NO01G01810, NO01G01810 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G01810
Unique Name	NO01G01810
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1634
Alignment location	chr1:457243..458876 -

Link to JBrowse

Properties


Property Name	Value
Description	Dead deah box rna

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:457243..458876 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif
IPR011545	DEAD/DEAH_box_helicase_dom
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd

Homology

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BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_008897447.1 (hypothetical protein PPTG_05608 [Phytophthora parasitica INRA-310] >ETK74154.1 hypothetical protein L915_18966 [Phytophthora parasitica] >ETL27584.1 hypothetical protein L916_18864 [Phytophthora parasitica] >ETN17951.1 hypothetical protein PPTG_05608 [Phytophthora parasitica INRA-310] >ETP03683.1 hypothetical protein F441_19368 [Phytophthora parasitica CJ01A1] >KUF93032.1 hypothetical protein AM588_10007111 [Phytophthora nicotianae] >KUG01370.1 ATP-dependent RNA helicase DDX47 [Phytophthora nicotianae] >KUG01918.1 ATP-dependent RNA helicase DDX47 [Phytophthora nicotianae])

HSP 1 Score: 566.6 bits (1459), Expect = 7.900e-158
Identity = 283/394 (71.83%), Postives = 333/394 (84.52%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   29 SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 420

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BLAST of NO01G01810 vs. NCBI_GenBank
Match: ETO62611.1 (hypothetical protein F444_19500 [Phytophthora parasitica P1976])

HSP 1 Score: 566.6 bits (1459), Expect = 7.900e-158
Identity = 283/394 (71.83%), Postives = 333/394 (84.52%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   29 SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 420

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: ETP31833.1 (hypothetical protein F442_19320 [Phytophthora parasitica P10297])

HSP 1 Score: 566.6 bits (1459), Expect = 7.900e-158
Identity = 283/394 (71.83%), Postives = 333/394 (84.52%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   29 SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 420

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: POM58612.1 (DEAD/DEAH box RNA helicase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 566.2 bits (1458), Expect = 1.000e-157
Identity = 282/394 (71.57%), Postives = 334/394 (84.77%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA +A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E+++
Sbjct:   22 SFAELGVDSAICEAISAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPA--ERNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKD 413

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: CCA26186.1 (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 564.7 bits (1454), Expect = 3.000e-157
Identity = 279/395 (70.63%), Postives = 335/395 (84.81%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELREL 460
            TFE+LGV   LCEA  ++GW KP+ IQQ+AI   L GRD+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q IALARKPHI++ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP+   R T+LFSATMTSKVAKLQRASL +P+K+E++ KF+TP  L Q YLFIPAK+KDCYL+Y+LNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM+QP RLGAL+KFK+  R IL+ TDVASRGLDIP+VD+V+N+DIP+HGKDYIHRVGRTAR      +++FVTQYDVE+YQR+E LLG KL  Y  +E+TVLI+ ERV EAQRIA  E++EL
Sbjct:   30 TFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPS--ERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRIEFLLGKKLDAYPCDEQTVLIMQERVGEAQRIATNEMKEL 422

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_009517012.1 (hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae] >EGZ29737.1 hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae])

HSP 1 Score: 564.7 bits (1454), Expect = 3.000e-157
Identity = 292/429 (68.07%), Postives = 346/429 (80.65%), Query Frame = 0

Query:   30 NKEAAAXXXXQPSVSQKNDDEIPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +K AAA    Q      N+      D EG      +F+ELGV   +CEA  A+GW +P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:    4 SKPAAASSSSQAPADAHNE------DGEGFR-GSKSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLRNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPA--ERNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 423

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: ETL80855.1 (hypothetical protein L917_18691 [Phytophthora parasitica])

HSP 1 Score: 563.5 bits (1451), Expect = 6.700e-157
Identity = 282/394 (71.57%), Postives = 332/394 (84.26%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQ +E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   29 SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQCIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 420

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: CCI40477.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 561.6 bits (1446), Expect = 2.500e-156
Identity = 278/395 (70.38%), Postives = 333/395 (84.30%), Query Frame = 0

Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELREL 460
            TFE+LGV   LCEA  ++GW KP+ IQQ+AI   L GRD+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q IALARKPHI++ATPGRLVDHLENTKGF+LR  RFL+LDEADRMLSMDFEEEIN+I+ +MP+   R T+LFSATMTSKVAKLQRASL +P+K+E++ KF+TP  L Q YLFIPAK+KDCYL+Y+LNE AGQ+ L+F STCN  QR+ L+LRNLGF AICLHGQM+QP RLGAL+KFK+  R IL+ TDVASRGLDIP+VD+V+N+DI +HGKDYIHRVGRTAR      +++ VTQYDVE+YQR+E LLG KL  Y  +E+TVL++ ERV EAQRIA  E++EL
Sbjct:   30 TFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSLRTIRFLVLDEADRMLSMDFEEEINQIVQLMPS--ERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSILIFASTCNGTQRVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKSRKILVCTDVASRGLDIPSVDVVMNYDISTHGKDYIHRVGRTARAGRAGIAVSLVTQYDVELYQRIEFLLGKKLDAYPCDEQTVLVMQERVGEAQRIATNEMKEL 422

