NO01G01770, NO01G01770 (gene) Nannochloropsis oceanica

Overview
NameNO01G01770
Unique NameNO01G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1719
Alignment locationchr1:449762..451480 -

Link to JBrowse

Properties
Property NameValue
DescriptionLysine--tRNA ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:449762..451480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004824lysine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006430lysyl-tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006195aa-tRNA-synth_II
IPR004365NA-bd_OB_tRNA
IPR004364aa-tRNA-synt_II
IPR018149Lys-tRNA-synth_II_C
Homology
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_073069706.1 (lysine--tRNA ligase [Phormidesmis priestleyi] >PSB18658.1 lysine--tRNA ligase [Phormidesmis priestleyi ULC007])

HSP 1 Score: 599.7 bits (1545), Expect = 9.200e-168
Identity = 305/504 (60.52%), Postives = 385/504 (76.39%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEE--------FTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            ++++  RL K   ++  G   +A  ++ T   A + EK+A L  G E+ + +V++AGRIMARRVFGKLAFFTLQD++G IQLYLDK R++E         F  LK  TD+GDI+G +G+VKRTEKGE+SVY  E+ MLTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA + +GIRR LD +GF+EIETP+L +  GGADARPF T+HN++DM+L LRIATELHLKRL+VGGF++V+ELGRIFRNEG+STRHNPEFTSIE+YQAY+DYHDMM LTE +I+ +A ++L+T  +TYQ   I+   PWRR TMH++V EK   +F       +  ++L++AK  A+ A + +IE C S+  ++   FE+  E  LIQPTFV+D+PVE+SPLAKPHRSKPGL ERFELF+ GRE AN+FSELTDP+DQR R E Q +RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVM+  DAPSI+DVIAFPLL+ E
Sbjct:    3 DDLRATRLEKVEQLKQLGVNPYAYRWQSTHHAAELQEKYADLASG-EEVKIEVAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKTRIQENMGEADPQAFDHLKQLTDAGDIIGAKGTVKRTEKGELSVYVNEYVMLTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRALITAGIRRYLDQQGFIEIETPVLLSEAGGADARPFVTYHNTMDMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSTRHNPEFTSIEVYQAYADYHDMMALTEAIITTVAQEVLETLKITYQGEDIDLTPPWRRVTMHDVVQEKTGLDF-------TQFQTLDEAKVAAKTAGLHDIEKCGSIERLLNEAFEQKVEDTLIQPTFVLDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPLDQRSRLEAQADRKA-AGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMVLTDAPSIRDVIAFPLLKPE 497          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: OUC13345.1 (lysine--tRNA ligase [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 598.6 bits (1542), Expect = 2.100e-167
Identity = 305/503 (60.64%), Postives = 385/503 (76.54%), Query Frame = 0
Query:   77 EIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEE--------EFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +++  R+ K   ++A G   FA  ++ + ++A +  K+A L P  E++  +V+VAGRIMARRVFGKLAFFTLQD++  IQLYL+K R++E         F+ LK+ TD GDI+GV+G+VKRT+KGE+SVY +E+TMLTKSLLPLPDK+HGLTDV  RYRQR  DLIVNP V+E FR RA + + IRR LD +GF+EIETP+L    GGADARPF T+HN+L+M+L LRIATELHLKRLVVGGF++V+ELGRIFRNEG+STRHNPEFTSIE+YQAY+DY+DMMDLTE +I+  A ++L T  +TYQ   I+   PW+R TMH++V E      D AT  D     L+ AK+ ARAA + +I+ C S+G ++   FE+  E  L+QPTF++D+PVE+SPLAKPHRSKPGL ERFELF+ GRE AN+FSELTDP+DQR R EEQ  RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  D+PSI+DVIAFPLL+ E
Sbjct:    5 DLRATRIEKLEQLKALGMNPFAYQWKSSHSMADLQSKYADL-PNGEEQPVEVAVAGRIMARRVFGKLAFFTLQDETANIQLYLEKSRIQEFMGDRDADAFSHLKSLTDIGDIIGVKGTVKRTDKGELSVYVKEYTMLTKSLLPLPDKFHGLTDVATRYRQRYVDLIVNPEVRETFRRRALITASIRRYLDQQGFIEIETPVLMGEAGGADARPFITYHNTLEMELYLRIATELHLKRLVVGGFEKVFELGRIFRNEGVSTRHNPEFTSIEVYQAYADYNDMMDLTEAIITTAAQEVLGTTQITYQGQAIDLTAPWKRITMHDVVKEAT--GVDFATFTD-----LDAAKQAARAAGIHDIDDCPSIGKLLNEAFEQKVETTLMQPTFILDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPLDQRARLEEQAARKA-AGDLEAQGVDEDFLCALEHGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLKPE 498          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_017300299.1 (lysine--tRNA ligase [Nodosilinea nodulosa])

