLAKFVQGRVEAKD++LQS+SEREFSIEEEHK+MMA+L+PE+ YKVVRIHRPEDD
Sbjct:    1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
The following BLAST results are available for this feature:
BLAST of NO01G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29133.17.900e-2880.00Cytochrome c oxidase assembly protein COX16 [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008150NSK008150Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01970.1NO01G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576460gene_178Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g19gene1496Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01970.1NO01G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01970 ID=NO01G01970|Name=NO01G01970|organism=Nannochloropsis oceanica|type=gene|length=451bp
ATGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGT
TGTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGgtacgagtgtcgt
tgtaagaccctcaagccctctaaatcctgccccttgccttccccgcccct
cttggctagttaataccgcagcgttattttgcaagccacttgacatcctt
cgtttagttcaacgcacccatgaaaccgttgcctctagttctttcccctg
gtcacaccttccctccatgtccccctttctcatcaacagTTTGTTCAAGG
TCGAGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAAT
TCAGCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAG
AGTAACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTA
G
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protein sequence of NO01G01970.1

>NO01G01970.1-protein ID=NO01G01970.1-protein|Name=NO01G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLSPQLWKKMSAGLPLVVFLAGGSVFLAKFVQGRVEAKDNRLQSKSEREF
SIEEEHKQMMARLNPESNYKVVRIHRPEDDNG*
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Synonyms
Publications