NO01G01810, NO01G01810 (gene) Nannochloropsis oceanica

Overview
NameNO01G01810
Unique NameNO01G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1634
Alignment locationchr1:457243..458876 -

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Properties
Property NameValue
DescriptionDead deah box rna
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:457243..458876 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO01G01810 vs. NCBI_GenBank
Match: EWM29212.1 (dead deah box rna [Nannochloropsis gaditana])

HSP 1 Score: 704.5 bits (1817), Expect = 2.400e-199
Identity = 373/415 (89.88%), Postives = 384/415 (92.53%), Query Frame = 0
Query:   48 DDEIPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRELQLG 463
            D ++     +G E DV TFE LGVVKPLCEAC AIGW KPT IQQQAI AALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLK CCVVGGVDMMTQAIALARKPH+VVATPGRLVDHLENTKGF++REARFL+LDEADRMLSMDFEEEINKIL +MPTGK RRT LFSATMTSKVAKLQRASLTDPVKVE S KF+TPRTLVQQYLFIPAKYKDCYLAY LNE AGQT LVFV+TCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRT  XXXXX SIA VTQYDVEVYQRLE LLGTKLPEYK +EETVLILLERVSEAQRIA RELREL LG
Sbjct:   18 DVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTXXXXXXXXSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLG 432          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_005855808.1 (dead deah box rna, partial [Nannochloropsis gaditana CCMP526] >EKU20555.1 dead deah box rna, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 677.9 bits (1748), Expect = 2.400e-191
Identity = 357/397 (89.92%), Postives = 368/397 (92.70%), Query Frame = 0
Query:   48 DDEIPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLER 445
            D ++     +G E DV TFE LGVVKPLCEAC AIGW KPT IQQQAI AALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLK CCVVGGVDMMTQAIALARKPH+VVATPGRLVDHLENTKGF++REARFL+LDEADRMLSMDFEEEINKIL +MPTGK RRT LFSATMTSKVAKLQRASLTDPVKVE S KF+TPRTLVQQYLFIPAKYKDCYLAY LNE AGQT LVFV+TCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRT  XXXXX SIA VTQYDVEVYQRLE LLGTKLPEYK +EETVLILLER
Sbjct:   18 DVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTXXXXXXXXSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLER 414          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: CBJ32599.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 608.6 bits (1568), Expect = 1.800e-170
Identity = 312/407 (76.66%), Postives = 359/407 (88.21%), Query Frame = 0
Query:   52 PDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            P+ DE   E   A+FE LGV  PLCEA   +GW   T+IQ+QA+  A +G+DVIGLAETGSGKTGAFALP+LQALL  PQRLFAV++APTRELAFQI+EV EALG  IGLK  C+VGG+DM  Q++ALA KPH+V+ATPGRLVDHLENTKGF+LR A++L+LDEADRML MDFEEEINK+L+V+P  + RRTFLFSATMTSKVAKLQRASL +P +VEV++KFSTP+TLVQQYLFIPAK+KDCYLAYVLNEFAGQ+T+VFVSTCNNAQR+ALLLRNLGF A+CLHGQM QPKRLGAL KFKSGQR++LIATDVASRGLDIP+VDLV+N +IPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQR+E L+G KLP Y  +EETVL+L ERV EAQR+A RE+RE
Sbjct:  394 PEADEPPPEDIKASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQALLENPQRLFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLP--RERRTFLFSATMTSKVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRMEALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMRE 798          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_009827724.1 (hypothetical protein H257_04796 [Aphanomyces astaci] >ETV83053.1 hypothetical protein H257_04796 [Aphanomyces astaci])

