NO01G01770, NO01G01770 (gene) Nannochloropsis oceanica

Overview
NameNO01G01770
Unique NameNO01G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1719
Alignment locationchr1:449762..451480 -

Link to JBrowse

Properties
Property NameValue
DescriptionLysine--tRNA ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:449762..451480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004824lysine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006430lysyl-tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006195aa-tRNA-synth_II
IPR004365NA-bd_OB_tRNA
IPR004364aa-tRNA-synt_II
IPR018149Lys-tRNA-synth_II_C
Homology
BLAST of NO01G01770 vs. NCBI_GenBank
Match: EWM29104.1 (lysyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 887.1 bits (2291), Expect = 2.900e-254
Identity = 443/505 (87.72%), Postives = 468/505 (92.67%), Query Frame = 0
Query:   68 GAALTAKENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKED 573
            GAALTAKENE+K DR  KARAMEAEGR AFA TY VTA+VA IN+KWAALE G EDE ADV+VAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRL EEFTKLKA+TDSGDIVGVRGSVKRTEKGEISVY REW+MLTK+LLPLPDKWHGLTDVNKRYRQRE DLIVNP VKE FRLRAKMFSG+RRMLD++GFLEIETPILQ HPGGADARPFKTFHNSLDMDLT+RIATELHLKRLVVGGF+RVYE+GRIFRNEGISTRHNPEFTS+ELYQAY+DY+DMMDLTEE+I GLA  LL TE L YQN TI+ QRPWRR TMHELVAEKLPG FDL+TL D+S ESLEKAKE+ARAA VP++ TC SVGHVVQACFEELCEADLIQPTFV DHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQR+RFE QVERKA L LEEAA VDEEFLAALERGMPPTGGLGIGLDRLVMLF DAPSIKDVIAFPLL+KED
Sbjct:  119 GAALTAKENELKVDRWNKARAMEAEGRPAFAATYPVTASVAHINKKWAALEAGAEDESADVAVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLGEEFTKLKAYTDSGDIVGVRGSVKRTEKGEISVYVREWSMLTKALLPLPDKWHGLTDVNKRYRQREVDLIVNPQVKETFRLRAKMFSGLRRMLDERGFLEIETPILQVHPGGADARPFKTFHNSLDMDLTMRIATELHLKRLVVGGFERVYEVGRIFRNEGISTRHNPEFTSVELYQAYADYYDMMDLTEELIHGLAKSLLNTEDLVYQNQTIHLQRPWRRTTMHELVAEKLPGQFDLSTLADNSVESLEKAKEVARAAGVPDVGTCQSVGHVVQACFEELCEADLIQPTFVTDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRKRFEAQVERKAALNLEEAATVDEEFLAALERGMPPTGGLGIGLDRLVMLFSDAPSIKDVIAFPLLKKED 623          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: XP_002288696.1 (lysyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >EED94132.1 lysyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 659.4 bits (1700), Expect = 9.800e-186
Identity = 325/504 (64.48%), Postives = 405/504 (80.36%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKW-AALEPGVEDE--EADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEE----EFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPG-NFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            NE+++ RL KA +M   G   +A  Y+   T + + +++   LEPG EDE   A+++VAGRIMARRVFGKLAF+TLQD++GVIQL  DK RL E     F  LKAWTDSGDI+G +G+++RT+KGE+++YA EWTMLTKS LPLPDK+HGLTD++KRYR R  DLIVNP V++ F  RAK+ S +RR LD KGFLEIETP+L T PGGA+A+PF+T+HN++DMDLTLRIATELHLKRL++GGF RVYELGRIFRNEGISTRHNPEFTS+ELYQAY+DYHDMMDLTEE++ G+A ++  +  + Y   TI+ +RPWRR TMH++V E++P  +FDL     S P +L+ AK  A AA VP++  C +VG+V+ ACFEELCE  LIQPTFVID+PVEVSPL+KPHR+KPG+ ERFELF  GRE+AN+FSELTDPVDQR RFE Q  +KA  G EEA +VDEEFL+ALE+GMPPTGGLGIG+DRLVML  D+PSI+DVIAFPLL+ +
