NO01G01900, NO01G01900 (gene) Nannochloropsis oceanica

Overview
NameNO01G01900
Unique NameNO01G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length663
Alignment locationchr1:478349..479011 +

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Properties
Property NameValue
DescriptioncGMP-dependent 3',5'-cGMP phosphodiesterase A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:478349..479011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0007154cell communication
Homology
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_003290682.1 (hypothetical protein DICPUDRAFT_98774 [Dictyostelium purpureum] >EGC32794.1 hypothetical protein DICPUDRAFT_98774 [Dictyostelium purpureum])

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14
Identity = 50/158 (31.65%), Postives = 89/158 (56.33%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVF 159
            +YLVH+SE  +P+GS LK+A  GV++TL + V      +A+ +L L+E +     + L QA  +L+   K++Y+ G +++ + + P  FY+++ G++ VT     + DL           + +  +GDYFGE +   +  T     V+A+TDVE++ F
Sbjct:  491 LYLVHISEHTLPQGSGLKIAKEGVQHTLSLDVIRSSHSEAVDILKLIESVDIFRSIPLTQACEILQTATKRKYSQGSLIIARDTEPDAFYIIASGVVCVT-----IGDL-----------KKNLIVGDYFGEMSL--VMGTLRSANVQAVTDVEVLSF 630          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_644314.1 (cGMP-stimulated cGMP phosphodiesterase [Dictyostelium discoideum AX4] >Q8MLZ3.1 RecName: Full=cGMP-dependent 3',5'-cGMP phosphodiesterase A; AltName: Full=Cyclic GMP-binding protein A; AltName: Full=Phosphodiesterase 5; Short=DdPDE5; AltName: Full=Phosphodiesterase D >AAM34039.1 cGMP-stimulated cGMP-specific phosphodiesterase [Dictyostelium discoideum] >AAL06059.1 cGMP-stimulated cGMP phosphodiesterase [Dictyostelium discoideum] >EAL70084.1 cGMP-stimulated cGMP phosphodiesterase [Dictyostelium discoideum AX4])

HSP 1 Score: 85.1 bits (209), Expect = 2.900e-13
Identity = 52/158 (32.91%), Postives = 84/158 (53.16%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVF 159
            +YLVH+SE  +P GS LK+A  GV +TL + V      +A+ +L LVE +     + L QA  +L+   K++Y+ G V++ + + P  FYV++ G++ V              N  E  K +   +GDYFGE +   +        V+A+TDVE++ F
Sbjct:  556 LYLVHISEHTLPAGSGLKIAKEGVAHTLSLDVMKSSHSEAVDILKLVESVDIFRSIPLTQACEILQTATKRKYSQGSVIIARDTEPDAFYVVASGVVCV--------------NIGELKKNL--IVGDYFGEMSL--VMGGLRSANVQAVTDVEVLSF 695          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_020437738.1 (cGMP-stimulated cGMP phosphodiesterase [Heterostelium album PN500] >EFA85631.1 cGMP-stimulated cGMP phosphodiesterase [Heterostelium album PN500])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFA 160
            +YLVH+SE ++P  S LK+A  GV +TL + V+     +A+ +L L+E +     + L Q   +L    +K Y  G V++ + + P  F+V++ G+++V+         D E+N            GDYFGE +   +       +V A+TDVE++VF+
Sbjct:  653 LYLVHISEHSLPTSSGLKIAREGVNHTLRLDVEKQTHSEAVDILKLMESVDIFRSIPLSQVAEILRTANRKTYPQGSVIIAQHTEPDAFFVVASGIVKVSV-------ADLEKNL---------IAGDYFGEMSL--IMGGLRSAKVSAVTDVEVLVFS 793          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_012749793.1 (hypothetical protein SAMD00019534_105010 [Acytostelium subglobosum LB1] >GAM27326.1 hypothetical protein SAMD00019534_105010 [Acytostelium subglobosum LB1])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFA 160
            +YLVH+SE ++P  S LK+A  GV++TL + V+     +A+ +L L+E +     + L QA  +L    +K Y  G V++ + S P  F+V++ G+++V+     + DL++           +   GDYFGE +   +       +V A+TDV ++VF+
Sbjct:  447 LYLVHISEQSLPADSGLKIAHEGVRHTLRLDVEKHMHSEAVDILKLMESVDIFRSIPLSQAAEILRTATRKTYPQGSVIIAQDSEPDAFFVVASGIVKVS-----VGDLEK-----------NLIAGDYFGEMSL--IMGGRRSAKVSAVTDVGVLVFS 587          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: OIP22577.1 (hypothetical protein AUK22_10470, partial [bacterium CG2_30_54_10])

