NO01G01700, NO01G01700 (gene) Nannochloropsis oceanica

Overview
NameNO01G01700
Unique NameNO01G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr1:429307..431137 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:429307..431137 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
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BLAST of NO01G01700 vs. NCBI_GenBank
Match: EWM29066.1 (hypothetical protein Naga_100024g55 [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 6.500e-118
Identity = 262/539 (48.61%), Postives = 339/539 (62.89%), Query Frame = 0 
Query:   14 CPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRSAQEVDPEVRRFWRDAISHYLA-QQQSFVFAGEEIKLVYTRRGVLHALCLPRILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWALRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVA-MKTFRVHVGLCHAAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGACSFRQVCRLAAATXXXXXXXXXXXXXXXXXXXXXXKKASRQDCEVLAYMMVQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAEREVDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIHYSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQELISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERE-------DKQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPS 544
            CPVCGA+ G     C +LKDW  E+KMLY FEAVK     V+PEVRRFW DAI HYLA +++SFVF GEEIKL YTRR VL  LCLPRIL++ D   ET  L+S+ P      AP  A L  T+  L E     + W +RTL++ PV+  W Y IGHDG++D+D E+ E  ++ +A ++  RVHVGLC AA +LV AYF  R D+ERTVSL+E  D EG G+  G         ++ G CSF  VCR AA++                      +  SR D EVLA +MV+  +AV EG+YLKIL   G    +T  D+ VL+FR+RVNK++R+L  +E  M ++K RA  LH +GLSAQA VE  R+KKL + VEKLRGA+VN++SI++SIEG   D+++FAGLRGGN ALKQQ+ AA+  GL  V DVE+ALREAQELI E++E+G  LS P+     R G   + KEE  ELL+ELEAL + E E       +K   E  +   + E  +SYD PDISHL  + G + E V R+ S
Sbjct:   12 CPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGD-EGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASS---------SPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLM---NREGPTEDIKEE--ELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVG-KTETVARSSS 534
The following BLAST results are available for this feature:
BLAST of NO01G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29066.16.500e-11848.61hypothetical protein Naga_100024g55 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008185NSK008185Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01700.1NO01G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668241gene_147Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g55gene1521Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01700.1NO01G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01700 ID=NO01G01700|Name=NO01G01700|organism=Nannochloropsis oceanica|type=gene|length=1831bp
CAGGCACATTTACAGACGCAATTATCTGCGTGCTTGCCTCGCCGTGGAAG
GAAGAAGGAGTGGTTGTGTGGAAAGCATCCGCCCATGCCAGCCGTTATGA
ACGCTGCGACCGACGTCTCCTGCTGCCCCGTATGTGGCGCAAAACAAGGT
GGTACGGATGCTGCTTGCCCGGTCTTGAAGGACTGGGTCATGGAAGCAAA
GATGCTATACATCTTTGAGGCTGTCAAGAGGTCCGCACAGGAAGTTGACC
CCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTCCCACTATCTGGCCCAG
CAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCAAGCTGGTCTACACCCG
ACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGGATACTGGCGGATTCGG
ACGCACGCTCAGAGACTCGTACATTGGCCAGCATGATCCCCACCTGTAAA
GGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGCATACCGCCCGCCGCCT
AGCAGAAACAAGCATCGGGGTGACTCGATGGGCGTTGCGAACACTCTTGA
TGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCATTGGACATGACGGAGAA
TATGATGAAGATATCGAGGTGGAGGAGAAAAGCGAGGACGACGTTGCTAT
GAAGACGTTCCGCGTGCATGTCGGGCTTTGTCACGCAGCTGGCAAACTTG
TTGCAGCCTATTTTGAGCAGCGGATTGACGTTGAACGGACTGTGAGCCTG
ACGGAGGACTATGACGAGGAAGGACAGGGTGAGGGGCATGGTGCGAACCG
AACTGCAATGCCAACGACGAGCAGCGGTGGTGCGTGTTCGTTCCGGCAGG
TGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTCATCATCGTTCTCCTCT
ACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTATCCTCAAAAAAGCCTC
TCGGCAAGACTGTGAGGTGCTCGCCTACATGATGGTGCAACAAGGGATGG
CCGTCCTGGAAGGGAATTACCTCAAGATCCTTTGTGGCAGTGGAAAAGGA
AAAGTTGTCACAGATACCGATAGAAAGGTACTCGAATTTCGCTTACGCGT
CAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAAGTAGACATGGGCCAGG
CAAAGCAGCGGGCGATGGCATTGCACCGGCAAGGGTTGAGCGCACAGGCC
GCGGTGGAACTATGGCGGTACAAAAAACTAACTTCCTTAGTAGAGAAGCT
GAGGGGGGCCGTGGTTAACCTGGTAAGTATTCATTATTCAATTGAGGGAG
TGACAACGGATATAGAGATTTTTGCCGGACTGCGCGGGGGAAATGAGGCT
CTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGGGTTTGAAGGACGTCAT
GGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAGCTGATTAGTGAGACAA
ATGAGATTGGGATGGCTTTATCTGGACCTGTGGCCGCGGGAGAAGCACGG
GTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACGCGGAGTTGTTGCGGGA
GTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGATAAGCAAATATTGGAGG
AGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGATATCGTATGATTTCCCG
GATATTAGCCATCTTCCTCATGTTGAGGGAACAGAAATGGAGCCGGTCTG
TAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTTGACTAGCAAGTTTCAC
TTTCAGGGTGAGATTTTGGGATAGATTAGAGCATTAGATGGGAAAAACAA
ATAGCAAAAGCACGCACCCATGTATCCAATA
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protein sequence of NO01G01700.1

>NO01G01700.1-protein ID=NO01G01700.1-protein|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MPAVMNAATDVSCCPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRS
AQEVDPEVRRFWRDAISHYLAQQQSFVFAGEEIKLVYTRRGVLHALCLPR
ILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWA
LRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVAMKTFRVHVGLCH
AAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGA
CSFRQVCRLAAATFASSSSFSSTSVSSSAVAASILKKASRQDCEVLAYMM
VQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAERE
VDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIH
YSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQE
LISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERED
KQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPSTGKKKLL
D*
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Synonyms
Publications