NO01G01610, NO01G01610 (gene) Nannochloropsis oceanica

Overview
NameNO01G01610
Unique NameNO01G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2631
Alignment locationchr1:405615..408245 -

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Properties
Property NameValue
DescriptionWsc domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:405615..408245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016187C-type_lectin_fold
IPR002889WSC_carb-bd
Homology
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM29088.1 (wsc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 779.6 bits (2012), Expect = 9.200e-222
Identity = 394/796 (49.50%), Postives = 508/796 (63.82%), Query Frame = 0
Query:   24 RKPFAQWPIGGRDEQVEGCFNNFDAQISILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYRNNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWLHNRSSLSGK----HTSTSPVSHKCLQLARDGTWINKSCQGDEDNKEEEERASCFACKKICASPSPSLRPLAAEEWAIELVTPTSSVYHWCTDCHDTFLKSIHSSQYLCADDQHRPYMKWERDITWCLWTLVVDPESGAVVLLTPHGTALTYDKETSALVCRLLQWSYKTPPPPDTVTQL-FSEAGVKAPQGTVVLNPSSLPFVIVERYLRVTIHSINRRPGASGFASSGSRNGPLRECSMAVCDTSSRSESFGCRP---------VSGPGAGYTPLVFNQVALRVFDQSSYVSARQPLPNGRLTCLNQNPTETVNCVFAYGESFILVRRFRAYWGVQLFDTLSKLFEATQVDDLTVQYQGARRTGRDRTGDASIGEVVKPGMGNHIYYNREVAAGGVRGARGRAGGGTTDGGVTRAREFGRPNRVQLLNRNSKLVQNALTGAFDTFYQIINLKLLVEVRNWQLGLNVVPQTALTIQYWLTTHYLKYRWRAVFQPQGGFVLTLFGRQIGGDDGCIFSLGDLSAAQDLLFSMYGTYEEPIDAGVTMTDIEHIELSYLGLPVQPWTD 806
            R P A+  IGG+DEQVEGCFNNF A+ ++ L   + SNLRCQA+CTE+GYALAATGGG+ S CWCGN++PG  H V   +C+RPCS D+K+C+LFTCCG++NG+L+T+SWNGE NP+K LL RL+ +YR+++ FR+ I   YL    R+S +L   +   E  PLYLSVGNGCPVGWC           A+PSTYDEA  KCQ EG +LV + S  +N FV  LY GC GWLH  S   G       +   +SH  LQL  DG+WI           + + R +CFAC+K C  P P+LRP  A+EW IE+    SS Y WCTDC D++LK++++  YLC DDQ+  Y+  + + +WC+WT+ +DP++GA+  L+ H   LTY  E + L CR L   Y       +   L F  + + AP G  + NPSSLP  I E YLR+ +HS+NRR  ++  A  G     L+ECSMAV D S +S++F CRP         V G  A  +PLVF Q AL V+DQSSYV+AR+PLPNGR+TCLNQNPTETV+CV AYG + IL+RRFR  +G+ LFDT++ LF+ +       ++Q   +T R                GN       V AG                   + R   RPN V  L+   KLVQNALTG+F+TFYQ +  K LV+VR WQLG+NV P TALTIQ W+TT YLKYRWRAVFQP+GGF LTLFGR++ G  G  FSLGDL  + D+L+SMYG+YEEP++  +TMTD EHIELSYLGLP+ PW+D
Sbjct:   46 RPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDXXXXXXXXADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISH--LQLKPDGSWIAL------PGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRG-----LQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPE--------------GN-------VVAG-------------------KERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSD 788          
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM26828.1 (macrophage mannose receptor 1 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 8.500e-34
Identity = 82/229 (35.81%), Postives = 124/229 (54.15%), Query Frame = 0
Query:   38 QVEGCFNNFDAQISIL---LRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYR-NNSAFRRRIE-------EIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWL 256
            + EGCFN+F   + I       E L+N+RC+A C   G++++AT   ++ +C CGNN+P   H V + QC++PCSPDR  C    CCG+  G  +TVS+  E +   QLLR LT DYR  N  F++ +E        + +A  +            A+   + +  GNGCP GW +++  CYK+     + +  A A CQ+ G +L  + ++ ENDFV+ L  G  GWL
Sbjct:   87 KTEGCFNDFFTLLQISYGGAGQESLNNIRCRARCAASGFSMSAT---SAQSCHCGNNYPSVFHRVRDTQCSQPCSPDRTVCEESGCCGDAKGKYFTVSFAREIDVTLQLLRTLTFDYRVQNKLFQQHVEGRLASAASLMVASFDGVEAMSSTASTNAQVDGV-IGFGNGCPTGWAVHKRACYKRVSGRLTDFSTAQATCQNMGGNLPMLKTVDENDFVRSLLNGQAGWL 311          