HSP 1 Score: 79.0 bits (193), Expect = 2.100e-11
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIV 158
            +YL+HVSE A+P GS+L+ AP G   T+ +PV  P   +A+  L ++  I   + L + +AR  L +   +R+A G+VV+ KG+    F+++  G   +   RDD            K+K   ++  DY GE +   +   P + +V A TD++++V
Sbjct:  197 LYLIHVSEKAIPPGSRLRKAPDGPDETIVIPVQPPLTNEALEYLDVLNHIDLFSGLPIEKAREFLTLVKTERFAGGDVVIKKGTVGDRFFMIVNGRANIV--RDD-----------HKIK--VYANNDYIGETSM--ILNVPRNADVVAETDLKVLV 336          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: KYQ93933.1 (cGMP-stimulated cGMP phosphodiesterase [Tieghemostelium lacteum])

HSP 1 Score: 78.2 bits (191), Expect = 3.600e-11
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVF 159
            +YLVH+SE ++P  S LK+A  GV +TL + V      +AI +L L++ +     + L QA  +L    +KRY    V++ + S P  F+V++ G+++V+                  VK+ +  +GDYFGE +   +        V A+T+VE++VF
Sbjct:  494 LYLVHISEHSLPVNSGLKIAKEGVDSTLRLDVARQSHSEAIDILKLMDSVDIFRIMPLSQACDILRTATRKRYPQDSVIIAQDSEPDAFFVVASGVVQVSI---------------GSVKK-NLIVGDYFGEMSL--VMGGKRSAMVTAVTEVEVLVF 633          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: OQS00888.1 (cGMP-dependent 3',5'-cGMP phosphodiesterase [Achlya hypogyna])