Sbjct:    4 NELRESRLSKAASMRESGVEPYAYVYKPNRTASQLMKEYEGKLEPGEEDECDNAEIAVAGRIMARRVFGKLAFYTLQDETGVIQLQFDKKRLGERDADSFKNLKAWTDSGDIIGAKGTIRRTDKGELTLYATEWTMLTKSALPLPDKYHGLTDISKRYRNRHLDLIVNPSVRDTFYKRAKITSSLRRQLDAKGFLEIETPVLHTQPGGAEAKPFETYHNTMDMDLTLRIATELHLKRLIIGGFPRVYELGRIFRNEGISTRHNPEFTSVELYQAYADYHDMMDLTEELVCGMANEVSDSLIMPYGEYTISLERPWRRVTMHDIVKEEIPDFDFDL-----SDPSTLDAAKAAATAAGVPDVGKCSTVGYVLNACFEELCEPKLIQPTFVIDYPVEVSPLSKPHRNKPGMVERFELFATGREMANSFSELTDPVDQRERFEAQAAKKA-AGDEEACDVDEEFLSALEQGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLKPD 501          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: KOO24733.1 (lysyl-tRNA synthetase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 633.3 bits (1632), Expect = 7.500e-178
Identity = 317/496 (63.91%), Postives = 384/496 (77.42%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +E+   RL K + M  +G   +A +Y  T     +   +A L+ G E+  ADV+V GRI+ RR+FGKLAFFT+QD SG +QLYL+K RL E F  L + TD+GDIVG RGSVKRT+KGE+SVYAREWTMLTK++ PLPDKW GLTDVNKRYRQR  D+IVNP V++ F  RA++ S IRR +D++GFLEIETP LQ+ PGGA+A+PF+TFHN+L M LTLRIATEL+LKRL+VGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAY+DY DMMDL E +I+G A ++     + YQ TT++   PWRR TM +LV E +P  FD A L  +  + L +A+E A AA VP +  C +VG V+  CF+ELCE +LIQPTFV ++P E+SPLAKPHRSKPG+TERFELFV GRELANAFSELTDPVDQR+RFE Q  +KA  G EEA  VDE+FL ALE GMPP GG+GIG+DRL+ML  D+ SIKDVIAFPLLR E
Sbjct:  137 DELMVRRLAKVQQMRDDGVEPYAYSYTATHLAMKLAADFATLQNGEEEAAADVAVTGRILTRRIFGKLAFFTIQDASGTLQLYLEKKRLGEGFESLLSLTDAGDIVGARGSVKRTDKGELSVYAREWTMLTKAMRPLPDKWAGLTDVNKRYRQRYLDMIVNPSVRQTFATRARITSFIRRHMDERGFLEIETPCLQSEPGGAEAKPFETFHNALGMPLTLRIATELYLKRLIVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYADYTDMMDLAEALIAGAAKQVTGGTVVQYQGTTVDLTPPWRRVTMSDLVREAMPNGFDFAALTGAEGD-LARAREAAAAAGVPNVNECQTVGKVLALCFDELCEGNLIQPTFVTEYPTEISPLAKPHRSKPGVTERFELFVVGRELANAFSELTDPVDQRQRFEAQAAKKA-AGDEEACGVDEDFLNALEHGMPPCGGMGIGIDRLIMLLTDSASIKDVIAFPLLRPE 630          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: XP_002176874.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51337.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 632.9 bits (1631), Expect = 9.800e-178
Identity = 314/484 (64.88%), Postives = 383/484 (79.13%), Query Frame = 0
Query:   89 MEAEGRTAFATTYRVTATVASINEKWA-ALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            M   G   F  T+  T T A +N+ +   LE G EDE A+VSVAGRIM RRVFGKLAFFT+QD+ G+IQL  DKGRL + F  LK WTD  DI+GVRG+++RT+KGE++V+A EW MLTKS+LPLPDK+HGL DV KRYR R  D+I NP V+E FR RA + S +RRMLDDKGFLEIETP L T  GGA+A+PF+T+HNS+DM LTLRIATELHLKRL+VGGFDRVYE+GRIFRNEGISTRHNPEFTS+ELYQAY+DY DMM+LTEE++  +A ++  + ++ Y    ++ +RPWRR TMH++V E++P +FD + L    PESL  AK  A AA VP ++   ++G+V+ ACFEELCE  LIQPTFVID+PV+VSPLAK HR+KPGLTERFELF  GRE ANAFSELTDP+DQR RFE Q  +KA  G EEA +VDE+FL ALE+GMPPTGGLGIG+DRLVML  ++PSI+DVIAFPLLR +