HSP 1 Score: 598.2 bits (1541), Expect = 2.700e-167
Identity = 312/504 (61.90%), Postives = 384/504 (76.19%), Query Frame = 0
Query:   77 EIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRL--------EEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNF-DLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            EI+  RL K   ++  G   FA  + VTA  A +  K+A LE G E  E +VS+AGRI+ARRVFGKLAFFTLQD+SG+IQLYLDK  +        E+ F  LK  TD GDI+GVRG++KRTEKGE+SV  +E+ +LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA + +GIRR L+D+GFLEIETP+LQ+  GGA+ARPF T+HN+L+MDL LRIATELHLKRLVVGGF++V+E+GRIFRNEG+STRHNPEFTS+E YQAY+DYHD MDLTE++++ LA  +L T  +TYQ   I+   PW+R +MH+LV E+   +F  LAT        LE+AK   +  ++P I++C SVG ++   FEE  E+ LIQPTF+IDHPVE+SPL+KPHRSKPG+ ERFELFV GRE AN FSELTDP+DQR+RF+ Q  RKA  G  EA  VDE+FL ALE GMPPT G GIG+DRLVML  D+PSI+DVIAFPLL+ E
Sbjct:   17 EIRAARLQKVEDLKQLGLNPFAYRWTVTAQTADLQAKYADLEAGAE-VEVEVSLAGRILARRVFGKLAFFTLQDESGLIQLYLDKTTIQAAMGAADEKAFEHLKQLTDVGDILGVRGTLKRTEKGELSVKVQEYAVLTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPAVRDTFRKRALITTGIRRYLEDRGFLEIETPVLQSEAGGAEARPFVTYHNTLEMDLYLRIATELHLKRLVVGGFEKVFEIGRIFRNEGVSTRHNPEFTSVEFYQAYADYHDFMDLTEDLVATLAKDVLGTLKITYQGIDIDLTPPWKRISMHDLVKERTGIDFHQLAT--------LEEAKAAVQDLNLPGIDSCDSVGKLLNEVFEEKIESTLIQPTFLIDHPVEISPLSKPHRSKPGVVERFELFVVGRETANGFSELTDPIDQRQRFDLQAARKA-AGDLEATGVDEDFLTALEYGMPPTCGEGIGIDRLVMLLTDSPSIRDVIAFPLLKPE 510          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_068391874.1 (lysine--tRNA ligase [Leptolyngbya sp. NIES-3755] >BAU15468.1 Lysyl-tRNA synthetase [Leptolyngbya sp. NIES-3755])

