NO01G01780, NO01G01780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01780 vs. NCBI_GenBank
Match: EWM29087.1 (trna rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 307.4 bits (786), Expect = 7.100e-80 Identity = 166/222 (74.77%), Postives = 184/222 (82.88%), Query Frame = 0 Query: 23 LSLLLILLLT---TGAAKAFVTPSNPSVAP-ARVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICG 241 +SL+L L L G A S P + P + R MSS DRSVRQPKKTIA+EAALKD+GAPAVILVRPYLDEN+GSCARAMLNFGLTDLRII+PFCDHLTPMARARASGAD +LE AR+F + AV+DLSEVIGTSARQRDMT+TIV+PEEAARLAVG+L +FA+GGAR GYMFGSERNGL NEDLVYA R+LQIPTN AFSSLNLGQAVQICG Sbjct: 9 VSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_012974994.1 (RNA methyltransferase [Azospirillum lipoferum] >BAI73070.1 tRNA/rRNA methyltransferase [Azospirillum sp. B510]) HSP 1 Score: 176.4 bits (446), Expect = 1.900e-40 Identity = 106/249 (42.57%), Postives = 138/249 (55.42%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD ++E ARIF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL+N+DL A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V HG V+ +V Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARIFETTAEAVADLEAVFATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKLGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALV 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_085090169.1 (RNA methyltransferase [Azospirillum oryzae] >SMF82770.1 tRNA/rRNA methyltransferase [Azospirillum oryzae]) HSP 1 Score: 175.3 bits (443), Expect = 4.200e-40 Identity = 104/249 (41.77%), Postives = 139/249 (55.82%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD +++ A+IF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL+N+DL +A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V HG V+ +V Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALV 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_014248706.1 (RNA methyltransferase [Azospirillum lipoferum] >CBS87722.1 putative tRNA/rRNA methyltransferase [Azospirillum lipoferum 4B]) HSP 1 Score: 174.9 bits (442), Expect = 5.500e-40 Identity = 104/249 (41.77%), Postives = 139/249 (55.82%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD +++ A+IF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL+N+DL +A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V HG V+ +V Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGAMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALV 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_045580966.1 (RNA methyltransferase [Azospirillum thiophilum] >KJR65662.1 rRNA methyltransferase [Azospirillum thiophilum] >ALG70671.1 rRNA methyltransferase [Azospirillum thiophilum]) HSP 1 Score: 174.9 bits (442), Expect = 5.500e-40 Identity = 107/254 (42.13%), Postives = 139/254 (54.72%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHEK 337 G PAVILV+P L ENIG+CARAMLN GLTDLR+++P P A A ASGAD +++ ARIF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL N+DL A L+ +P N AFSSLNL QAV + GYE+++A D L+T TR AT E ++R++ LD T R + L++ R ++V LHG V+ + S K Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVSPRDGWPNPKATAAASGADIVIDNARIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHT---------GPTRPATMAERANFFERLEAALDRTGFFTSEAKRPSMVRTLRNAFERMEMTEQEVRTLHGVVAALTSTRRK 254
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_063635268.1 (RNA methyltransferase [Azospirillum humicireducens] >ANC92202.1 RNA methyltransferase [Azospirillum humicireducens]) HSP 1 Score: 174.9 bits (442), Expect = 5.500e-40 Identity = 104/249 (41.77%), Postives = 139/249 (55.82%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD +++ A+IF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL+N+DL +A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V HG V+ +V Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALV 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_098739127.1 (RNA methyltransferase [Azospirillum sp. B2] >PGH53033.1 rRNA methyltransferase [Azospirillum sp. B2]) HSP 1 Score: 174.5 bits (441), Expect = 7.200e-40 Identity = 105/249 (42.17%), Postives = 138/249 (55.42%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD +++ A+IF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL N+DL A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V LHG V+ +V Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADLVIDNAKIFETTAEAVADLESVFATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEASLDRTGFFTSEAKRPSMIRTLRNAFERMEMTEQEVRTLHGVVTALV 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_042695371.1 (RNA methyltransferase [Azospirillum sp. B506]) HSP 1 Score: 173.7 bits (439), Expect = 1.200e-39 Identity = 104/249 (41.77%), Postives = 137/249 (55.02%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDN-LYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVV 332 G PAVILV+P L ENIG+CARAMLN GLTDLR++ P P A A ASGAD +++ ARIF AV+DL V T+ R RDM VTP R+A G + G + G MFG ER GL N+DL A L+ +P N AFSSLNL QAV + GYE+++A D L+T + TR AT E ++R++ LD T R + L++ R ++V HG V+ ++ Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADLVIDNARIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQ---------TRPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALI 249
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_012566192.1 (RNA methyltransferase [Rhodospirillum centenum] >ACI98402.1 RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW]) HSP 1 Score: 173.3 bits (438), Expect = 1.600e-39 Identity = 96/260 (36.92%), Postives = 145/260 (55.77%), Query Frame = 0 Query: 77 EAALKDKGAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDNLYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHEK 337 +AAL +G P VILV P + ENIG+CARAMLN GLT+LR++NP A A ++GA +L+ AR+F A++DL +V T+AR RDM IVTP AAR L + G R G +FG ER GL+N+D+V + ++ +P N FSSLNL QAV + YE+W A + YT+ + AT E+ ++ ++ LD T P + + +++ L R+ ++V HG ++ +V + ++ Sbjct: 14 QAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGATEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAAR----DLHAHVAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQ-AEEFYTHTGQSPP-------ATKEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRTFHGIIAALVGRKKQ 261
BLAST of NO01G01780 vs. NCBI_GenBank
Match: WP_085554964.1 (RNA methyltransferase [Azospirillum lipoferum] >SMH52848.1 tRNA/rRNA methyltransferase [Azospirillum lipoferum]) HSP 1 Score: 172.6 bits (436), Expect = 2.700e-39 Identity = 102/252 (40.48%), Postives = 140/252 (55.56%), Query Frame = 0 Query: 84 GAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHLGDNLYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHE 336 G PA+ILV+P + ENIG+CARAMLN GLTDLR++ P A A ASGAD +++ AR+F AV+DL V T+AR RDM VTP R+A + G R G MFG ER GL+N+DL A L+ +P N AF+SLNLGQAV + GYE+++ GD E L + TR AT E+ ++ ++ LD T P R + L++ L R ++V HG ++ + K + Sbjct: 14 GGPAIILVQPQMGENIGACARAMLNCGLTDLRLVRPRDGWPNEKAIANASGADLVIDNARVFETTAEAVADLEAVFATTARSRDMIQRFVTP----RVAAEEMRDRHNAGHRVGVMFGPERTGLVNDDLTLAQTLITVPLNPAFASLNLGQAVLLVGYEWFQT----GD---LPPERFLHTGQ-TRPATKAELVNFFEHLEGALDRTGFFTSPEKRPSMVRTLRNALERMDMTEQEVRTFHGVIAALTGKRK 253 The following BLAST results are available for this feature:
BLAST of NO01G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01780 ID=NO01G01780|Name=NO01G01780|organism=Nannochloropsis oceanica|type=gene|length=1688bpback to top protein sequence of NO01G01780.1 >NO01G01780.1-protein ID=NO01G01780.1-protein|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bpback to top Synonyms
Publications
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