NO01G01720, NO01G01720 (gene) Nannochloropsis oceanica

Overview
NameNO01G01720
Unique NameNO01G01720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr1:433698..435935 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:433698..435935 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01720 vs. NCBI_GenBank
Match: EWM29097.1 (hypothetical protein Naga_100024g57 [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 4.700e-79
Identity = 175/338 (51.78%), Postives = 222/338 (65.68%), Query Frame = 0 
Query:    1 MTRQEYVPIKAICEELTSYGFSYKFGGSSPIIQPWKLSEGKAKKVGLLLEGEKAIRKFWEEHVRPKLSDEFYKRRNVDCILWVDEARKILGFEGPEYKDRFAKVRRFNQIHAAKTTAPDNVVGAPEVLTKGAVTSTTAVHGGSPPSGVESDSGGVPRSGAGPKKRKNSNCSSSTSASGLRSYGIDED--PQKKTSEKKRRVPESDDGLIHYTDLLRKYPAENTFSNFSNAAGSLSECLP-TMTYNHQLHTWASXXXXXXXXXXXNNIRNAPWIHVKEQAELFESLYARVSTLSDSELRQASDLLRRGNPQMIGLVKAYVGKEADEASKKQFRRVLMTL 336
            MT QEY+P+K ICEELTSYGFSYKFGGSSPI+QPWKL+E KAKK+GLLLEGE+AIR+FWEE VRPKL D+FYKRRNVD  +WVDEARK+LGF+GPEYKDRFA  RR +Q      T P     A         T  T  H     + V +    + R G GP++   SN +  +     R    D D   + +  +KKR +P+ ++  IHY +LLRK  +E   ++    +GS S+ LP T   +H+L   +S             IRNAPW+  KEQA+LFESLYARV+ LSD ELR+ASDLL +G+PQMIGLVKAY+GKEA++A   QF+R+L +L
Sbjct:   68 MTYQEYMPMKTICEELTSYGFSYKFGGSSPILQPWKLTESKAKKLGLLLEGERAIRRFWEEQVRPKLPDDFYKRRNVDDYMWVDEARKLLGFDGPEYKDRFATARRRDQ---GARTKPMRAGSAKNGAGMAEDTGGTRAH-----TSVSAKKAAL-REGRGPQEYVTSNSTKRSGTDDSRGGSRDSDNGQEVENIKKKRTLPKVEE-KIHYKELLRKTLSERAGASTGKESGSRSDGLPGTKQGSHRLQ--SSIFTSASPHRLQKRIRNAPWMGAKEQADLFESLYARVAILSDEELRRASDLLCQGSPQMIGLVKAYLGKEANDACIVQFKRILRSL 393
The following BLAST results are available for this feature:
BLAST of NO01G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29097.14.700e-7951.78hypothetical protein Naga_100024g57 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008183NSK008183Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01720.1NO01G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576368gene_149Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g57gene1519Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01720.1NO01G01720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01720 ID=NO01G01720|Name=NO01G01720|organism=Nannochloropsis oceanica|type=gene|length=2238bp
AGTGCATCTTTGTGTGTAAGGTCGTTGCGTGGAGGAAGGGGGGAGGGACA
TGAGCATGAGTCACACGGAACGCGTGTGCTATGGCGTGATTTGTTCGTCG
TTGGGATGCGGCATAGTCAGCTCCCCTTTTCCATTCACTGTGCGCCAGCG
GACCCATGCTGGTGGCCGTGCAAAGAAAGGAAGAAAGTGTGCCACGGAAT
GCAGGTACAAAGGTGCCCGTCTTGGCTGCGTGCGAGCATAGACAGAGCGT
CGTCGGCGAGGACAGTTGTTTCCTTGTAGTTGTAGTCCCACCACGCCTGC
GGATGCCTTTTAGTACTCAACACCAAACCATCCACCACAACAGGCTATCG
ACTGGCTGGCATTGCTGGTGCCGAGTTAGCCACCCTGCTATAGCGGGGCG
GCTCAGTCTCCCAAGGCCAACAACACCAACACACGAACACAGTCTCCTAT
TAGCCACAAACCTGTTTCCACTTTCAATCGCACTTCCAACAAAAAGCAGA
AATGACCCGACAAGAGgtaaatcgccgcgagcttgagggatattctttgg
tgcttctagtcggcgtctatcgtccgcgatcggtgatatggacgtgaatt
ttctgtctccaacccagccagtgttacaaggctaggcaatcgtcgcggtt
tgtaatcggaatttacatcacaacaatgtttgaagtctgacctgcgcatt
ttctccactagtaagagaagcgctgcagtctcagatggttgacactctgt
ctttaattcctacccataccgtatcacacagTATGTGCCAATCAAGGCCA
TTTGCGAGGAACTGACGAGTTATGGATTCTCATACAAATTTGGCGGCTCG
AGTCCGATAATACAGCCCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGT
GGGACTCCTGTTAGAAGGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGC
ACGTCCGTCCGAAACTGTCCGACGAGTTTTACAAgtacgtttcaccttta
tcgattgctctcgctcagtaaatgaatagaagaaattttcaatccttaat
atgggataacacccctttcccactttctcatcccccaaccgcttgcgcgt
aacgcgctcacacagGCGCCGCAACGTCGACTGTATCTTGTGGGTGGATG
AGGCACGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCGATTT
GCGAAAGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAGCTCC
GGACAATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTAACTT
CGACGACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATCGGAT
TCAGGAGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGAATAG
CAACTGCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGCATTG
ACGAGGATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCCAGAA
TCGGACGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACCCAGC
AGAAAACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCGGAGT
GTCTCCCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTCCGCG
TCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACGCCCC
ATGGATCCACGTCAAGgcaagtgattcgaaaaaatacttatagatagttg
aaagcacttatcactttatatcaacaaaaagggctcagaatcaatttctc
cttttgatcttcccagtcctcttcggcattttctgctcactcaccttcgt
atgtcctctttgaccattaacagGAACAAGCGGAACTCTTCGAATCTCTC
TACGCGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGA
TTTGCTTCGACGTGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACG
TGGGCAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTA
ATGACACTTTTGGGATAAAATTGAAGCTGAATGAATGAAAAAGAAAGGAG
AAAAAGTAAAAAAAATGACGTTTGAGTGTTGTCCGGGAAAATATTTTTTC
ACTAATGAAAAAGATAAAATCAAACCACATACAGAAACTGTAAATAATAA
ATGGAAAGAAATACAGCGCAAACAAAATACGTGTTGAC
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protein sequence of NO01G01720.1

>NO01G01720.1-protein ID=NO01G01720.1-protein|Name=NO01G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MTRQEYVPIKAICEELTSYGFSYKFGGSSPIIQPWKLSEGKAKKVGLLLE
GEKAIRKFWEEHVRPKLSDEFYKRRNVDCILWVDEARKILGFEGPEYKDR
FAKVRRFNQIHAAKTTAPDNVVGAPEVLTKGAVTSTTAVHGGSPPSGVES
DSGGVPRSGAGPKKRKNSNCSSSTSASGLRSYGIDEDPQKKTSEKKRRVP
ESDDGLIHYTDLLRKYPAENTFSNFSNAAGSLSECLPTMTYNHQLHTWAS
ASSSSSSSSKPNNIRNAPWIHVKEQAELFESLYARVSTLSDSELRQASDL
LRRGNPQMIGLVKAYVGKEADEASKKQFRRVLMTLLG*
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Synonyms
Publications