HSP 1 Score: 597.4 bits (1539), Expect = 4.600e-167
Identity = 300/501 (59.88%), Postives = 380/501 (75.85%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEE-----FTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +E++Q R+ K   ++  G   +A  +  T + A + +K+  L P  E++  +V++AGR+M RR  GKLAFFT+QD++G IQLYL+K R++E      F +L    D+GD +GV+G++KRT+KGE+SVY +E+T+LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA + +GIRR LD++GF+EIETP+L +  GGADARPF T+HN+LDM L LRIATELHLKRL+VGGF++V+ELGRIFRNEGISTRHNPEFT+IELYQAY+DYHDMM+LTE +I+ +A K+L T  + YQ   ++   PWRR TMHE+V EK     D A   D     LE+AKE A+ A + EIE C S+G ++   FE+  E  LIQPTF++D+PVE+SPLAKPHRSKPGL ERFELF+ GRE AN+FSELTDP+DQR R E Q  RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  D+ SI+DVIAFPLL+ E
Sbjct:    3 DELRQTRIEKVDQLKQLGINPYAYRWESTHSAAELQQKFVEL-PSGEEDPTEVAIAGRVMLRRFLGKLAFFTIQDETGTIQLYLEKKRIQENMGETTFKQLDKLCDAGDFIGVKGTIKRTDKGELSVYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRDTFRKRALITAGIRRYLDEQGFIEIETPVLMSEAGGADARPFTTYHNTLDMQLYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIELYQAYADYHDMMNLTEAIITNVAQKVLGTLKINYQGEAVDLTPPWRRVTMHEIVQEKT--GIDFAQFTD-----LEQAKEAAKKAGIHEIEDCPSIGKLLNEAFEQTVETTLIQPTFILDYPVEISPLAKPHRSKPGLVERFELFMVGRETANSFSELTDPLDQRDRLEAQAARKA-AGDLEAHGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSASIRDVIAFPLLKPE 494          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_106286752.1 (lysine--tRNA ligase [Merismopedia glauca] >PSB05207.1 lysine--tRNA ligase [Merismopedia glauca CCAP 1448/3])

HSP 1 Score: 596.7 bits (1537), Expect = 7.800e-167
Identity = 301/502 (59.96%), Postives = 383/502 (76.29%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLE-------EEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLR 570
            E +I+  RL K   ++  G   +A +++ +   A + EK+A L  G E ++ +V+VAGRI+ARRVFGKLAFFTLQD++G IQLYLDK +++       + F  LK  +D+GDI+GV+G++KRTEKGE+SVY  E+ +LTKSLLPLPDKWHGLTD+ KRYRQR  DLIVNP V++ FR RA++ +GIRR L+ KGFLEIETP+LQ+ PGGA+ARPF T+HN+LDM+L LRIATELHLKRL+VGGF++V+ELGRIFRNEG+S+RHNPEFT+IE+YQAY+DY+DMM+LTE +I+ +  ++L T  +TYQ   IN Q PWRRATMH+LV E    +F          +SLE AK  A+ A +  +  C S+GH++   FE+  E+ LIQPTFV+D+PVE+SPLAKPHR K GL ERFE +V GRELAN+FSELTDP+DQR R E Q  RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  DA SI+D IAFPLL+
Sbjct:    3 EEDIRATRLEKVAQIKQLGMNPYAYSWKSSHHTAELQEKYAELAAGSEVDD-EVAVAGRILARRVFGKLAFFTLQDETGTIQLYLDKNKIQQGMEDVPDAFNSLKRLSDAGDILGVKGTIKRTEKGELSVYVSEYAILTKSLLPLPDKWHGLTDIAKRYRQRYVDLIVNPEVRQSFRRRAQIVAGIRRYLESKGFLEIETPVLQSEPGGAEARPFVTYHNTLDMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSSRHNPEFTTIEVYQAYADYYDMMELTETLITTVTQEVLGTLEITYQGEAINLQTPWRRATMHDLVKEYTGVDF-------QQFDSLEAAKTAAQEAGIDGVAECESIGHILNEAFEQKVESHLIQPTFVLDYPVEISPLAKPHREKAGLVERFEWYVMGRELANSFSELTDPIDQRERLELQAARKA-AGDLEANSVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDAASIRDAIAFPLLK 495          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_052050007.1 (lysine--tRNA ligase [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 596.3 bits (1536), Expect = 1.000e-166
Identity = 305/503 (60.64%), Postives = 381/503 (75.75%), Query Frame = 0
Query:   77 EIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRL--------EEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +I+  RL K   ++  G+  FA  + VTA+ A +  K+A LE G E+ + DVS+AGRI+ARRVFGKLAFF+LQD+SG IQLYL+K  +        E  F  LK  TD GDI+GVRG++KRTEKGE+SV  +E+++LTK+LLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA + +GIRR L+D+GFLEIETP+LQ+  GGA+ARPF T+HN+L+MDL LRIATELHLKRLVVGGF+RV+E+GRIFRNEG+STRHNPEFTS+E YQAY+DYH++M LTE++++ LA  +L T  +TYQ   I+   PWRR +MH+LV E    +F           +LE+AK   +   +P +++C SVG ++   FEE  EA LIQPTF+IDHPVE+SPL+KPHRSKPG+ ERFELF+ GRE AN FSELTDP+DQR RFE Q  RKA  G  EA  VDE+FL ALE GMPPT G GIG+DRLVML  D+PSI+DVIAFPLL+ E
Sbjct:   17 DIRAARLQKVEELKQLGQNPFAYRWDVTASTADLQAKYAGLEAG-EEVDVDVSLAGRILARRVFGKLAFFSLQDESGTIQLYLEKATIGAHMGATDENAFEHLKQLTDVGDILGVRGTIKRTEKGELSVKVQEYSLLTKALLPLPDKWHGLTDVAKRYRQRYVDLIVNPTVRDTFRKRALITTGIRRYLEDRGFLEIETPVLQSEAGGAEARPFVTYHNTLEMDLYLRIATELHLKRLVVGGFERVFEIGRIFRNEGVSTRHNPEFTSVEFYQAYADYHELMALTEDLVATLAKDILGTLKITYQGVDIDLTPPWRRVSMHDLVLEHTGLDFHQFA-------TLEEAKAAVKDLGLPGLDSCDSVGKLLNEVFEEKIEATLIQPTFLIDHPVEISPLSKPHRSKPGVVERFELFIAGRETANGFSELTDPIDQRHRFELQAARKA-AGDLEATGVDEDFLTALEHGMPPTCGEGIGIDRLVMLLTDSPSIRDVIAFPLLKPE 510          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_102204801.1 (lysine--tRNA ligase [Fischerella muscicola] >PLZ94043.1 lysine--tRNA ligase [Fischerella muscicola CCMEE 5323])