HSP 1 Score: 574.3 bits (1479), Expect = 3.800e-160
Identity = 293/419 (69.93%), Postives = 349/419 (83.29%), Query Frame = 0
Query:   40 QPSVSQKNDDEIPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +P    K+ DEI    E  E+++  +F ELGV   LCE+  A+GW +P+ IQQ+++ AAL G+D+IGLAETGSGKTGAF +P+LQ LL  PQRLFA+VLAPTRELAFQI E FEALG+SIGLKC CVVGG+DMM Q +ALA+KPH+V+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MP    RRT+LFSATMTSKVAKLQRASL  PVKVE++ KF+TP TL Q+YLFIPAKYKDCYLAYVLNEFAGQ+ L+F STCN  QR+ L+LR+LGF AICLHGQMTQP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VINFDIP++GKDYIHRVGRTAR      +++FVTQYDVE+YQR+E LLG KL  Y  EE TVL++LERV EAQR A  EL+E
Sbjct:   11 EPHEPAKDADEI--VVEADEQIEDKSFLELGVNPALCESIAALGWTRPSKIQQKSLPAALAGKDIIGLAETGSGKTGAFVIPILQDLLLSPQRLFALVLAPTRELAFQISEQFEALGSSIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMP--NERRTYLFSATMTSKVAKLQRASLQSPVKVEITHKFATPETLAQKYLFIPAKYKDCYLAYVLNEFAGQSMLIFASTCNGTQRITLMLRSLGFPAICLHGQMTQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINFDIPTNGKDYIHRVGRTARAGRAGIALSFVTQYDVELYQRIEHLLGKKLDTYACEESTVLVMLERVGEAQRAATIELKE 425          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: GAX94404.1 (DEAD/DEAH box RNA helicase, putative [Pythium insidiosum])

HSP 1 Score: 573.9 bits (1478), Expect = 5.000e-160
Identity = 288/405 (71.11%), Postives = 342/405 (84.44%), Query Frame = 0
Query:   55 DEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELREL 460
            D+EG   D  TFEELGV   +CEA  A+GW KP+ IQQQ I   L+GRD+IGLAETGSGKTGAF +P+LQ LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC C+VGG+DMM Q +ALARKPHIV+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MPT   R T+LFSATMTSKVAKLQRASL +PV VE++ KF+TP TL Q YLFIPAKYKDCYLAYVLNE AGQ+ L+F +TCN  Q++ L+LRNLGF AICLHGQMTQP RLGAL+KFK+  R+IL+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +++FVTQYDVE+YQR+E LLG KL  Y  EE+TVL++LERV+EAQR+A  EL+++
Sbjct:  104 DDEGFSGD-KTFEELGVDPAICEAIAAVGWKKPSKIQQQTIPHGLEGRDIIGLAETGSGKTGAFVIPILQTLLKNPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACIVGGIDMMNQQVALARKPHIVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIVQLMPTD--RNTYLFSATMTSKVAKLQRASLKNPVXVEITHKFATPETLKQHYLFIPAKYKDCYLAYVLNEVAGQSVLIFAATCNGTQKVTLMLRNLGFQAICLHGQMTQPNRLGALNKFKAKSRNILVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAVSFVTQYDVELYQRIEHLLGKKLDAYPCEEDTVLVMLERVNEAQRMATLELKDM 505          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_008861903.1 (hypothetical protein H310_00784 [Aphanomyces invadans] >ETW10492.1 hypothetical protein H310_00784 [Aphanomyces invadans])

HSP 1 Score: 572.8 bits (1475), Expect = 1.100e-159
Identity = 285/399 (71.43%), Postives = 340/399 (85.21%), Query Frame = 0
Query:   60 EVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +++  +F ELGV   LCE+  A+GW +P+ IQQ+++  AL G+D+IGLAETGSGKTGAF +P+LQ LLA PQRLFA+VLAPTRELAFQI E FEALG+SIGLKC CVVGG+DMM Q +ALA+KPH+V+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MP    RRT+LFSATMTSKVAKLQRASL  PVKVE++ KF+TP TL Q+YLFIPAKYKDCYLAYVLNEFAGQ+ L+F STCN  QR+ L+LR+LGF AICLHGQMTQP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VIN+DIP++GKDYIHRVGRTAR      +++FVTQYDVE+YQR+E LLG KL  Y  EE TVL++LERV EAQR A  EL+E
Sbjct:   25 QIEDKSFSELGVNPALCESIAALGWTRPSKIQQKSLPPALAGKDIIGLAETGSGKTGAFVIPILQDLLASPQRLFALVLAPTRELAFQISEQFEALGSSIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMP--NERRTYLFSATMTSKVAKLQRASLKSPVKVEITHKFATPETLAQKYLFIPAKYKDCYLAYVLNEFAGQSMLIFASTCNGTQRMTLMLRSLGFPAICLHGQMTQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINYDIPTNGKDYIHRVGRTARAGRAGIALSFVTQYDVELYQRIEHLLGKKLDAYACEESTVLVMLERVGEAQRAATIELKE 421          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_002907723.1 (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >EEY64287.1 DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 568.9 bits (1465), Expect = 1.600e-158
Identity = 284/395 (71.90%), Postives = 334/395 (84.56%), Query Frame = 0
Query:   64 ATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            A+F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   28 ASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVITERVNEAQRIATIEMKE 420          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: XP_024576064.1 (dead deah box rna [Plasmopara halstedii] >CEG39695.1 dead deah box rna [Plasmopara halstedii])

