NO01G01940, NO01G01940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_005856362.1 (transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >EKU19997.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >EWM29134.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 333.6 bits (854), Expect = 5.000e-88 Identity = 178/222 (80.18%), Postives = 189/222 (85.14%), Query Frame = 0 Query: 9 SPRIPQRRDASNVLHSLVLYPATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 S RIP R SL++ + LL P T+FTVEVAPGT EC++ VAT+GDDFLGNFEVLT GSYAPVEVTVEGPDGK LWRAADKSEETFSFEA+ NGD+TLCI NGA+GR DDG RLVGFSFRTDV VDE IASE+SIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV Sbjct: 9 SARIPSR--------SLLVVLSLXXXXXLLKP--ATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_018329110.1 (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis] >XP_018334679.1 PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis]) HSP 1 Score: 108.6 bits (270), Expect = 2.600e-20 Identity = 65/191 (34.03%), Postives = 101/191 (52.88%), Query Frame = 0 Query: 41 HSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 +S + + + V ECF G FE+ EG + ++V + GPDGK +++ +S ++F A ANG YT C N ++ T ++V F+ + + E+ EES +L ++ L+ LT V Q YM+ R+ +H S ES SRV++W+ EAV+LV M QI + +FFEVRR V Sbjct: 17 NSVSCYYITVDADAEECFFDKVESGTKMSLTFEI-AEGGFLDIDVRIVGPDGKVIYQGERESSGKYTFAAHANGIYTYCFSN----KMSTMTPKVVMFNMQIGESAKHEENQGEESSTKLEDMIRELSGALTGVKQEQEYMQLRDRIHRSINESTNSRVVMWSFFEAVILVAMTFGQIYYLKRFFEVRRVV 202
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_013086359.1 (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Biomphalaria glabrata]) HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19 Identity = 70/209 (33.49%), Postives = 108/209 (51.67%), Query Frame = 0 Query: 25 LVLYPATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEE---SIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 +VL +TF++ LL L S+ + + + ECF T G FEV EG + +++ + GPDGK + +S ++F A +G+Y C N + T ++V FS +D A EE + +L E+ N L+ LT V Q YM RE +H S ++ SRV++W+ EA+VLV M + Q+ + +FFEVRR V Sbjct: 2 IVLNISTFIVTLLSLIQSSEQYFISIDAHAEECFFDKVTSGTKMSLMFEV-AEGGFLDIDIKIYGPDGKVIHSGDRESNGKYTFAAHMDGNYKYCFSNA----MSTMTPKIVVFSIDIGE-KPKDAAGEEGDANQNKLTEMINELSTALTGVKHEQEYMEVRERIHRSINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRVV 204
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_022536488.1 (transmembrane emp24 domain-containing protein 2 isoform X2 [Astyanax mexicanus]) HSP 1 Score: 105.1 bits (261), Expect = 2.900e-19 Identity = 68/203 (33.50%), Postives = 103/203 (50.74%), Query Frame = 0 Query: 29 PATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 P LLLL L S + + V V ECF G FEV EG + ++V + GPDGKQ+++ +S +S A +G Y C N ++ T ++V F+ + +D+ +E +L E+ N L +T V Q YM RE +H + ++ SRV++W+ EA+VLV M + QI + +FFEVRR V Sbjct: 5 PELALLLLAALAASASGYFVSVDAHAEECFYERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 202
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_004595402.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 [Ochotona princeps]) HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19 Identity = 66/203 (32.51%), Postives = 104/203 (51.23%), Query Frame = 0 Query: 29 PATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 PA L+LL L + + + V + ECF T G FEV EG + ++V + GPD K +++ +S ++F A +G Y C N R+ T ++V F+ + +D+ +E +L E+ N L +T V Q YM RE +H + ++ SRV++W+ EA+VLV M + QI + +FFEVRR V Sbjct: 4 PAELLVLLAALLATASGYFVSIDAHAEECFFERVTSGTKMGLIFEV-AEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSN----RMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_017549184.