HSP 1 Score: 595.9 bits (1535), Expect = 1.300e-166
Identity = 306/505 (60.59%), Postives = 380/505 (75.25%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEE--------EFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            E EI+  RL K   +   G   +A  +  T   A + EK+A L  G E+ + DV++AGRIMARRV GKLAFFTLQD++G IQLYL+K R++E         F  LK  TD GDI+G RG++KRTEKGE+SVY +++T+LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA++ +GIRR L+++ FLEIETP+LQ   GGADARPF T+HN+LDM+L LRIATELHLKRL+VGGF++V+ELGRIFRNEGISTRHNPEFT+IE+YQAY+DY+DMM LTE +I+ +  + L T  +TYQ   ++   PWRR TMH+LV E    NF       +S ++LE+AK   + A +  IE C S+G ++   FE+  EA+L+QPTFVID+PVE+SPLAKPHRS+PGL ERFELF+ GRE AN+FSELTDP+DQR+R EEQ  RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  D  SI+D IAFPLL+ E
Sbjct:    3 EEEIRTTRLEKVEQLRQLGMNPYAYRWESTHYAAQLQEKFADLANG-EEVDIDVAIAGRIMARRVMGKLAFFTLQDETGKIQLYLEKNRIQEGMADIDADAFNHLKQLTDVGDILGARGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEERDFLEIETPVLQAEAGGADARPFITYHNTLDMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIEIYQAYADYNDMMALTEGIITTVTQETLGTLQITYQEQAVDLTPPWRRVTMHDLVQEYTGLNF-------NSFQTLEEAKTACKNAGLEGIEDCSSLGKLLNEAFEQKVEANLVQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETANSFSELTDPIDQRQRLEEQAARKA-AGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDCASIRDAIAFPLLKPE 498          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_012411486.1 (lysine--tRNA ligase [Nostoc punctiforme] >B2J384.1 RecName: Full=Lysine--tRNA ligase; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS >ACC83534.1 lysyl-tRNA synthetase [Nostoc punctiforme PCC 73102])