Sbjct:    1 MREVGVDPFEYTFATTHTSADLNKLYEHKLENGEEDESANVSVAGRIMTRRVFGKLAFFTMQDEMGMIQLQFDKGRLGDTFKNLKDWTDGSDIIGVRGTIRRTDKGELTVFATEWKMLTKSILPLPDKYHGLQDVTKRYRSRHLDMISNPGVRETFRKRALITSKLRRMLDDKGFLEIETPTLHTQSGGAEAKPFETYHNSMDMQLTLRIATELHLKRLIVGGFDRVYEVGRIFRNEGISTRHNPEFTSVELYQAYADYDDMMNLTEELVCTIAEEVCGSLSIPYGEHMVSLERPWRRVTMHDIVKEEMP-DFDFSALDSQLPESLNTAKAAAIAAGVPNVQGLNTIGYVLNACFEELCEPKLIQPTFVIDYPVDVSPLAKRHRNKPGLTERFELFAVGREHANAFSELTDPIDQRERFEAQAAKKA-AGDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFPLLRPD 482          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: CBJ27015.1 (Lysyl-tRNA Synthetase [Ectocarpus siliculosus])

HSP 1 Score: 625.2 bits (1611), Expect = 2.100e-175
Identity = 312/501 (62.28%), Postives = 389/501 (77.64%), Query Frame = 0
Query:   77 EIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQN-----TTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKED 573
            E++  R+ KA  + A G   +A ++ VT + + + ++W  LE G EDEEA+VSVAGRIMARRVFGKLAFF +QD  G  QLY+DKGRL +EF  LK WTD+GDIVG +G+VKRT+KGE+SVY + W ML+KS+LPLPDK+HGL D  KRYRQR  D++VNP V+++FR+RAK+ S IRR LDD  FLEIETP+LQ+  GGA A+PF T HN LDM LTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTS+E+YQAY+DYHDMM+LTE +++G A+++L T  ++          ++ + PWRR TM++LV EK+  +F+   + D +  +L  A+E A  A V +     + G+++  CFEELCEADLIQPT V+DHP+EVSPLAKPHR+KPG TERFE+FV GRE+ANAFSELTDPVDQR RFE Q  +KA  G EEA +VD++FL ALERGMPPT GLGIG+DRL+ML   A SI+DVIAFPLLR E+
Sbjct:  198 ELRAVRIGKAEEIRAAGGNPYAYSWDVTHSSSELQKQWEGLEAGTEDEEAEVSVAGRIMARRVFGKLAFFNMQDSEGSFQLYIDKGRLGDEFKDLKTWTDAGDIVGAKGTVKRTDKGELSVYVKSWAMLSKSVLPLPDKFHGLKDTEKRYRQRHVDMMVNPAVRDVFRMRAKVTSFIRRSLDDDDFLEIETPVLQSIAGGAAAKPFATHHNVLDMPLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSVEVYQAYADYHDMMELTERLVAGAASEVLGTTAVSGGEEEGAPPDVDLKAPWRRVTMNDLVREKIGLDFEALDMSDPA-AALATARETALKAGVHKAAGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKA-AGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLLAGATSIRDVIAFPLLRAEN 696          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: GAX15537.1 (lysyl-tRNA synthetase, class II [Fistulifera solaris])

HSP 1 Score: 623.2 bits (1606), Expect = 7.800e-175
Identity = 307/498 (61.65%), Postives = 393/498 (78.92%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWA-ALEPGVEDEE-ADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +E++Q RL K +AM   G   F  T+ V+ T + +   +   LEPG ED     ++ AGRI+ RRVFGKLAFFT+QD++G++QL LD+ RL + F  LK WTD GDI+GV G+++RT+KGE++++   W MLTK+LLPLPDK+HGL DV KRYRQR  DLIVN +VK+ FR RA++ S IRR LDD+GFLE++TP+L + PGGA+A+PF+T+HN+LD++LT+RIATELHLKRL++GGF++VYE+GRIFRNEGISTRHNPEFTSIELYQAY+DYHDMMDLTEE++  LA K+  + T+ Y    I+F+RPWRR TMH++V E++   FD A L++    SL KA+  A AA VP++ +  +VG ++ ACFEELCE + IQPTFVID+PVEVSPLAKPHR+K GLTERFELF  GRE AN+FSELTDPVDQR RFE Q  +KA  G EEA +VDE+FL ALE+GMPPTGGLGIG+DRLVML  ++ SI+DVIAFPLL+ E
