NO01G01900, NO01G01900 (gene) Nannochloropsis oceanica

Overview
NameNO01G01900
Unique NameNO01G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length663
Alignment locationchr1:478349..479011 +

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Properties
Property NameValue
DescriptioncGMP-dependent 3',5'-cGMP phosphodiesterase A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:478349..479011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0007154cell communication
Homology
BLAST of NO01G01900 vs. NCBI_GenBank
Match: OQS07555.1 (cGMP-dependent 3',5'-cGMP phosphodiesterase [Thraustotheca clavata])

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-9
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSM----GDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLL 168
            +++VH +   +P  S L+ AP GV++T+ VP + PE    + VL LV  I    DLTL  A  L+++  +  Y    VV+  G+    FY++  G  +  +P +D    D  +++ +++  V  S     GDYF         +  G   + + T V L+ F  S++   L
Sbjct:  432 VFVVHTAAKDIPADSGLRAAPEGVQHTIIVPTERPESASTLEVLDLVRKIDIFVDLTLTDAYELIQMAKRVTYNKTSVVLDYGASADTFYIVIAGEAQAIFPPED----DMHQHSRKRLSTVPRSKKYVPGDYFDLQYLLTPNSIAGCTIIASST-VSLLEFNASDMSWFL 597          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: PKN19715.1 (cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodiesterase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6])

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-9
Identity = 51/175 (29.14%), Postives = 82/175 (46.86%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAF-----APLTATPGHDEVRALT---DVELIVFAGSELRHLL 168
            MYLVHV+  ++P  S L++AP G+ NT+E+ V      +AI +L     +    +L   +AR  L +   + Y A +V+  KG +   FYV+  G++++T     +   D               +G YFGE +         TAT    +V+ LT   D  L +  G+E  +LL
Sbjct:  427 MYLVHVNPESIPCESSLRIAPTGLANTIELDVKSIPHDEAIEMLDTFSRVELFENLAFEKAREFLLVAGVEHYKASDVIFSKGDKGDKFYVVMSGIVDITLGGKMITTYD---------------VGGYFGEKSLFLDENRTATAT-SRTDVKLLTIRKDEMLSLIRGTESEYLL 585          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: PKL38890.1 (cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodiesterase [Spirochaetae bacterium HGW-Spirochaetae-1])

HSP 1 Score: 71.6 bits (174), Expect = 3.400e-9
Identity = 53/193 (27.46%), Postives = 95/193 (49.22%), Query Frame = 0
Query:    3 LVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSS 196
            + H+++   PK S+L +A  G+++TL      P F KA  +L +++++ F+ ++T+ ++   LEI  ++RY  G  ++ KG+R   FY++  G + V     D   LD+         R  +   DYFGE A   LT      +V A TDV L      +  + +A G    + LL+     +S + +  S++
Sbjct:  428 IYHIAKKDFPKKSRLTLARFGMEHTLYFKARPPRFEKAYQILGILKNLDFMREITIDKSMEFLEIVEEERYRKGARILEKGARGDKFYIILSGNVSV-----DSGGLDQ---------RKIYGTYDYFGEVAV--LTEQTRAADVFAETDVVLFTIERDKFLNFIA-GTEFEKTLLRLIKIRTSETWNLLSNN 603          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_008861208.1 (hypothetical protein H310_00276 [Aphanomyces invadans] >ETW09797.1 hypothetical protein H310_00276 [Aphanomyces invadans])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRD 105
            MY+VH +   +P  S L+ AP GV+NT+ VP D+PE    + VL L+  I    DLTL  A  ++++  +  ++ G+ V   G     FY++  G  +  +  D
Sbjct:  438 MYVVHTAAKDIPVDSGLRPAPEGVQNTIIVPTDLPESASTMEVLDLIRKIDIFGDLTLNDAYEVIQMAQRVTFSKGDTVERSGEAADKFYIVIAGEAQCIFSHD 541          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: CBJ32522.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.5 bits (171), Expect = 7.500e-9
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIG 96
            +++VHVSE ++PK S LKVAP GVKNT+ +        +A+ VL L+  +  L+ +++ QAR LLE+  + R+ A  +V  +    T+F ++  G
Sbjct:  809 VFVVHVSESSIPKDSGLKVAPAGVKNTMRLDTIANIHEEALDVLDLICSVGILSGVSVAQARSLLEVARQVRFEANAIVQHRDIDTTDFAIICHG 903          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_009532024.1 (hypothetical protein PHYSODRAFT_515964 [Phytophthora sojae] >EGZ11691.1 hypothetical protein PHYSODRAFT_515964 [Phytophthora sojae])

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVD-VPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRD 105
            +Y+VH +   +P    L+ AP GV NT+ + V  +PE   A+ +L LV  +   A+LTL  A  +L++  K  YA GE+V   GS    FY++ +G  +  + +D
Sbjct:  399 VYVVHTAAKDLPDNCGLRGAPEGVHNTITLDVPRLPEHAGALEILDLVRKVDLFAELTLNHAYEILQMARKVEYAKGEIVSKTGSVGDTFYIIIVGEAQAVHSKD 503          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_009830446.1 (hypothetical protein H257_06784 [Aphanomyces astaci] >ETV80522.1 hypothetical protein H257_06784 [Aphanomyces astaci])