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Pygocentrus nattereri]) HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19 Identity = 64/199 (32.16%), Postives = 104/199 (52.26%), Query Frame = 0 Query: 33 LLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 +LLL ++ + + + V + ECF G FEV EG + ++V + GPDGKQ+++ +S +S A +G Y C N ++ T ++V F+ + D+D+ +E +L E+ N L +T V Q YM RE +H + ++ SRV++W+ EA+VLV M + QI + +FFEVRR V Sbjct: 8 VLLLAVMVATASGYFVSIDAHAEECFFERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKDQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_018560956.1 (transmembrane emp24 domain-containing protein 2 [Anoplophora glabripennis]) HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19 Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 0 Query: 31 TFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 T +L + H + A+ + V ECF G FE+ EG + ++V + GPDGK +++ ++ ++F A A G YT C N ++ T ++V F+ + E+ +L ++ L+ LT V Q YM+ R+ +H S ES SRV++W+ EA++LV M + Q+ + +FFEVRR V Sbjct: 7 TLFMLFTICVHQSLAYFITVDAHAEECFFDKVEAGTKMGLTFEI-AEGGFLDIDVRIIGPDGKTIYQGERETSGKYTFAAHAQGVYTYCFSN----KMSTMTPKVVMFNMAIGESPKAEHQEGETTNKLEDMIRELSASLTGVKQEQEYMQVRDRIHRSINESTNSRVVMWSFFEALILVAMTMGQVYYLKRFFEVRRVV 201
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_022110308.1 (transmembrane emp24 domain-containing protein 2-like [Acanthaster planci]) HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19 Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 0 Query: 42 STTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 S + + + ECF T G FEV EG + ++V + GPD K ++ +S ++F A +G Y C N R+ T ++V FS D D+ + +EE +L ++ N L GLT V Q YM RE +H S ++ SRV++W+ E++VLV M + Q+ + +FFEVRR V Sbjct: 19 SIKGYFIAIDAHAEECFHDKVTSGTKMALTFEV-AEGGFLDIDVKITGPDNKVIYSGERESNGKYTFSAHMDGQYRYCFSN----RMSTMTPKVVMFSIDIGDSPKDQSMDTEEHHNKLEDMINQLATGLTAVKHEQEYMEVRERVHRSINDNTNSRVVLWSFFESLVLVAMTLGQVYYLKRFFEVRRVV 203
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_005988996.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Latimeria chalumnae]) HSP 1 Score: 103.2 bits (256), Expect = 1.100e-18 Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 0 Query: 32 FLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 FL LL L + + + V + ECF T G FEV EG + ++V + GPDGK +++ +S ++F A +G Y C N ++ T ++V F+ + +D+ +E +L E+ N L +T V Q YM RE +H + ++ SRV++W+ EA+VLV M + QI + +FFEVRR V Sbjct: 7 FLALLALFSATASGYFVSIDAHADECFFERVTSGTKMGLIFEV-AEGGFLDIDVEITGPDGKGIYKGDRESSGKYTFAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
BLAST of NO01G01940 vs. NCBI_GenBank
Match: XP_010795826.1 (PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Notothenia coriiceps]) HSP 1 Score: 102.8 bits (255), Expect = 1.400e-18 Identity = 64/202 (31.68%), Postives = 104/202 (51.49%), Query Frame = 0 Query: 30 ATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRT-DVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231 A ++LL +L + + + V + ECF G FEV EG + ++V + GPDGKQ+++ +S +S A +G Y C N ++ T ++V F+ + +D+ +E +L E+ N L +T V Q YM RE +H + ++ SRV++W+ EA+VLV M + QI + +FFEVRR V Sbjct: 5 AELIVLLAVLSSTASGYFVSIDAHAEECFYERVNSGTKMGLMFEV-AEGGFLDIDVEITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSN----KMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201 The following BLAST results are available for this feature:
BLAST of NO01G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01940 ID=NO01G01940|Name=NO01G01940|organism=Nannochloropsis oceanica|type=gene|length=693bpback to top protein sequence of NO01G01940.1 >NO01G01940.1-protein ID=NO01G01940.1-protein|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bpback to top Synonyms
Publications
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