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: OQS07690.1 (DEAD/DEAH box RNA helicase [Thraustotheca clavata])

HSP 1 Score: 561.6 bits (1446), Expect = 2.500e-156
Identity = 282/400 (70.50%), Postives = 340/400 (85.00%), Query Frame = 0

Query:   59 EEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            EE++  +F ELGV   + E+ TA+GW  P+ IQQ+ +  AL G D+IGLAETGSGKTGAF +P+LQ LL  PQRLFA+VLAPTRELAFQI E FEALGASIGLKC CVVGG+DMM Q +ALA+KPHIV+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MP    RRT+LFSATMTSKVAKLQRASL +PVKVE++ KF+TP TLVQ+YLFIPAKYKDCYLAY+LNE+AGQ+ L+F +TCN  Q++ L+LR+LGF AICLHGQM+QP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VIN+DIP++GKDYIHRVGRTAR      +++ VTQY+VE+YQR+E LLG KL E+K EE TVL++LERV EAQR A  EL+E
Sbjct:   15 EELETKSFLELGVDPTIVESITALGWKAPSKIQQKTLPPALAGHDLIGLAETGSGKTGAFVIPILQDLLQSPQRLFALVLAPTRELAFQISEQFEALGASIGLKCACVVGGIDMMNQQVALAKKPHIVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIVQLMPND--RRTYLFSATMTSKVAKLQRASLKNPVKVEITHKFATPDTLVQKYLFIPAKYKDCYLAYILNEYAGQSVLIFAATCNATQKITLMLRSLGFPAICLHGQMSQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINYDIPTNGKDYIHRVGRTARAGRAGIALSVVTQYEVELYQRIEHLLGKKLIEFKCEESTVLVMLERVGEAQRAATLELKE 412

[Close]

BLAST of NO01G01810 vs. NCBI_GenBank
Match: OQR94208.1 (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 558.5 bits (1438), Expect = 2.200e-155
Identity = 280/400 (70.00%), Postives = 338/400 (84.50%), Query Frame = 0

Query:   59 EEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            EE++  +F ELGV   + E+ TA+GW  P+ IQQ+ +  AL G D+IGLAETGSGKTGAF +P+LQ LL  PQRLFA+VLAPTRELAFQI E FEALGASIGLKC CVVGG+DMM Q +ALA+KPHIV+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MPT   RRT+LFSATMTSKVAKLQRASL +P+KVE++ KF+TP TL Q+YLF+PAK+KDCYLAYVLNEFAGQ+ L+F +TCN  Q++  +LR+LGF AICLHGQM+QP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+V+N+DIP++GKDYIHRVGRTAR      +++ VTQYDVE+YQR+E LLG KL  +K EE TVL+LLERV EAQR A  EL+E
Sbjct:   16 EELETKSFLELGVDPTIVESITALGWKAPSKIQQKTLPPALAGHDLIGLAETGSGKTGAFVIPILQDLLTTPQRLFALVLAPTRELAFQISEQFEALGASIGLKCACVVGGIDMMNQQVALAKKPHIVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIVQLMPTD--RRTYLFSATMTSKVAKLQRASLKNPIKVEITHKFATPDTLAQKYLFVPAKHKDCYLAYVLNEFAGQSILIFAATCNGTQKITHMLRSLGFPAICLHGQMSQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVVNYDIPTNGKDYIHRVGRTARAGRAGIALSVVTQYDVELYQRIEHLLGKKLDAFKCEESTVLVLLERVGEAQRAATIELKE 413

The following BLAST results are available for this feature:

