NO01G01860, NO01G01860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_005855809.1 (hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526] >EKU20556.1 hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526] >EWM29209.1 protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 3.600e-63 Identity = 115/153 (75.16%), Postives = 136/153 (88.89%), Query Frame = 0 Query: 1 MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFSIGVFGGRNKKEKE 154 MAASS R+V+LN+YELTDE+G+GSWMRRVGLG WHTGVEVGGVEYTFAQNG+FFHVP+ P+VA+GQV++LKES+ MGEHVGSANEVHGIIN+LREEF AY++T +NCNH+SDALC+ LVGAS+PAWVNRPA+I S+FS FGG K KE Sbjct: 1 MAASSRRDVILNVYELTDEQGTGSWMRRVGLGAWHTGVEVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS---FGGNKDKAKE 150
BLAST of NO01G01860 vs. NCBI_GenBank
Match: EWM29208.1 (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana]) HSP 1 Score: 181.4 bits (459), Expect = 2.700e-42 Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 0 Query: 39 EVGGVEYTFAQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFSIGVFGGRNKKEKE 154 +VGGVEYTFAQNG+FFHVP+ P+VA+GQV++LKES+ MGEHVGSANEVHGIIN+LREEF AY++T +NCNH+SDALC+ LVGAS+PAWVNRPA+I S+FS FGG K KE Sbjct: 9 KVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS---FGGNKDKAKE 120
BLAST of NO01G01860 vs. NCBI_GenBank
Match: CBN75008.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 115.2 bits (287), Expect = 2.300e-22 Identity = 60/156 (38.46%), Postives = 91/156 (58.33%), Query Frame = 0 Query: 3 ASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREE-FGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFSIGVFGGRNKKEKEGEKE 158 +S R V LN+Y+L + S SW++ +GLG +H+G+E+GGVEYTF++ G+ H PR G ++ K + +G+ +G+ +V I+N L+ E F Y++ NCNHF D L L G IP WVNR A IA+ + G + +KEG + Sbjct: 2 SSGVRPVQLNVYDLHE---SNSWLQHIGLGAYHSGLEIGGVEYTFSEAGVAQHPPRQ---IAGDGVSFKTTEVLGDFIGTMPDVRRILNGLKAEGFAEGEYDVIRNNCNHFCDELAFALTGKRIPPWVNRAATIAT------WAGLGESKKEGAND 145
BLAST of NO01G01860 vs. NCBI_GenBank
Match: CBJ48730.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21 Identity = 63/134 (47.01%), Postives = 82/134 (61.19%), Query Frame = 0 Query: 8 EVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFA-QNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFS 141 EV LN+Y+L+ G +GLG +H+G+EV G EYTFA GIF H PR A G +E++ MG G ++ + I+ LREEFGP+ YN+ RNCN FS ALC+ LVG IP +VNR A + S FS Sbjct: 10 EVTLNVYDLSPVNEFG---HPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRK---APG--ARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFS 135
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_008659205.1 (deSI-like protein At4g17486 [Zea mays]) HSP 1 Score: 107.1 bits (266), Expect = 6.400e-20 Identity = 65/150 (43.33%), Postives = 85/150 (56.67%), Query Frame = 0 Query: 2 AASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTF-----AQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVG-ASIPAWVNRPAKIASVFSIGVFG 146 A SS V LN+Y++T G W+ GLG +H+GV+V GVEY + A +GIF VPR G +ES+ +G S EV ++ EL EF +AYN+ +RNCNHF DA C+ LV A IP WVNR AKI F+ + G Sbjct: 25 APSSSSPVFLNVYDVTPANGYARWL---GLGVYHSGVQVHGVEYAYGAHDGASSGIFEVVPRR---CPG--YAFRESVAVGATELSRGEVRALMAELAAEFPGDAYNLVSRNCNHFCDAACRRLVARARIPRWVNRLAKIGVAFTCVIPG 166
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_008605728.1 (hypothetical protein SDRG_01949 [Saprolegnia diclina VS20] >EQC40884.1 hypothetical protein SDRG_01949 [Saprolegnia diclina VS20]) HSP 1 Score: 106.3 bits (264), Expect = 1.100e-19 Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 0 Query: 1 MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQN-GIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFS 141 MA V+LN+Y+L D + ++ +GLG +H+GV++ G EY+FA GIF P+ A G V +ES+PMG GS+N+ +++ELR EF + YN+ +NCN FS+ LC L+G IPA+VNR A + S S Sbjct: 1 MAKKGKTAVILNVYDLMD---ANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLS 133
