NO01G01640, NO01G01640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01640 vs. NCBI_GenBank
Match: EWM29051.1 (dna-directed rna polymerases ii 24 kda [Nannochloropsis gaditana]) HSP 1 Score: 392.5 bits (1007), Expect = 8.100e-106 Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = 0 Query: 1 MRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208 MRL+RIRKTVLKML KRGYNVLEQTLEATF SFSDDVARISLENNNCTAREACTINVGKIDDA+DVVFVFFSDDEKGLGTKPIQKYVERLLQAGS+CGII+YRNNITAIAKKLLQ GAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV Sbjct: 11 MRLFRIRKTVLKMLTKRGYNVLEQTLEATFSSFSDDVARISLENNNCTAREACTINVGKIDDAADVVFVFFSDDEKGLGTKPIQKYVERLLQAGSSCGIIIYRNNITAIAKKLLQPGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 217
BLAST of NO01G01640 vs. NCBI_GenBank
Match: CBJ48715.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 197.2 bits (500), Expect = 5.000e-47 Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQ-AGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208 ++YRIR+T +KML KRGYNVL++ + T ++F + + E N R T+ V K+DD D +FVFF DDEK +G KPI+ Y E++L+ IIV + IT A+ +Q A V++E FK++EL++DITEHTLVPEH VL+ +QKAE+L RYKLK++QLP+IQS DP+AR++G+Q+G V KI R SETAGRY+TYR+C+ Sbjct: 14 KIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAF---LQQYGPEPN----RHDLTLLVEKVDDPMDQIFVFFPDDEK-VGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212
BLAST of NO01G01640 vs. NCBI_GenBank
Match: XP_008610822.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Saprolegnia diclina VS20] >XP_012199112.1 hypothetical protein SPRG_05117 [Saprolegnia parasitica CBS 223.65] >EQC36060.1 DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Saprolegnia diclina VS20] >KDO29927.1 hypothetical protein SPRG_05117 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 193.0 bits (489), Expect = 9.400e-46 Identity = 110/203 (54.19%), Postives = 138/203 (67.98%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205 RLYR+RKTV+KMLA RGY V + L+ T F+ EN RE TI V K+DD SD +FVF+ DD K +G KPI+ Y R+ I++ ++ IT AK+ L A P K++ FKE+ELLVDITEHTLVP H VLT ++K +L RYKLK+SQLP++Q +DPIARYYG+ RG VVKIIR SETAGRY+TYR Sbjct: 12 RLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFG----EN---PTREMMTILVEKVDDPSDNLFVFYPDDAK-VGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205
BLAST of NO01G01640 vs. NCBI_GenBank
Match: OQS06564.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Thraustotheca clavata]) HSP 1 Score: 192.2 bits (487), Expect = 1.600e-45 Identity = 109/203 (53.69%), Postives = 138/203 (67.98%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205 RLYR+RKTV+KML RGY V ++ L T F EN +RE TI V K+DD SD +FVF+ DD K +G KPI+ Y R+ I++ ++ IT AK+ L A P K++ FKE+ELLVDITEHTLVP H VLT ++K +L RYKLK+SQLP++Q++DPIARYYG+ RG VVKIIR SETAGRY+TYR Sbjct: 12 RLYRVRKTVVKMLHNRGYIVSDEELRRTTDEFVQQFG----EN---PSRENLTILVEKVDDPSDNLFVFYPDDAK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PKFKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQASDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORY51713.1 (RPB5 subunit of DNA-directed RNA polymerase [Neocallimastix californiae]) HSP 1 Score: 191.8 bits (486), Expect = 2.100e-45 Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208 +LYR KT+ +M+ RGY V + L+ T Q F + A+ + RE+ T V K DD +D + VFF DE +G KPI+KY ER+ GIIVY+ N+T A+K++ A P +E+F +SELLV+IT H+LVP+HVVLT D+K +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+ Sbjct: 10 KLYRAYKTIHEMVHDRGYLVSQNELDMTLQQFQEKYAQTGV-----VERESLTFLVQKKDDPADSLLVFFPSDET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNDEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208
BLAST of NO01G01640 vs. NCBI_GenBank