HSP 1 Score: 595.5 bits (1534), Expect = 1.700e-166
Identity = 305/505 (60.40%), Postives = 385/505 (76.24%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEE--------FTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            E +I+  RL K   ++  G   +A  +  T   A + E++A L  G E+ + +V++AGRIMARRVFGKLAFFTLQD++G IQLYLDK R++E         F  LK  TD+GDI+GV+G++KRTEKGE+SVY +++T+LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA++ +GIRR L+ + FLEIETP+LQ+  GGADARPF T HN+L+M+L LRIATELHLKRL+VGGF++V+ELGRIFRNEGISTRHNPEFT+IE+YQAY+DY+DMM LTE +I+ +A ++L T  +TYQ   I+   PWRR TMH+LV E          L  +S ++LE+AK  ++ A +P ++   S+G ++   FEE  EA+LIQPTFVID+PVE+SPLAKPHRS+PGL ERFELF+ GRE  N+FSELTDP+DQR R E Q ERKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  D+ SI+DVIAFPLL+ E
Sbjct:    3 EEDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEQFADLASG-EEVDLEVAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKNRIQESMADIDADAFNHLKQLTDAGDILGVKGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSEAGGADARPFITHHNTLEMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIEVYQAYADYNDMMALTEGIITTVAQEVLGTLQITYQGEPIDLTPPWRRVTMHDLVKE-------FTGLDFNSFQTLEEAKTASKNAGIPGVDEAKSIGKLLNLAFEEKVEANLIQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETGNSFSELTDPIDQRERLEAQAERKA-AGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSASIRDVIAFPLLKPE 498          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_066377856.1 (MULTISPECIES: lysine--tRNA ligase [Anabaena])

HSP 1 Score: 595.5 bits (1534), Expect = 1.700e-166
Identity = 308/505 (60.99%), Postives = 385/505 (76.24%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEE--------FTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            E +I+  RL K   ++  G   +A  +  T   A + EK+A L P  E+ + +V++AGRIMARRVFGKLAFFTLQD++G IQLYL+K R++E         F  LK  TD GDI+GV G+VKRTEKGE+SVY +++T+LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA++ +GIRR L+ + FLEIETP+LQ+  GGADARPF T+HN+L+M+L LRIATELHLKRL+VGGF++V+ELGRIFRNEGISTRHNPEFTSIE+YQAY+DY+DMM LTE +I+ +A ++L T  +TYQ  T++   PWRR TMH+LV E    +F       +S ++LE+AK  ++ A +  IE   S+G ++   FE+  EA+LIQPTFVID+PVE+SPLAKPHRS+P L ERFELF+ GRE AN+FSELTDP+DQR R E Q  RKA  G  EA  VDE+FLAALE GMPPTGGLGIG+DRLVML  DA SI+DVIAFPLL+ E
Sbjct:    3 EEDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADL-PSGEEVDLEVAIAGRIMARRVFGKLAFFTLQDETGTIQLYLEKNRIQENMAEVDADAFNHLKQLTDVGDILGVTGTVKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSEAGGADARPFITYHNTLEMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTSIEIYQAYADYNDMMALTEGIITTVAQEVLGTLQITYQGETVDLTPPWRRVTMHDLVKEATGLDF-------NSFQTLEEAKAASKNAGLTGIEDVPSIGKLLNEAFEQKVEANLIQPTFVIDYPVEISPLAKPHRSQPSLVERFELFIVGRETANSFSELTDPIDQRERLEAQAARKA-AGDLEAQGVDEDFLAALEYGMPPTGGLGIGIDRLVMLLTDAASIRDVIAFPLLKPE 498          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_069074283.1 (lysine--tRNA ligase [Nostoc sp. KVJ20] >ODH00141.1 lysine--tRNA ligase [Nostoc sp. KVJ20])

