NO01G01940, NO01G01940 (gene) Nannochloropsis oceanica

Overview
NameNO01G01940
Unique NameNO01G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr1:490090..490782 -

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Properties
Property NameValue
DescriptionTransmembrane emp24 domain trafficking protein 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:490090..490782 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Homology
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_005856362.1 (transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >EKU19997.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >EWM29134.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 5.000e-88
Identity = 178/222 (80.18%), Postives = 189/222 (85.14%), Query Frame = 0
Query:    9 SPRIPQRRDASNVLHSLVLYPATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            S RIP R        SL++  +      LL P   T+FTVEVAPGT EC++ VAT+GDDFLGNFEVLT GSYAPVEVTVEGPDGK LWRAADKSEETFSFEA+ NGD+TLCI NGA+GR DDG  RLVGFSFRTDV VDE IASE+SIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV
Sbjct:    9 SARIPSR--------SLLVVLSLXXXXXLLKP--ATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_018329110.1 (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis] >XP_018334679.1 PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis])

HSP 1 Score: 108.6 bits (270), Expect = 2.600e-20
Identity = 65/191 (34.03%), Postives = 101/191 (52.88%), Query Frame = 0
Query:   41 HSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            +S + + + V     ECF      G      FE+  EG +  ++V + GPDGK +++   +S   ++F A ANG YT C  N    ++   T ++V F+ +  +    E+   EES  +L ++   L+  LT V   Q YM+ R+ +H S  ES  SRV++W+  EAV+LV M   QI  + +FFEVRR V
Sbjct:   17 NSVSCYYITVDADAEECFFDKVESGTKMSLTFEI-AEGGFLDIDVRIVGPDGKVIYQGERESSGKYTFAAHANGIYTYCFSN----KMSTMTPKVVMFNMQIGESAKHEENQGEESSTKLEDMIRELSGALTGVKQEQEYMQLRDRIHRSINESTNSRVVMWSFFEAVILVAMTFGQIYYLKRFFEVRRVV 202          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_013086359.1 (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Biomphalaria glabrata])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 70/209 (33.49%), Postives = 108/209 (51.67%), Query Frame = 0
Query:   25 LVLYPATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEE---SIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            +VL  +TF++ LL L  S+  + + +     ECF    T G      FEV  EG +  +++ + GPDGK +     +S   ++F A  +G+Y  C  N     +   T ++V FS        +D A EE   +  +L E+ N L+  LT V   Q YM  RE +H S  ++  SRV++W+  EA+VLV M + Q+  + +FFEVRR V
Sbjct:    2 IVLNISTFIVTLLSLIQSSEQYFISIDAHAEECFFDKVTSGTKMSLMFEV-AEGGFLDIDIKIYGPDGKVIHSGDRESNGKYTFAAHMDGNYKYCFSNA----MSTMTPKIVVFSIDIGE-KPKDAAGEEGDANQNKLTEMINELSTALTGVKHEQEYMEVRERIHRSINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRVV 204          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_022536488.1 (transmembrane emp24 domain-containing protein 2 isoform X2 [Astyanax mexicanus])

HSP 1 Score: 105.1 bits (261), Expect = 2.900e-19
Identity = 68/203 (33.50%), Postives = 103/203 (50.74%), Query Frame = 0
Query:   29 PATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            P   LLLL  L  S + + V V     ECF      G      FEV  EG +  ++V + GPDGKQ+++   +S   +S  A  +G Y  C  N    ++   T ++V F+    +    +D+ +E    +L E+ N L   +T V   Q YM  RE +H +  ++  SRV++W+  EA+VLV M + QI  + +FFEVRR V
Sbjct:    5 PELALLLLAALAASASGYFVSVDAHAEECFYERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 202          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_004595402.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 [Ochotona princeps])

HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19
Identity = 66/203 (32.51%), Postives = 104/203 (51.23%), Query Frame = 0
Query:   29 PATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            PA  L+LL  L  + + + V +     ECF    T G      FEV  EG +  ++V + GPD K +++   +S   ++F A  +G Y  C  N    R+   T ++V F+    +    +D+ +E    +L E+ N L   +T V   Q YM  RE +H +  ++  SRV++W+  EA+VLV M + QI  + +FFEVRR V
Sbjct:    4 PAELLVLLAALLATASGYFVSIDAHAEECFFERVTSGTKMGLIFEV-AEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSN----RMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_017549184.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Pygocentrus nattereri])

HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19
Identity = 64/199 (32.16%), Postives = 104/199 (52.26%), Query Frame = 0
Query:   33 LLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            +LLL ++  + + + V +     ECF      G      FEV  EG +  ++V + GPDGKQ+++   +S   +S  A  +G Y  C  N    ++   T ++V F+    +   D+D+ +E    +L E+ N L   +T V   Q YM  RE +H +  ++  SRV++W+  EA+VLV M + QI  + +FFEVRR V
Sbjct:    8 VLLLAVMVATASGYFVSIDAHAEECFFERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKDQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_018560956.1 (transmembrane emp24 domain-containing protein 2 [Anoplophora glabripennis])

HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 0
Query:   31 TFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            T  +L  +  H + A+ + V     ECF      G      FE+  EG +  ++V + GPDGK +++   ++   ++F A A G YT C  N    ++   T ++V F+         +    E+  +L ++   L+  LT V   Q YM+ R+ +H S  ES  SRV++W+  EA++LV M + Q+  + +FFEVRR V
Sbjct:    7 TLFMLFTICVHQSLAYFITVDAHAEECFFDKVEAGTKMGLTFEI-AEGGFLDIDVRIIGPDGKTIYQGERETSGKYTFAAHAQGVYTYCFSN----KMSTMTPKVVMFNMAIGESPKAEHQEGETTNKLEDMIRELSASLTGVKQEQEYMQVRDRIHRSINESTNSRVVMWSFFEALILVAMTMGQVYYLKRFFEVRRVV 201          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_022110308.1 (transmembrane emp24 domain-containing protein 2-like [Acanthaster planci])

HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 0
Query:   42 STTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            S   + + +     ECF    T G      FEV  EG +  ++V + GPD K ++    +S   ++F A  +G Y  C  N    R+   T ++V FS    D   D+ + +EE   +L ++ N L  GLT V   Q YM  RE +H S  ++  SRV++W+  E++VLV M + Q+  + +FFEVRR V
Sbjct:   19 SIKGYFIAIDAHAEECFHDKVTSGTKMALTFEV-AEGGFLDIDVKITGPDNKVIYSGERESNGKYTFSAHMDGQYRYCFSN----RMSTMTPKVVMFSIDIGDSPKDQSMDTEEHHNKLEDMINQLATGLTAVKHEQEYMEVRERVHRSINDNTNSRVVLWSFFESLVLVAMTLGQVYYLKRFFEVRRVV 203          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_005988996.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Latimeria chalumnae])

HSP 1 Score: 103.2 bits (256), Expect = 1.100e-18
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 0
Query:   32 FLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            FL LL L   + + + V +     ECF    T G      FEV  EG +  ++V + GPDGK +++   +S   ++F A  +G Y  C  N    ++   T ++V F+    +    +D+ +E    +L E+ N L   +T V   Q YM  RE +H +  ++  SRV++W+  EA+VLV M + QI  + +FFEVRR V
Sbjct:    7 FLALLALFSATASGYFVSIDAHADECFFERVTSGTKMGLIFEV-AEGGFLDIDVEITGPDGKGIYKGDRESSGKYTFAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201          
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_010795826.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Notothenia coriiceps])

HSP 1 Score: 102.8 bits (255), Expect = 1.400e-18
Identity = 64/202 (31.68%), Postives = 104/202 (51.49%), Query Frame = 0
Query:   30 ATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            A  ++LL +L  + + + V +     ECF      G      FEV  EG +  ++V + GPDGKQ+++   +S   +S  A  +G Y  C  N    ++   T ++V F+    +    +D+ +E    +L E+ N L   +T V   Q YM  RE +H +  ++  SRV++W+  EA+VLV M + QI  + +FFEVRR V
Sbjct:    5 AELIVLLAVLSSTASGYFVSIDAHAEECFYERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201          
The following BLAST results are available for this feature:
BLAST of NO01G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856362.15.000e-8880.18transmembrane emp24 domain trafficking protein 2 [... [more]
XP_018329110.12.600e-2034.03PREDICTED: transmembrane emp24 domain-containing p... [more]
XP_013086359.11.700e-1933.49PREDICTED: transmembrane emp24 domain-containing p... [more]
XP_022536488.12.900e-1933.50transmembrane emp24 domain-containing protein 2 is... [more]
XP_004595402.18.400e-1932.51PREDICTED: transmembrane emp24 domain-containing p... [more]
XP_017549184.18.400e-1932.16PREDICTED: transmembrane emp24 domain-containing p... [more]
XP_018560956.18.400e-1930.50transmembrane emp24 domain-containing protein 2 [A... [more]
XP_022110308.18.400e-1933.16transmembrane emp24 domain-containing protein 2-li... [more]
XP_005988996.11.100e-1832.50PREDICTED: transmembrane emp24 domain-containing p... [more]
XP_010795826.11.400e-1831.68PREDICTED: transmembrane emp24 domain-containing p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008152NSK008152Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01940.1NO01G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636572gene_176Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g16gene1499Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01940.1NO01G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01940 ID=NO01G01940|Name=NO01G01940|organism=Nannochloropsis oceanica|type=gene|length=693bp
ATGGAGCGATTGCCACCATTACACTCACCAAGAATACCACAACGACGAGA
TGCTTCAAATGTATTACATTCCTTGGTCCTCTATCCCGCCACCTTCCTCC
TTCTTCTTCTTCTCCTGCCCCATTCCACCACGGCCTTCACAGTCGAAGTC
GCTCCGGGGACAGCAGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGA
CTTCTTGGGTAATTTTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGG
AAGTGACGGTGGAGGGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGAT
AAGAGCGAAGAGACGTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATAC
TTTGTGCATTGGTAATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCC
GACTGGTGGGTTTTTCGTTTCGGACTGACGTGTTCGTGGACGAGGATATT
GCGAGCGAGGAGAGCATTCGACGACTCATTGAACTTGGGAATTCGTTGAC
CAAGGGTTTGACGAACGTAATGGATCATCAGAGTTATATGCGGCAACGCG
AGGATTTGCATGCATCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATC
TGGACGGTGGTGGAGGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGAT
CAGCATTATTAGCAAGTTTTTTGAGGTGCGACGAGCAGTGTAA
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protein sequence of NO01G01940.1

>NO01G01940.1-protein ID=NO01G01940.1-protein|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MERLPPLHSPRIPQRRDASNVLHSLVLYPATFLLLLLLLPHSTTAFTVEV
APGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAAD
KSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDI
ASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLI
WTVVEAVVLVGMAVWQISIISKFFEVRRAV*
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Synonyms
Publications