Match: GAY01619.1 (Hypothetical protein PINS_009447 [Pythium insidiosum]) HSP 1 Score: 191.4 bits (485), Expect = 2.700e-45 Identity = 110/203 (54.19%), Postives = 136/203 (67.00%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205 RLYR+RKTV+KML RGY V E L T +SF ++ + RE TI V KIDD SD +FVFF +D K +G KPI+ Y R+ I+V + IT A++ L A P K+E FKE+ELLVDITEHTLVP H VL D+KA +L RY++K+SQLP++Q DPIARYYG+ RG VVKIIR SETAGRY+TYR Sbjct: 688 RLYRVRKTVVKMLHNRGYIVSENELVMTPESF-------QMQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTK-VGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMA-PRYKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 881
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORY81129.1 (RPB5 subunit of DNA-directed RNA polymerase [Neocallimastix californiae]) HSP 1 Score: 191.0 bits (484), Expect = 3.600e-45 Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208 +LYR KT+ +M+ RGY V + L+ T Q F + A+ + RE+ T V K DD +D + VFF DE +G KPI+KY ER+ GIIVY+ N+T A+K++ A P +E+F +SELLV+IT H+LVP+HVVLT D+K +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+ Sbjct: 10 KLYRAYKTIHEMVHDRGYLVSQNELDMTLQQFQEKYAQTGV-----VERESLTFLVQKKDDPADSLLVFFPADET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNDEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORX75465.1 (RPB5 subunit of DNA-directed RNA polymerase [Anaeromyces robustus]) HSP 1 Score: 189.1 bits (479), Expect = 1.400e-44 Identity = 105/206 (50.97%), Postives = 140/206 (67.96%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208 +LYR KT+ +M+ RGY V + L+ T Q F D A + RE+ T V K DD +D + VFF DE +G KPI+KY ER+ GIIVY+ N+T A+K++ A P +E+F +SELLV+IT H+LVP+HVVLT ++K +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+ Sbjct: 10 KLYRAYKTIHEMVHDRGYLVSQTELDMTLQQFQDKYA-----PSGVVERESLTFLVQKKDDPADSLLVFFPADET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNEEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208
BLAST of NO01G01640 vs. NCBI_GenBank
Match: XP_008873597.1 (hypothetical protein H310_09332 [Aphanomyces invadans] >ETV98036.1 hypothetical protein H310_09332 [Aphanomyces invadans]) HSP 1 Score: 188.3 bits (477), Expect = 2.300e-44 Identity = 105/203 (51.72%), Postives = 139/203 (68.47%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205 +L+R+RKTV+KML RGY V E+ L T + F+ EN R+ TI V K+DD SD +FVF+ +D K +G KPI+ Y R+ I++ ++ IT AK+ L A P K++ FKE+ELLVDITEHTLVP H VLT ++K +L RYKLK++QLP++Q++DPIARYYG+ RG VVKIIR SETAGRY+TYR Sbjct: 9 KLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFTAQFG----EN---PTRDTMTILVEKVDDPSDNLFVFYPEDPK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202
BLAST of NO01G01640 vs. NCBI_GenBank
Match: OQR92297.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Achlya hypogyna]) HSP 1 Score: 188.0 bits (476), Expect = 3.000e-44 Identity = 107/203 (52.71%), Postives = 137/203 (67.49%), Query Frame = 0 Query: 2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205 RLYR+RKTV+KML RGY V + L+ T F+ EN RE TI V K+DD SD +FVF+ +D K +G KPI+ Y R+ I++ ++ IT AK+ L A P K++ FKE+ELLVDITEHTLVP H VL+ ++K +L RYKLK+SQLP++Q +DPIARYYG+ RG VVKIIR SETAGRY+TYR Sbjct: 12 RLYRVRKTVVKMLHNRGYIVSDDELKRTTDGFAAQFG----EN---PTREMMTILVEKVDDPSDNLFVFYPEDAK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKETELLVDITEHTLVPVHKVLSREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205 The following BLAST results are available for this feature:
BLAST of NO01G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01640 ID=NO01G01640|Name=NO01G01640|organism=Nannochloropsis oceanica|type=gene|length=1100bpback to top protein sequence of NO01G01640.1 >NO01G01640.1-protein ID=NO01G01640.1-protein|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bpback to top Synonyms
Publications
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