BLAST of NO01G01810 vs. NCBI_GenBank

BLAST of NO01G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008897447.1	7.900e-158	71.83	hypothetical protein PPTG_05608 [Phytophthora para...	[more]
ETO62611.1	7.900e-158	71.83	hypothetical protein F444_19500 [Phytophthora para...	[more]
ETP31833.1	7.900e-158	71.83	hypothetical protein F442_19320 [Phytophthora para...	[more]
POM58612.1	1.000e-157	71.57	DEAD/DEAH box RNA helicase [Phytophthora palmivora...	[more]
CCA26186.1	3.000e-157	70.63	DEAD/DEAH box RNA helicase putative [Albugo laibac...	[more]
XP_009517012.1	3.000e-157	68.07	hypothetical protein PHYSODRAFT_309945 [Phytophtho...	[more]
ETL80855.1	6.700e-157	71.57	hypothetical protein L917_18691 [Phytophthora para...	[more]
CCI40477.1	2.500e-156	70.38	unnamed protein product [Albugo candida]	[more]
OQS07690.1	2.500e-156	70.50	DEAD/DEAH box RNA helicase [Thraustotheca clavata]	[more]
OQR94208.1	2.200e-155	70.00	DEAD/DEAH box RNA helicase [Achlya hypogyna]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL006	nonsL006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G01810.1	NO01G01810.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|523534	gene_161	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100007g2	gene1510	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G01810.1	NO01G01810.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G01810 ID=NO01G01810|Name=NO01G01810|organism=Nannochloropsis oceanica|type=gene|length=1634bp
ACCACAGGTCAAAAGTCAAGGGTCAAAACCAATCACCACCTTGCGCCTCT
CCCGCCACACAAGCTATGGCCCCGATCGAGGCACCCTCCACCTCGACCCT
GGTCGAGAAGATTAAGAAGAAGCTCATGCCCGTCCATGTGAAGGGCGATA
GTAACAAGGAGGCTGCCGCAGCAGCATCTGCACAACCCTCAGTTAGTCAG
AAGAATGACGACGAGATACCCGACCCCGATGAGGAAGGCGAGGAGGTAGA
CGTCGCGACCTTTGAGGAGTTGGGTGTGGTGAAGCCCTTGTGCGAAGCCT
GCACGGCCATTGGCTGGATCAAACCCACGGATATTCAACAACAAGCCATT
CATGCGGCGCTGCAAGGCCGTGACGTGATCGGGCTGGCCGAGACAGGCTC
CGGAAAAACAGGCGCATTCGCCTTGCCCGTGCTCCAGGCCTTGCTAGCCA
AGCCTCAAAGGCTGTTTGCCGTCGTCCTGGCCCCAACACGCGAGCTTGCC
TTCCAAATCCATGAGGTCTTTGAGGCGCTCGGCGCAAGCATTGGTTTGAA
ATGCTGCTGTGTTGTGGGCGGGGTGGACATGATGACGCAAGCCATCGCAT
TGGCCCGCAAACCCCACATCGTCGTCGCTACCCCCGGACGTCTGGTCGAC
CACCTCGAAAACACGAAAGGTTTCAATCTCCGTGAAGCCCGCTTTTTGAT
CCTAGACGAAGCAGATCGCATGCTCTCCATGGACTTTGAAGAGGAAATCA
ACAAAATTCTGACGGTCATGCCCACGGGGAAAGCCCGTCGGACCTTCCTC
TTCAGTGCTACCATGACCAGCAAGGTCGCCAAGCTCCAACGCGCCTCCCT
CACCGACCCAGTAAAGGTAGAAGTATCCTCCAAATTCTCCACCCCCCGCA
CTCTGGTCCAGCAGTACCTGTTTATTCCGGCCAAGTACAAGGACTGCTAC
CTTGCCTACGTTCTGAACGAATTCGCTGGACAAACCACCCTGGTGTTCGT
CAGCACATGCAACAATGCCCAACGCCTCGCCCTTCTTCTGCGCAACCTAG
GGTTTGGCGCCATCTGCCTACACGGGCAAATGACCCAACCCAAACGCCTG
GGTGCCTTGCATAAATTCAAGTCAGGACAGCGATCTATCCTCATTGCTAC
TGACGTTGCGTCACGCGGGCTTGACATCCCAGCTGTGGACCTGGTCATCA
ATTTCGACATCCCCTCGCATGGAAAAGACTACATCCATCGTGTCGGGAGG
ACGGCAAGGGCGGGGAGGGCAGGGAGGTCGATCGCATTTGTCACTCAATA
TGATGTGGAGGTGTACCAAAGGTTGGAGCTCTTGTTGGGCACCAAGTTAC
CCGAGTATAAAGCAGAGGAGGAAACCGTGTTAATTTTATTGGAGAGGGTC
AGCGAAGCGCAACGAATTGCAGTGCGAGAACTGAGGGAGTTGCAATTGGG
CGGGGGGAAGAAGCGGAAGAGAGGGGGAGGGGAGGAGGAGGGGGAGGAGG
CGGAGGGGGAGGAAGGGGGCGGAGCGGAGGGGAAACGTTTTCCAGGGTCA
AAGGGGGGAGTAAGGGGGGGGGGGGGGGGGGGAGGGAGGGGACGGGGAGG
AAGGGGGAGAGGACGGGGCCGAGGGAGGTTTTAA

protein sequence of NO01G01810.1

>NO01G01810.1-protein ID=NO01G01810.1-protein|Name=NO01G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MAPIEAPSTSTLVEKIKKKLMPVHVKGDSNKEAAAAASAQPSVSQKNDDE
IPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQ
GRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHE
VFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENT
KGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATM
TSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVL
NEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHK
FKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAG
RAGRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQR
IAVRELRELQLGGGKKRKRGGGEEEGEEAEGEEGGGAEGKRFPGSKGGVR
GGGGGGGRGRGGRGRGRGRGRF*

Synonyms

Publications