Sbjct:  118 SELRQIRLQKVQAMRDAGINPFEYTFDVSHTASRLTALYQDKLEPGEEDSSGVTIATAGRILTRRVFGKLAFFTIQDETGILQLQLDQNRLADNFQTLKDWTDGGDIIGVTGTMRRTDKGELTLWCNSWQMLTKALLPLPDKFHGLQDVTKRYRQRHVDLIVNSNVKDTFRKRAQISSQIRRFLDDRGFLEMDTPVLNSVPGGAEAKPFETYHNALDLELTMRIATELHLKRLIIGGFEKVYEMGRIFRNEGISTRHNPEFTSIELYQAYADYHDMMDLTEELVCELALKVCGSLTVPYGEHQISFERPWRRVTMHDIVKERM--KFDFAELQEFDEASLAKARAAAAAAGVPDVASLPTVGQILNACFEELCEPECIQPTFVIDYPVEVSPLAKPHRTKAGLTERFELFAVGREHANSFSELTDPVDQRIRFEAQAAKKA-AGDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLLTNSASIRDVIAFPLLKPE 612          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: OEU16742.1 (Lysyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 610.1 bits (1572), Expect = 6.800e-171
Identity = 299/469 (63.75%), Postives = 371/469 (79.10%), Query Frame = 0
Query:   75 ENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWA-ALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGL 543
            E+EIK +RL K  +M       F  T+  + + A +   +   LEPG EDEE+DV+VAGRIM RRVFGKLAFFTLQD+SG+IQL  DK RL + F  +K WTD GDI+GVRG+V+RT+KGE+++YA EW MLTK++LPLPDK+HGL DVNKRYRQR  D+IVNP V++ FR RAK+ S +RR+LDD GFLEIETP++ +  GGA+A+PF+T+HNSLDMDLTLRIATELHLKRL++GGF+RVYELGRIFRNEG+STRHNPEFTSIELYQAY+DY DMM+LTE ++  +A ++     + Y +  ++  +PWRR TMH++V E++P +FD A L    PESL+KAK  A +A VP ++  +SVG V+  CFEELCE+ LIQPTFVID+P EVSPLAKPHRSKPGL ERFELF  GRE AN+FSELTDPVDQR+RFE Q  +KA  G +EA +VDEEFL ALE+GMPPTGGL
Sbjct:    3 ESEIKSNRLAKVESMRDVNVEPFEYTFDASTSAAQLAADYTDKLEPGEEDEESDVAVAGRIMTRRVFGKLAFFTLQDESGIIQLQFDKNRLGDNFKGIKDWTDGGDIIGVRGTVRRTDKGELTIYANEWKMLTKAILPLPDKFHGLQDVNKRYRQRHVDMIVNPEVRDTFRKRAKITSMMRRLLDDTGFLEIETPVMHSQSGGAEAKPFETYHNSLDMDLTLRIATELHLKRLIIGGFERVYELGRIFRNEGLSTRHNPEFTSIELYQAYADYDDMMELTENLVCTIADEVCGGLEIPYGDHAVSLAKPWRRVTMHDVVKEEIP-DFDFAALDLDDPESLQKAKTAAASAGVPGVDNLMSVGEVLNTCFEELCESKLIQPTFVIDYPTEVSPLAKPHRSKPGLVERFELFAVGREHANSFSELTDPVDQRKRFEAQAAKKA-AGDDEACDVDEEFLQALEQGMPPTGGL 469          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_068818981.1 (lysine--tRNA ligase [Phormidesmis priestleyi])

HSP 1 Score: 605.1 bits (1559), Expect = 2.200e-169
Identity = 305/504 (60.52%), Postives = 386/504 (76.59%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLE--------EEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            ++++  RL K   ++  G   +A  ++ T   A + EK+A L  G E+ E +V++AGRIMARRVFGKLAFFTLQD++G IQLYLDK R++        + F  LK  TD+GDI+G  G++KRTEKGE+SVY   + MLTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V++ FR RA + +GIRR LD +GF+EIETP+L +  GGADARPF T+HN++DM+L LRIATELHLKRL+VGGF++V+ELGRIFRNEGISTRHNPEFT+IE+YQAY+DY+DMM LTE +++ +A ++L+T  + YQ   IN   PWRR TMHE+V EK   +F       S  +SL++AK  A+AA + +IE C+S+G+++   FE+  E  LIQPTFV+D+P+E+SPLAKPHRSKPGL ERFELF+ GRE AN+FSELTDP+DQR R E Q +RKA  G  EA  VDE+FL ALE GMPPTGGLGIG+DRLVM+  DAPSI+DVIAFPLL+ E