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_012212031.1 (hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65] >KDO17263.1 hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 106.3 bits (264), Expect = 1.100e-19 Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 0 Query: 1 MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQN-GIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFS 141 MA V+LN+Y+L + + ++ +GLG +H+GV++ G EY+FA GIF P+ A G V +ES+PMG GS+N+ +++ELR EF + YN+ +NCN FS+ LC LVG IPA+VNR A + S S Sbjct: 1 MAKKGKTAVILNVYDLVE---ANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLVGVPIPAYVNRMAYLGSFLS 133
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_002948920.1 (hypothetical protein VOLCADRAFT_73996 [Volvox carteri f. nagariensis] >EFJ49855.1 hypothetical protein VOLCADRAFT_73996 [Volvox carteri f. nagariensis]) HSP 1 Score: 105.9 bits (263), Expect = 1.400e-19 Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 0 Query: 9 VVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFA-----QNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIA 137 VVLNIY+L + +W G+G +H+GVEV GVEY + +G+F PR A GQV+ +ES+PMGE + E+H ++ + E+ N Y++ RNCNHF++ LC+ LVG P+W+NR A IA Sbjct: 4 VVLNIYDLAPQ---NNWTYWCGVGIFHSGVEVYGVEYAYGGHDYDYSGVFATNPR---DAPGQVV-FRESIPMGETTMTQQEIHHLVQRMGNEYKGNNYHLLQRNCNHFANDLCRQLVGRDAPSWINRLAGIA 129
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_012198138.1 (hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65] >KDO30954.1 hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 104.8 bits (260), Expect = 3.200e-19 Identity = 58/141 (41.13%), Postives = 86/141 (60.99%), Query Frame = 0 Query: 1 MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQN-GIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFS 141 MA V+LN+Y+L + + ++ +GLG +H+GV++ G EY+FA GIF P+ A G V +ES+PMG GS+N+ +++ELR EF + YN+ +NCN FS+ LC L+G IPA+VNR A + S S Sbjct: 1 MAKKGKTAVILNVYDLME---ANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLS 133
BLAST of NO01G01860 vs. NCBI_GenBank
Match: XP_021304646.1 (deSI-like protein At4g17486 [Sorghum bicolor] >KXG19474.1 hypothetical protein SORBI_3010G064100 [Sorghum bicolor]) HSP 1 Score: 104.8 bits (260), Expect = 3.200e-19 Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 0 Query: 9 VVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTF-----AQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNITNRNCNHFSDALCKTLVG--ASIPAWVNRPAKIASVFSIGVFG 146 V LN+Y++T G W+ GLG +H+GV+V GVEY + A +GIF VPR G T +ES+ +G S EV ++++L +F +AYN+ +RNCNHF DA C+ LV A IP WVNR AKI VF+ + G Sbjct: 38 VFLNVYDVTPANGYARWL---GLGVYHSGVQVHGVEYAYGAHDGASSGIFEVVPRR---CPG--YTFRESVLVGTTELSRAEVRALMSDLAADFPGDAYNLVSRNCNHFCDAACRRLVAGRARIPRWVNRLAKIGVVFTCVIPG 173 The following BLAST results are available for this feature:
BLAST of NO01G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01860 ID=NO01G01860|Name=NO01G01860|organism=Nannochloropsis oceanica|type=gene|length=3224bpback to top protein sequence of NO01G01860.1 >NO01G01860.1-protein ID=NO01G01860.1-protein|Name=NO01G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bpback to top protein sequence of NO01G01860.2 >NO01G01860.2-protein ID=NO01G01860.2-protein|Name=NO01G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=251bpback to top Synonyms
Publications
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