HSP 1 Score: 568.9 bits (1465), Expect = 1.600e-158
Identity = 283/394 (71.83%), Postives = 336/394 (85.28%), Query Frame = 0
Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F+ELGV   +CEA  A+GW  P+ IQQ+AI   L G+D+IGLAETGSGKTGAF +P+LQ+LL KPQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPHIV+ATPGRLVDHLENTKGF+LR  ++L+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL +PVKVE++ KF+TP TL Q YLFIPAKYKDCYLAY+LNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++LERV+EAQRIA  E++E
Sbjct:   29 SFQELGVDSTICEAIEAVGWTAPSKIQQEAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQKPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHIVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIVQLMPA--ERNTYLFSATMTSKVRKLQRASLKEPVKVEITHKFATPETLKQHYLFIPAKYKDCYLAYLLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLNAYPCEEETVLVMLERVNEAQRIATIEMKE 420          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: OWZ19719.1 (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 568.5 bits (1464), Expect = 2.100e-158
Identity = 284/394 (72.08%), Postives = 333/394 (84.52%), Query Frame = 0
Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            TF ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+ QR++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +++FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   21 TFAELGVDSAICEAIAAVGWSAPSKIQQQAIPHGLAGQDLIGLAETGSGKTGAFVIPILQRLLLNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMP--PERNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKQRNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAVSFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVMSERVNEAQRIATIEMKE 412          
BLAST of NO01G01810 vs. NCBI_GenBank
Match: ETI33821.1 (hypothetical protein F443_19547 [Phytophthora parasitica P1569] >ETM34024.1 hypothetical protein L914_18782 [Phytophthora parasitica])