Sbjct:    3 DDLRATRLEKVEQLKQLGVNPYAYKWQSTHHAAELQEKYADLASG-EEVEVEVAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKTRIQANMGDADPQAFDHLKQLTDAGDIIGANGTIKRTEKGELSVYVNHYVMLTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRALITAGIRRYLDQQGFIEIETPVLLSEAGGADARPFTTYHNTMDMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIEVYQAYADYYDMMALTEAIVTTVAQEVLETLKIIYQGEAINLTPPWRRVTMHEIVHEKTGVDF-------SQFQSLDEAKVAAKAAGLHDIEKCVSIGNLLNEAFEQKVEDTLIQPTFVLDYPIEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPLDQRARLEAQADRKA-AGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMVLTDAPSIRDVIAFPLLKPE 497          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_036005522.1 (lysine--tRNA ligase [[Leptolyngbya] sp. JSC-1])

HSP 1 Score: 601.3 bits (1549), Expect = 3.200e-168
Identity = 310/503 (61.63%), Postives = 377/503 (74.95%), Query Frame = 0
Query:   76 NEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEE-------FTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            ++++  RL KA  +  +G T +A  + V+   A +  K+A L P  E+ E DVSVAGR+MARRVFGKLAFFTLQD++G IQLYLDK  +E         F +LK  TD GDI+G RG++KRTEKGE+SVY R + +LTKSLLPLPDKWHGLTDV KRYRQR  DLIVNP V+  FR RA + + IRR  D++GFLEIETP+LQT  GGADARPF T HN+L+MDL LRIATELHLKRLVVGGF+RVYE+GRIFRNEGISTRHNPEFTSIE+YQAY DYHDMM   EE+I+ +A  +L T  + YQ+ TI+   PWRR TMHE V E+   +F   T       SL +AK+ A+AA + EIE C S+G ++   FE+  EA LIQPTF+ D+PVE+SPLAKPHRSKPGL ERFELF+ GRE AN FSELTDP+DQR+RFE Q  RKA  G  EA ++DE+F+ ALE G+PPT G+G+G+DRLVML  D  SI+DVIAFPLL+ E
Sbjct:    4 DDLRATRLEKANQLRQQGLTPYAYRWEVSHHTADLQAKYADL-PAGEEVEVDVSVAGRVMARRVFGKLAFFTLQDETGPIQLYLDKKTIEASMSDDVAAFERLKQLTDVGDILGARGTIKRTEKGELSVYVRYFEILTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRHTFRQRALITAAIRRFFDERGFLEIETPVLQTEAGGADARPFITHHNTLEMDLYLRIATELHLKRLVVGGFERVYEMGRIFRNEGISTRHNPEFTSIEVYQAYGDYHDMMTTVEELITTVAQTVLGTLQVNYQDQTIDLSPPWRRITMHEAVQEQTGIDFGQFT-------SLAEAKQAAKAAGLKEIEDCDSIGRLLNEAFEQTVEATLIQPTFITDYPVEISPLAKPHRSKPGLVERFELFIVGRETANGFSELTDPIDQRQRFEAQAARKA-AGDLEAHDIDEDFVTALEYGLPPTVGMGMGIDRLVMLLCDCASIRDVIAFPLLKPE 497          
BLAST of NO01G01770 vs. NCBI_GenBank
Match: WP_106881553.1 (lysine--tRNA ligase [filamentous cyanobacterium CCP5] >PSN18502.1 lysine--tRNA ligase [filamentous cyanobacterium CCP5])

HSP 1 Score: 600.9 bits (1548), Expect = 4.100e-168
Identity = 311/507 (61.34%), Postives = 384/507 (75.74%), Query Frame = 0
Query:   73 AKENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLE--------EEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKE 572
            +  +EI+  R+ K   ++  G   FA  + VT   A++ EK+A L PG E+ + +VS+AGRI+ARRVFGKLAFFTLQD++GVIQLYLDK  ++        + F  LK  TD+GDI+GV G++KRT+KGE+SV  + +++LTKSL PLPDKWHGLTDV KRYRQR  DLIVNP V+E FR RA + +GIRR L+D+GFLEIETP+LQT  GGA+ARPF T+HN+LDM L LRIATELHLKRLVVGGF++V+E+GRIFRNEGISTRHNPEFTS+E YQAY+DYHD MDLTE++I+ LA  +L T  +TYQ  TI+   PWRR TMH+LV E+     D   + D     +E A+  A++  V  ++ C SVG V+   FE+  EA+LIQPTF+IDHPVE+SPL+KPHRS+PG+ ERFELFV GRE AN FSELTDP+DQR+RFE Q  RKA  G  EA  VDE+FL ALE GMPPT G GIG+DRLVMLF DA SI+DVIAFPLLR E
