NO01G01800, NO01G01800 (gene) Nannochloropsis oceanica

Overview
NameNO01G01800
Unique NameNO01G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr1:455679..456767 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:455679..456767 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032739MRNIP
Homology
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BLAST of NO01G01800 vs. NCBI_GenBank
Match: XP_002674783.1 (predicted protein [Naegleria gruberi] >EFC42039.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 76.3 bits (186), Expect = 2.200e-10
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0 
Query:    1 MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGEARD------QLHQQRSMQVPASPPLYE 85
            MP   + QC+ C  F  NQ TKNRKW C++CG++QSI KV+A ++  K+LR   Q+LN + GE         QL ++   Q+    P+Y+
Sbjct:    1 MPEHAIFQCFNCTAFSINQVTKNRKWKCKLCGSQQSIRKVFANSNQPKDLRPIVQELNMKRGEIEQEVLEARQLEEENEEQIVEKKPIYK 90
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BLAST of NO01G01800 vs. NCBI_GenBank
Match: PRW57031.1 (UPF0544 C5orf45-like protein [Chlorella sorokiniana])

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-9
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    3 TFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGEARDQLHQQRSMQV 77
            T+++VQCY+C  F  +QE + +KWAC++CG KQS+ +V+AR+ SAK+ RL  QQ N   G   ++   +R++Q+
Sbjct:    4 TWLVVQCYQCRAFQVDQEKQAKKWACKLCGEKQSLQRVFARSHSAKDCRLVVQQYNTARGAVEEE-EAERALQM 76
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BLAST of NO01G01800 vs. NCBI_GenBank
Match: ORY40488.1 (hypothetical protein BCR33DRAFT_852798 [Rhizoclosmatium globosum])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:    1 MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGE 64
            MP F +V+C++C  F+  QE K+ KW C +CG+KQS+ KVY  +  A + R A Q+LN + GE
Sbjct:    1 MPNFQVVRCFQCSAFVVQQEKKSNKWQCTLCGSKQSVTKVYFESHVAGDTRAAVQELNMRRGE 63
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BLAST of NO01G01800 vs. NCBI_GenBank
Match: XP_013896966.1 (hypothetical protein MNEG_10015 [Monoraphidium neglectum] >KIY97946.1 hypothetical protein MNEG_10015 [Monoraphidium neglectum])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:    3 TFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGEARD-----QLHQQRSMQVPA 79
            TF  V+C+ C  F    + K+ KW C  CGAKQS+++V+A  D+AK++RL  QQLN   GEA +     Q   QR+ Q  A
Sbjct:    5 TFCAVRCHACSRFCVQLQKKSGKWGCPTCGAKQSVLQVFAVGDAAKDVRLVVQQLNTSQGEAEEAAGLNQKEPQRAEQQAA 85
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BLAST of NO01G01800 vs. NCBI_GenBank
Match: GAQ86720.1 (hypothetical protein KFL_003070080 [Klebsormidium nitens])

HSP 1 Score: 65.1 bits (157), Expect = 5.200e-7
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:    1 MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGEA 65
            M  +++V+C++C  F   Q TK+ KW+C +C AKQS+IKVY  +  A +LR  AQ LN    EA
Sbjct:    1 MVEYIVVRCFQCSTFQVKQVTKSNKWSCSLCAAKQSVIKVYGVSGKASDLRKLAQDLNLGRQEA 64
[Close]
BLAST of NO01G01800 vs. NCBI_GenBank
Match: GAX78562.1 (hypothetical protein CEUSTIGMA_g6002.t1 [Chlamydomonas eustigma])