HSP 1 Score: 77.0 bits (188), Expect = 8.000e-11
Identity = 45/167 (26.95%), Postives = 75/167 (44.91%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLL 168
            +Y+VH +   +P  S L+ AP GV+NT+ VP + PE    + VL LV  I    DLTL  A  L+++  +  Y+    V   G+    FY++  G  +  +P     D  + +      K   +  GDYF            G+  + + T + L+ F  +++   L
Sbjct:  422 IYVVHTAAKDIPADSGLRAAPEGVQNTIIVPTERPESASTLEVLDLVRKIDIFVDLTLSDAYELIQMARRHTYSKSTTVQEAGAAAGTFYIIIAGEAQAIFPSGSRTDTCDRKRLSTVPKSKRYIPGDYFDLQYLLTPNMAAGYSVIASST-LSLLEFNAADINWFL 587          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: OQY29159.1 (hypothetical protein B6244_04800 [Candidatus Cloacimonetes bacterium 4572_55])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 55/229 (24.02%), Postives = 106/229 (46.29%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLLADGPSV---------SRGLLQCRYFSSSSSLSF--PSSSMRLELLLTF-DYTLNSLALKSSN 218
            +Y+VHV +   P+G  LK+AP  ++N L +PV  P F +   VL  +  I F++D  + +   +L    +K + AGEV++ +      F+++  G +E+     +L               + +   DY+GE   A ++  P   +V A TDVE++     ++     +G  V         +R L  C    SS    F  P+   +++ ++++  Y+  S+ ++S +
Sbjct:  426 VYVVHVGKQNFPEGCGLKLAPDSIENYLSIPVKTPRFHEGSQVLRTLSKIDFMSDFPVSKLIDILPSLKRKNFEAGEVIMRQNEVGNEFHIIVYGKVEIIRDNKNL---------------ITYGQNDYYGE--MATISGEPRSADVLAKTDVEVLAI-NEKIFLAFIEGTHVVEYLKKLERTRRLDSCALLESSPVFGFLTPTQITQMQAMMSYVSYSKESVLIESGH 636          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: OHD16385.1 (hypothetical protein A2Y37_03850 [Spirochaetes bacterium GWB1_60_80] >OHD28769.1 hypothetical protein A2004_09215 [Spirochaetes bacterium GWC1_61_12] >OHD43412.1 hypothetical protein A2087_02640 [Spirochaetes bacterium GWD1_61_31] >OHD46599.1 hypothetical protein A2Y35_14840 [Spirochaetes bacterium GWE1_60_18] >OHD61033.1 hypothetical protein A2Y32_05115 [Spirochaetes bacterium GWF1_60_12])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 52/191 (27.23%), Postives = 97/191 (50.79%), Query Frame = 0
Query:    5 HVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSS 196
            H++E   PK +KL +A  G+++TL+  V  P+F K   +L L++ + F  D+ + +A+  + I  ++ Y  G++++ K S    FY++ +G + VT       DL E        K+++ S  DYFGE A   +T +    +V A TDV L      +  + ++ G    + L++     +S + +  S+S
Sbjct:  421 HIAEKDFPKDTKLTLARFGIEHTLQFKVRQPDFEKDYQILGLLKHLDFFQDINIGKAQEFITIVQEEHYRKGQLIIKKDSPGDKFYIIYMGNVSVTG-----HDLAE--------KKIYGSF-DYFGEVAL--VTQSRRAADVYAETDVVLYTIERDKFLNFIS-GTEFEKMLVRLARIRNSETWNLLSNS 594          
BLAST of NO01G01900 vs. NCBI_GenBank
Match: XP_001449692.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK82295.1 unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-9
Identity = 54/175 (30.86%), Postives = 85/175 (48.57%), Query Frame = 0
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTL-----EVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVFAGSELRHLLADG 171
            MYLVHV+   V KGS LKVA  G++NTL      V  D+P  RK    + ++  I     LTL  A+ L++    ++Y  GE+V+ +      FY++  GL +V          D++EN  ++    +   GDYFGE+A   +        V A+TD+ ++     +   +  DG
Sbjct:  524 MYLVHVAAKDVLKGSGLKVAKPGIENTLILIRPNVQQDIPLNRK----MDIISRIDIFDKLTLNNAKFLMDALKLEKYKEGELVIQENQEGHKFYIIESGLAKVF--------SDQKENKFQR----YLQSGDYFGESAL--IQTGRRRASVLAVTDLRVLSLDKHDFWFIFGDG 680          
The following BLAST results are available for this feature:
BLAST of NO01G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_003290682.11.600e-1431.65hypothetical protein DICPUDRAFT_98774 [Dictyosteli... [more]
XP_644314.12.900e-1332.91cGMP-stimulated cGMP phosphodiesterase [Dictyostel... [more]
XP_020437738.11.500e-1230.82cGMP-stimulated cGMP phosphodiesterase [Heterostel... [more]
XP_012749793.11.500e-1230.82hypothetical protein SAMD00019534_105010 [Acytoste... [more]
OIP22577.12.100e-1131.21hypothetical protein AUK22_10470, partial [bacteri... [more]
KYQ93933.13.600e-1131.01cGMP-stimulated cGMP phosphodiesterase [Tieghemost... [more]
OQS00888.18.000e-1126.95cGMP-dependent 3',5'-cGMP phosphodiesterase [Achly... [more]
OQY29159.11.800e-1024.02hypothetical protein B6244_04800 [Candidatus Cloac... [more]
OHD16385.11.500e-927.23hypothetical protein A2Y37_03850 [Spirochaetes bac... [more]
XP_001449692.12.600e-930.86hypothetical protein [Paramecium tetraurelia strai... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01900.1NO01G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01900.1NO01G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01900 ID=NO01G01900|Name=NO01G01900|organism=Nannochloropsis oceanica|type=gene|length=663bp
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG
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protein sequence of NO01G01900.1

>NO01G01900.1-protein ID=NO01G01900.1-protein|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDI
HFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVT
YPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRAL
TDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSSMRLEL
LLTFDYTLNSLALKSSNLRA*
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Synonyms
Publications