HSP 1 Score: 567.0 bits (1460), Expect = 6.100e-158
Identity = 283/394 (71.83%), Postives = 334/394 (84.77%), Query Frame = 0
Query:   65 TFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARXXXXXRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRE 459
            +F ELGV   +CEA  A+GW  P+ IQQQAI   L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLKC CVVGG+DMM Q +ALARKPH+V+ATPGRLVDHLENTKGF+LR  +FL+LDEADRMLSMDFEEEIN+I+ +MP    R T+LFSATMTSKV KLQRASL DPVKVE++ KF+TP TL Q+YLFIPAK+KDCYLAYVLNE AGQ+ L+F STCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTAR      +I+FVTQYDVE+YQR+E LLGTKL  Y  EEETVL++ ERV+EAQRIA  E++E
Sbjct:   29 SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLQNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQRYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEMKE 420          
The following BLAST results are available for this feature:
BLAST of NO01G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29212.12.400e-19989.88dead deah box rna [Nannochloropsis gaditana][more]
XP_005855808.12.400e-19189.92dead deah box rna, partial [Nannochloropsis gadita... [more]
CBJ32599.11.800e-17076.66DEAD box helicase [Ectocarpus siliculosus][more]
XP_009827724.13.800e-16069.93hypothetical protein H257_04796 [Aphanomyces astac... [more]
GAX94404.15.000e-16071.11DEAD/DEAH box RNA helicase, putative [Pythium insi... [more]
XP_008861903.11.100e-15971.43hypothetical protein H310_00784 [Aphanomyces invad... [more]
XP_002907723.11.600e-15871.90DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
XP_024576064.11.600e-15871.83dead deah box rna [Plasmopara halstedii] >CEG39695... [more]
OWZ19719.12.100e-15872.08DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
ETI33821.16.100e-15871.83hypothetical protein F443_19547 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01810.1NO01G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523534gene_161Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g2gene1510Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01810.1NO01G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01810 ID=NO01G01810|Name=NO01G01810|organism=Nannochloropsis oceanica|type=gene|length=1634bp
ACCACAGGTCAAAAGTCAAGGGTCAAAACCAATCACCACCTTGCGCCTCT
CCCGCCACACAAGCTATGGCCCCGATCGAGGCACCCTCCACCTCGACCCT
GGTCGAGAAGATTAAGAAGAAGCTCATGCCCGTCCATGTGAAGGGCGATA
GTAACAAGGAGGCTGCCGCAGCAGCATCTGCACAACCCTCAGTTAGTCAG
AAGAATGACGACGAGATACCCGACCCCGATGAGGAAGGCGAGGAGGTAGA
CGTCGCGACCTTTGAGGAGTTGGGTGTGGTGAAGCCCTTGTGCGAAGCCT
GCACGGCCATTGGCTGGATCAAACCCACGGATATTCAACAACAAGCCATT
CATGCGGCGCTGCAAGGCCGTGACGTGATCGGGCTGGCCGAGACAGGCTC
CGGAAAAACAGGCGCATTCGCCTTGCCCGTGCTCCAGGCCTTGCTAGCCA
AGCCTCAAAGGCTGTTTGCCGTCGTCCTGGCCCCAACACGCGAGCTTGCC
TTCCAAATCCATGAGGTCTTTGAGGCGCTCGGCGCAAGCATTGGTTTGAA
ATGCTGCTGTGTTGTGGGCGGGGTGGACATGATGACGCAAGCCATCGCAT
TGGCCCGCAAACCCCACATCGTCGTCGCTACCCCCGGACGTCTGGTCGAC
CACCTCGAAAACACGAAAGGTTTCAATCTCCGTGAAGCCCGCTTTTTGAT
CCTAGACGAAGCAGATCGCATGCTCTCCATGGACTTTGAAGAGGAAATCA
ACAAAATTCTGACGGTCATGCCCACGGGGAAAGCCCGTCGGACCTTCCTC
TTCAGTGCTACCATGACCAGCAAGGTCGCCAAGCTCCAACGCGCCTCCCT
CACCGACCCAGTAAAGGTAGAAGTATCCTCCAAATTCTCCACCCCCCGCA
CTCTGGTCCAGCAGTACCTGTTTATTCCGGCCAAGTACAAGGACTGCTAC
CTTGCCTACGTTCTGAACGAATTCGCTGGACAAACCACCCTGGTGTTCGT
CAGCACATGCAACAATGCCCAACGCCTCGCCCTTCTTCTGCGCAACCTAG
GGTTTGGCGCCATCTGCCTACACGGGCAAATGACCCAACCCAAACGCCTG
GGTGCCTTGCATAAATTCAAGTCAGGACAGCGATCTATCCTCATTGCTAC
TGACGTTGCGTCACGCGGGCTTGACATCCCAGCTGTGGACCTGGTCATCA
ATTTCGACATCCCCTCGCATGGAAAAGACTACATCCATCGTGTCGGGAGG
ACGGCAAGGGCGGGGAGGGCAGGGAGGTCGATCGCATTTGTCACTCAATA
TGATGTGGAGGTGTACCAAAGGTTGGAGCTCTTGTTGGGCACCAAGTTAC
CCGAGTATAAAGCAGAGGAGGAAACCGTGTTAATTTTATTGGAGAGGGTC
AGCGAAGCGCAACGAATTGCAGTGCGAGAACTGAGGGAGTTGCAATTGGG
CGGGGGGAAGAAGCGGAAGAGAGGGGGAGGGGAGGAGGAGGGGGAGGAGG
CGGAGGGGGAGGAAGGGGGCGGAGCGGAGGGGAAACGTTTTCCAGGGTCA
AAGGGGGGAGTAAGGGGGGGGGGGGGGGGGGGAGGGAGGGGACGGGGAGG
AAGGGGGAGAGGACGGGGCCGAGGGAGGTTTTAA
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protein sequence of NO01G01810.1

>NO01G01810.1-protein ID=NO01G01810.1-protein|Name=NO01G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MAPIEAPSTSTLVEKIKKKLMPVHVKGDSNKEAAAAASAQPSVSQKNDDE
IPDPDEEGEEVDVATFEELGVVKPLCEACTAIGWIKPTDIQQQAIHAALQ
GRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHE
VFEALGASIGLKCCCVVGGVDMMTQAIALARKPHIVVATPGRLVDHLENT
KGFNLREARFLILDEADRMLSMDFEEEINKILTVMPTGKARRTFLFSATM
TSKVAKLQRASLTDPVKVEVSSKFSTPRTLVQQYLFIPAKYKDCYLAYVL
NEFAGQTTLVFVSTCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHK
FKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAG
RAGRSIAFVTQYDVEVYQRLELLLGTKLPEYKAEEETVLILLERVSEAQR
IAVRELRELQLGGGKKRKRGGGEEEGEEAEGEEGGGAEGKRFPGSKGGVR
GGGGGGGRGRGGRGRGRGRGRF*
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Synonyms
Publications