HSP 1 Score: 64.3 bits (155), Expect = 8.800e-7
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 0 
Query:    1 MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKELRLAAQQLNAQHGEARDQLHQQ 72
            MP F +++C  C  F   Q  K  KWAC  CG KQS+ K+YA +  AK+ RL  Q L+  HGE   +  QQ
Sbjct:    1 MPEFHVIRCCSCLSFQVQQVKKASKWACHTCGLKQSLQKIYAISQKAKDCRLVCQNLSMAHGELEQEAGQQ 71
The following BLAST results are available for this feature:
BLAST of NO01G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
XP_002674783.12.200e-1040.00predicted protein [Naegleria gruberi] >EFC42039.1 ... [more]
PRW57031.13.200e-943.24UPF0544 C5orf45-like protein [Chlorella sorokinian... [more]
ORY40488.11.200e-846.03hypothetical protein BCR33DRAFT_852798 [Rhizoclosm... [more]
XP_013896966.11.400e-743.21hypothetical protein MNEG_10015 [Monoraphidium neg... [more]
GAQ86720.15.200e-745.31hypothetical protein KFL_003070080 [Klebsormidium ... [more]
GAX78562.18.800e-743.66hypothetical protein CEUSTIGMA_g6002.t1 [Chlamydom... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008171NSK008171Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01800.1NO01G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231418gene_160Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01800.1NO01G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01800 ID=NO01G01800|Name=NO01G01800|organism=Nannochloropsis oceanica|type=gene|length=1089bp
ATGCCAACCTTCGTCCTTGTGCAATGCTATCGATGCCACGTCTTCATTCC
CAACCAAGAGACCAAGAACCGCAAATGGGCATGCCGGATGTGTGGGGCCA
AGCAAAGCATTATCAAAGTCTATGCGAGGACCGACAGCGCCAAGGAGCTC
CGTCTAGCCGCACAGCAATTAAATGCACAGCACGGCGAAGCGCGGGATCA
GCTTCATCAGCAACGTTCGATGCAGGTCCCTGCGTCGCCTCCTTTGTACG
AATGCTATCAAGGAGGAGGAGGAGAAGAAGGAGAGGTAGAGGAGGAGCTG
CGCCACCATAACAACTATCATCTTCAGAACCAGCATCAGATGAGCGGGTC
TGCGGACGGATCCGTTTCGCAAGAGGGTAATGCCCATGGTGGTGGGGGTG
GAGGAGGAGAGGTTGGAAGCCGTTGGGGCGCATTTTTAATAGATACACAG
AGAGAAGACGCACAAAGTAGCATAAGCGGTAATGGATTCCATGGCGCGAG
CTTGATGAGCTTGGTGAGTGAGGATATAGAGGAGGAAGATGGACGGTTTG
TGACGGAGTTGCCGGCGGCGAGGGAAAGAGGTAAAATAGGAAGAGGAGGA
AGAGGAGGAGGAGGAGGAAAAAGCGGACGGCACGGGGGGCGACGCAAGCG
AGGAGGAGGCGAAGGAGGAAGCGAAGGAAAAGAAAGAGAGGAAAATTGGG
GTCATGGACGACAAAGACAAGCTCGGAAGCGGGGTGGGGATAGCAACAAC
GATGAGGAAGATGAGGAAGCGATGCGGATCCAAGAGGACAATCGTGGGTA
CCACAAGCAGCACCTGCAGTACCAACAGCACCAGCAGCATGATGGATGGG
GTTGGGAGGCCTCGATGGGGGAAACAAGAGGAGAAGTTGGAAGATATGAG
ACGGGGGGGGAAGTGAGTAAGCGTATGCGGTCTTATGATGCTGTAACGGA
AAGCAACAAGCGGCATGTATCTGCTGTGCAGGGAGGAGAGAGAGGAAGAG
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCCGCAAGTAGCAACAGGGTT
GCGATTAGTAGCAACAGCCGATGGTCCGCTTTCATGTAA
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protein sequence of NO01G01800.1

>NO01G01800.1-protein ID=NO01G01800.1-protein|Name=NO01G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKEL
RLAAQQLNAQHGEARDQLHQQRSMQVPASPPLYECYQGGGGEEGEVEEEL
RHHNNYHLQNQHQMSGSADGSVSQEGNAHGGGGGGGEVGSRWGAFLIDTQ
REDAQSSISGNGFHGASLMSLVSEDIEEEDGRFVTELPAARERGKIGRGG
RGGGGGKSGRHGGRRKRGGGEGGSEGKEREENWGHGRQRQARKRGGDSNN
DEEDEEAMRIQEDNRGYHKQHLQYQQHQQHDGWGWEASMGETRGEVGRYE
TGGEVSKRMRSYDAVTESNKRHVSAVQGGERGRGGGGGGAAAAAASSNRV
AISSNSRWSAFM*
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Synonyms
Publications