Sbjct:   15 SNRDEIRAARVQKIEELQQLGMNPFAYRWEVTHRAAALQEKFADLSPG-EEADFEVSLAGRILARRVFGKLAFFTLQDETGVIQLYLDKKNIQAAMGESDPQAFNHLKQLTDTGDILGVTGTLKRTDKGELSVKVQRYSLLTKSLRPLPDKWHGLTDVEKRYRQRYVDLIVNPTVREAFRKRALITTGIRRYLEDRGFLEIETPVLQTEAGGAEARPFITYHNTLDMQLYLRIATELHLKRLVVGGFEKVFEIGRIFRNEGISTRHNPEFTSVEFYQAYADYHDFMDLTEDMIATLAKDVLGTLQITYQGETIDLTPPWRRVTMHDLVQEET--GLDFRAMAD-----VEAARAAAQSVGVKGLDKCDSVGRVLNEVFEQKIEANLIQPTFLIDHPVEISPLSKPHRSQPGVVERFELFVAGRETANGFSELTDPLDQRQRFEAQAARKA-AGDLEAQGVDEDFLTALEHGMPPTCGEGIGIDRLVMLFTDAASIRDVIAFPLLRPE 512          
The following BLAST results are available for this feature:
BLAST of NO01G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29104.12.900e-25487.72lysyl-trna synthetase [Nannochloropsis gaditana][more]
XP_002288696.19.800e-18664.48lysyl-trna synthetase [Thalassiosira pseudonana CC... [more]
KOO24733.17.500e-17863.91lysyl-tRNA synthetase [Chrysochromulina sp. CCMP29... [more]
XP_002176874.19.800e-17864.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ27015.12.100e-17562.28Lysyl-tRNA Synthetase [Ectocarpus siliculosus][more]
GAX15537.17.800e-17561.65lysyl-tRNA synthetase, class II [Fistulifera solar... [more]
OEU16742.16.800e-17163.75Lysyl-tRNA synthetase [Fragilariopsis cylindrus CC... [more]
WP_068818981.12.200e-16960.52lysine--tRNA ligase [Phormidesmis priestleyi][more]
WP_036005522.13.200e-16861.63lysine--tRNA ligase [[Leptolyngbya] sp. JSC-1][more]
WP_106881553.14.100e-16861.34lysine--tRNA ligase [filamentous cyanobacterium CC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008177NSK008177Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01770.1NO01G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576391gene_156Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g62gene1514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01770.1NO01G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01770 ID=NO01G01770|Name=NO01G01770|organism=Nannochloropsis oceanica|type=gene|length=1719bp
ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG
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protein sequence of NO01G01770.1

>NO01G01770.1-protein ID=NO01G01770.1-protein|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLLRPALRTAAVTATAYPRASLTRTLLVRMQSGGDGADATAPPKKPKQQQ
KQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATT
YRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQD
DSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAR
EWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMF
SGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATE
LHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMM
DLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNF
DLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADL
IQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPV
DQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLV
MLFGDAPSIKDVIAFPLLRKED*
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Synonyms
Publications