HSP 1 Score: 595.5 bits (1534), Expect = 1.700e-166
Identity = 304/505 (60.20%), Postives = 383/505 (75.84%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEE--------EFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            E +I+  RL K   ++  G   +A  +  T   A + E++A L  G E+ + +V++AGRIMARRVFGKLAFFTLQD++G IQLYLDK R++E         F  LK  TD+GDI+G +G++KRTEKGE+SVY +++T+LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA++ +GIRR L+ + FLEIETP+LQ+  GGADARPF T+HN+L+M+L LRIATELHLKRL+VGGF++V+ELGR+FRNEGISTRHNPEFT+IE+YQAY+DY+DMM LTE +I+ +A ++L T  +TYQ   IN   PWRR TMH+LV E          L  +S ++LE+AK  ++ A +P I+   S+G ++   FEE  EA+LIQPTFVID+PVE+SPLAKPHRS+PGL ERFELF+ GRE  N+FSELTDP+DQR RFE Q  RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVML  D  SI+D IAFPLL+ E
Sbjct:    3 EEDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEQFADLSNG-EEVDLEVAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKNRIQEGMADIDADAFNHLKQLTDAGDILGAKGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSETGGADARPFVTYHNTLEMELYLRIATELHLKRLIVGGFEKVFELGRVFRNEGISTRHNPEFTTIEVYQAYADYNDMMALTEGIITTVAQEVLGTLEITYQGEPINLTPPWRRVTMHDLVKE-------FTGLDFNSFQTLEEAKTASKNAGIPGIDEAQSIGKLLNLAFEEKVEANLIQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETGNSFSELTDPIDQRERFEAQAARKA-AGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDCASIRDAIAFPLLKPE 498          
The following BLAST results are available for this feature:
BLAST of NO01G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_073069706.19.200e-16860.52lysine--tRNA ligase [Phormidesmis priestleyi] >PSB... [more]
OUC13345.12.100e-16760.64lysine--tRNA ligase [Alkalinema sp. CACIAM 70d][more]
WP_017300299.12.700e-16761.90lysine--tRNA ligase [Nodosilinea nodulosa][more]
WP_068391874.14.600e-16759.88lysine--tRNA ligase [Leptolyngbya sp. NIES-3755] >... [more]
WP_106286752.17.800e-16759.96lysine--tRNA ligase [Merismopedia glauca] >PSB0520... [more]
WP_052050007.11.000e-16660.64lysine--tRNA ligase [Leptolyngbya sp. KIOST-1][more]
WP_102204801.11.300e-16660.59lysine--tRNA ligase [Fischerella muscicola] >PLZ94... [more]
WP_012411486.11.700e-16660.40lysine--tRNA ligase [Nostoc punctiforme] >B2J384.1... [more]
WP_066377856.11.700e-16660.99MULTISPECIES: lysine--tRNA ligase [Anabaena][more]
WP_069074283.11.700e-16660.20lysine--tRNA ligase [Nostoc sp. KVJ20] >ODH00141.1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008177NSK008177Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01770.1NO01G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576391gene_156Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g62gene1514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01770.1NO01G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01770 ID=NO01G01770|Name=NO01G01770|organism=Nannochloropsis oceanica|type=gene|length=1719bp
ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG
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protein sequence of NO01G01770.1

>NO01G01770.1-protein ID=NO01G01770.1-protein|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLLRPALRTAAVTATAYPRASLTRTLLVRMQSGGDGADATAPPKKPKQQQ
KQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATT
YRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQD
DSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAR
EWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMF
SGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATE
LHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMM
DLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNF
DLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADL
IQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPV
DQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLV
MLFGDAPSIKDVIAFPLLRKED*
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Synonyms
Publications