NO01G01610, NO01G01610 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM29088.1 (wsc domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 779.6 bits (2012), Expect = 9.200e-222 Identity = 394/796 (49.50%), Postives = 508/796 (63.82%), Query Frame = 0 Query: 24 RKPFAQWPIGGRDEQVEGCFNNFDAQISILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYRNNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWLHNRSSLSGK----HTSTSPVSHKCLQLARDGTWINKSCQGDEDNKEEEERASCFACKKICASPSPSLRPLAAEEWAIELVTPTSSVYHWCTDCHDTFLKSIHSSQYLCADDQHRPYMKWERDITWCLWTLVVDPESGAVVLLTPHGTALTYDKETSALVCRLLQWSYKTPPPPDTVTQL-FSEAGVKAPQGTVVLNPSSLPFVIVERYLRVTIHSINRRPGASGFASSGSRNGPLRECSMAVCDTSSRSESFGCRP---------VSGPGAGYTPLVFNQVALRVFDQSSYVSARQPLPNGRLTCLNQNPTETVNCVFAYGESFILVRRFRAYWGVQLFDTLSKLFEATQVDDLTVQYQGARRTGRDRTGDASIGEVVKPGMGNHIYYNREVAAGGVRGARGRAGGGTTDGGVTRAREFGRPNRVQLLNRNSKLVQNALTGAFDTFYQIINLKLLVEVRNWQLGLNVVPQTALTIQYWLTTHYLKYRWRAVFQPQGGFVLTLFGRQIGGDDGCIFSLGDLSAAQDLLFSMYGTYEEPIDAGVTMTDIEHIELSYLGLPVQPWTD 806 R P A+ IGG+DEQVEGCFNNF A+ ++ L + SNLRCQA+CTE+GYALAATGGG+ S CWCGN++PG H V +C+RPCS D+K+C+LFTCCG++NG+L+T+SWNGE NP+K LL RL+ +YR+++ FR+ I YL R+S +L + E PLYLSVGNGCPVGWC A+PSTYDEA KCQ EG +LV + S +N FV LY GC GWLH S G + +SH LQL DG+WI + + R +CFAC+K C P P+LRP A+EW IE+ SS Y WCTDC D++LK++++ YLC DDQ+ Y+ + + +WC+WT+ +DP++GA+ L+ H LTY E + L CR L Y + L F + + AP G + NPSSLP I E YLR+ +HS+NRR ++ A G L+ECSMAV D S +S++F CRP V G A +PLVF Q AL V+DQSSYV+AR+PLPNGR+TCLNQNPTETV+CV AYG + IL+RRFR +G+ LFDT++ LF+ + ++Q +T R GN V AG + R RPN V L+ KLVQNALTG+F+TFYQ + K LV+VR WQLG+NV P TALTIQ W+TT YLKYRWRAVFQP+GGF LTLFGR++ G G FSLGDL + D+L+SMYG+YEEP++ +TMTD EHIELSYLGLP+ PW+D Sbjct: 46 RPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDXXXXXXXXADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISH--LQLKPDGSWIAL------PGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRG-----LQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPE--------------GN-------VVAG-------------------KERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSD 788
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM26828.1 (macrophage mannose receptor 1 [Nannochloropsis gaditana]) HSP 1 Score: 155.2 bits (391), Expect = 8.500e-34 Identity = 82/229 (35.81%), Postives = 124/229 (54.15%), Query Frame = 0 Query: 38 QVEGCFNNFDAQISIL---LRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYR-NNSAFRRRIE-------EIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWL 256 + EGCFN+F + I E L+N+RC+A C G++++AT ++ +C CGNN+P H V + QC++PCSPDR C CCG+ G +TVS+ E + QLLR LT DYR N F++ +E + +A + A+ + + GNGCP GW +++ CYK+ + + A A CQ+ G +L + ++ ENDFV+ L G GWL Sbjct: 87 KTEGCFNDFFTLLQISYGGAGQESLNNIRCRARCAASGFSMSAT---SAQSCHCGNNYPSVFHRVRDTQCSQPCSPDRTVCEESGCCGDAKGKYFTVSFAREIDVTLQLLRTLTFDYRVQNKLFQQHVEGRLASAASLMVASFDGVEAMSSTASTNAQVDGV-IGFGNGCPTGWAVHKRACYKRVSGRLTDFSTAQATCQNMGGNLPMLKTVDENDFVRSLLNGQAGWL 311
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM26794.1 (low affinity immunoglobulin epsilon fc receptor [Nannochloropsis gaditana]) HSP 1 Score: 141.7 bits (356), Expect = 9.700e-30 Identity = 77/225 (34.22%), Postives = 124/225 (55.11%), Query Frame = 0 Query: 38 QVEGCFNNFDAQISILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYR-NNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNG------CPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWL 256 + EGCF+ FD +S ++ N CQA C Q ++++AT + +TC+CGNN+P + V + C+ PCSPD+ C+++ CCG+++GT +TV++ G QLLR+LT+DYR +N R I+ + AS LQ T + +S G G CP + ++G CY + + + +Y +A +CQ +GA L I S END++ + GW+ Sbjct: 145 KTEGCFSKFDFLLSQTYPAVEIDNRVCQAFCASQRFSVSAT---SLNTCYCGNNYPSAFFKVKDDICDNPCSPDKTYCFVYACCGSRDGTYFTVAFAG------QLLRQLTYDYRMSNPRLRDHIKTLM-----GASAPLQVMSSNGLSTGVVMSGGAGIGLQGSCPDHYSEFKGACYSRVYGKMMSYIQAKERCQEDGASLAVITSREENDYLTRMLFQRPGWI 355 The following BLAST results are available for this feature:
BLAST of NO01G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01610 ID=NO01G01610|Name=NO01G01610|organism=Nannochloropsis oceanica|type=gene|length=2631bpback to top protein sequence of NO01G01610.1 >NO01G01610.1-protein ID=NO01G01610.1-protein|Name=NO01G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bpback to top Synonyms
Publications
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