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8
Identity = 37/134 (27.61%), Postives = 66/134 (49.25%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRV----HWSMGDYF 131
            MY+VH +   +P  S L+ AP GV+NT+ VP ++PE    + VL L+  I    DLTL  A  ++++  +  ++  E V   G     FY++  G  +  +P +         +T +++  +     +  G+YF
Sbjct:  439 MYVVHTAAKDIPANSGLRAAPEGVQNTIIVPTELPESASTMEVLDLIRKIDIFGDLTLNDAYEVIQMAKRVTFSKAETVQQAGQPTDKFYIVIAGEAQCHFPPEHAPPNVPSGSTRKRLTNIPRSKKYVAGNYF 572          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: WP_000910894.1 (cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodiesterase [Leptospira interrogans])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 42/149 (28.19%), Postives = 81/149 (54.36%), Query Frame = 0
Query:    5 HVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDV 154
            H++   +P G+KLK+A  G++NTL   +  P+  +A ++L ++  I       + QA+ +L I  ++RY  G+ ++ KG+    FY+++ G ++        + L+++E  +  +KR  +   +YFGEA+   +   P   +V A TDV
Sbjct:  425 HIARKDMPTGTKLKLAKFGIENTLYPEITPPKHIEAYNLLDVLTQIDIFHGFPIEQAKEILLIVNEERYKRGDQIIRKGTPGDKFYIIASGNVK-------FEGLNQDETGQGPIKR--YGTYEYFGEASL--VLDLPRAADVYAETDV 562          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_008613275.1 (hypothetical protein SDRG_09139 [Saprolegnia diclina VS20] >EQC33152.1 hypothetical protein SDRG_09139 [Saprolegnia diclina VS20])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYP----RDDLDDLDEEENTEEKVKRVHWSMGDYF 131
            +++VH +   +P  S L+ AP GV+NT+ VP + PE    + VL LV  I    DLTL  A  L+++  +  YA    V   GS   +FY++  G  +  +P    R D  D  +  +T  + KR  +  GDYF
Sbjct:  431 IFVVHTAAKDIPADSGLRPAPEGVQNTIIVPTERPESASTLEVLDLVRKIDIFVDLTLADAYELVQMARRVDYAKAATVQEHGSIARSFYIVVAGEAQAVFPPLGARTDTSD-RKRLSTIPQSKR--YIPGDYF 561          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: KRX00899.1 (Cyclic nucleotide-binding protein [Pseudocohnilembus persalinus])

HSP 1 Score: 68.2 bits (165), Expect = 3.700e-8
Identity = 46/192 (23.96%), Postives = 98/192 (51.04%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEV-PVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSF 192
            +YL+H+++  + K S LK+  +GV+NT+ + P +  +       + L+ +I  +  LT+     LL+    ++Y  G+++V +G+    FY++  G+  +          +++EN  E+    ++S+GDYFGE++            V+A+TD+ L+    ++   +  DG     G +  ++++ S+S  F
Sbjct:  573 LYLIHIAQKDLLKNSGLKIVGMGVENTIIILPSNGVKNIDLKRRMELLSNIDIMQSLTIKNINWLLDSIVVEKYFPGDLIVEEGNLGDKFYIIESGVARIF--------SNKKENQFER----YFSVGDYFGESSLLQNQLLKRQASVQAVTDMVLLTLKRNDFWFVFGDGMD-GPGKIIMKFYNLSNSRQF 751          
The following BLAST results are available for this feature:
BLAST of NO01G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQS07555.12.600e-928.07cGMP-dependent 3',5'-cGMP phosphodiesterase [Thrau... [more]
PKN19715.12.600e-929.14cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodi... [more]
PKL38890.13.400e-927.46cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodi... [more]
XP_008861208.15.800e-932.69hypothetical protein H310_00276 [Aphanomyces invad... [more]
CBJ32522.17.500e-936.84conserved unknown protein [Ectocarpus siliculosus][more]
XP_009532024.12.200e-834.29hypothetical protein PHYSODRAFT_515964 [Phytophtho... [more]
XP_009830446.12.200e-827.61hypothetical protein H257_06784 [Aphanomyces astac... [more]
WP_000910894.12.900e-828.19cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodi... [more]
XP_008613275.12.900e-833.58hypothetical protein SDRG_09139 [Saprolegnia dicli... [more]
KRX00899.13.700e-823.96Cyclic nucleotide-binding protein [Pseudocohnilemb... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01900.1NO01G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01900.1NO01G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01900 ID=NO01G01900|Name=NO01G01900|organism=Nannochloropsis oceanica|type=gene|length=663bp
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG
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protein sequence of NO01G01900.1

>NO01G01900.1-protein ID=NO01G01900.1-protein|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDI
HFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVT
YPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRAL
TDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSSMRLEL
LLTFDYTLNSLALKSSNLRA*
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Synonyms
Publications