BLAST of NO01G01610 vs. NCBI_GenBank
Match: EWM26794.1 (low affinity immunoglobulin epsilon fc receptor [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 9.700e-30
Identity = 77/225 (34.22%), Postives = 124/225 (55.11%), Query Frame = 0
Query:   38 QVEGCFNNFDAQISILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVANGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHDYR-NNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNG------CPVGWCMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGGCQGWL 256
            + EGCF+ FD  +S      ++ N  CQA C  Q ++++AT   + +TC+CGNN+P +   V +  C+ PCSPD+  C+++ CCG+++GT +TV++ G      QLLR+LT+DYR +N   R  I+ +       AS  LQ        T + +S G G      CP  +  ++G CY + + +  +Y +A  +CQ +GA L  I S  END++  +     GW+
Sbjct:  145 KTEGCFSKFDFLLSQTYPAVEIDNRVCQAFCASQRFSVSAT---SLNTCYCGNNYPSAFFKVKDDICDNPCSPDKTYCFVYACCGSRDGTYFTVAFAG------QLLRQLTYDYRMSNPRLRDHIKTLM-----GASAPLQVMSSNGLSTGVVMSGGAGIGLQGSCPDHYSEFKGACYSRVYGKMMSYIQAKERCQEDGASLAVITSREENDYLTRMLFQRPGWI 355          
The following BLAST results are available for this feature:
BLAST of NO01G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29088.19.200e-22249.50wsc domain-containing protein [Nannochloropsis gad... [more]
EWM26828.18.500e-3435.81macrophage mannose receptor 1 [Nannochloropsis gad... [more]
EWM26794.19.700e-3034.22low affinity immunoglobulin epsilon fc receptor [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008197NSK008197Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01610.1NO01G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576342gene_137Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g43gene1531Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01610.1NO01G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01610 ID=NO01G01610|Name=NO01G01610|organism=Nannochloropsis oceanica|type=gene|length=2631bp
ACAGCCTCGACCAACCTCCTGCTTCCATGCCCGACGCCGGGGGCCACAGT
CCCTGCGCACATGCTTTCAGGTCTATGCCGGCTTGGAGGGCGCCTAAATG
AACCCCATCGCGGTTGCACTTTTGTGGTCCTTATACTTGCAGCATGTATA
CGCCCAGGAAATGGACAGGAAGCCCTTTGCACAGTGGCCTATAGGTGGCA
GGGACGAGCAAGTGGAAGGATGTTTCAATAATTTCGACGCCCAAATTTCC
ATTTTACTTCGGCCCGAAGATCTGAGCAACCTGCGGTGTCAAGCACTTTG
CACCGAACAGGGTTATGCCTTGGCTGCCACTGGCGGGGGAGCCAGCAGCA
CGTGCTGGTGCGGAAACAACCATCCGGGCTCGCTGCACGCGGTAGCAAAT
GGCCAGTGTAACCGTCCGTGTAGTCCGGACAGAAAATCTTGCTACCTCTT
CACGTGTTGTGGAAACCAAAATGGTACGCTCTATACTGTGAGCTGGAACG
GGGAGGCGAACCCCCTTAAACAGCTTTTGCGGCGCTTGACTCACGATTAC
CGCAACAACTCTGCATTTCGTCGCCGAATCGAGGAAATATACCTTGCAGG
CGGAGAGCGGGCATCTTTGCGGCTTCAAGAGCCGGAACACGGAGCGGAAG
GCACACCCTTGTACCTTAGCGTTGGCAACGGCTGCCCAGTGGGTTGGTGT
ATGTACAGGGGTTATTGCTACAAGCAACACTGGGCGGAGCCCTCCACCTA
CGACGAGGCCTGCGCAAAGTGTCAATCAGAGGGAGCCGATCTGGTGTTTA
TCATGAGCATTAGTGAAAATGACTTTGTACAAGATCTGTACGGCGGCTGT
CAAGGATGGCTGCACAACCGTTCGTCTCTGTCGGGTAAGCATACTTCTAC
CAGCCCCGTGAGTCACAAATGCCTGCAACTGGCGCGTGACGGCACGTGGA
TAAACAAATCCTGCCAAGGAGATGAAGATAATAAAGAGGAGGAGGAGCGT
GCTTCCTGCTTTGCCTGCAAGAAAATTTGCGCATCTCCCTCTCCCTCCCT
CCGCCCCCTCGCAGCCGAGGAGTGGGCAATCGAATTAGTGACGCCTACCT
CCTCCGTGTACCATTGGTGCACAGACTGTCATGATACTTTCCTCAAAAGC
ATCCATTCCAGCCAGTACCTCTGTGCAGATGACCAACACCGGCCATATAT
GAAGTGGGAACGTGACATAACCTGGTGCTTGTGGACCTTAGTAGTCGACC
CAGAGTCCGGGGCTGTCGTACTGCTCACACCCCACGGCACTGCCTTAACT
TACGATAAAGAGACGAGCGCTTTGGTATGTCGGCTGCTGCAATGGTCTTA
TAAGACACCGCCGCCGCCAGATACGGTAACACAACTGTTTTCAGAAGCAG
GCGTGAAGGCCCCACAAGGCACCGTTGTCTTAAACCCAAGCAGCCTGCCA
TTCGTCATCGTTGAGCGCTATTTACGCGTAACCATCCACAGTATCAACCG
GAGGCCAGGAGCTTCTGGGTTCGCCAGTAGTGGGAGTAGGAATGGACCTC
TGAGAGAATGCTCCATGGCAGTCTGTGACACGAGCTCCCGGAGCGAGTCC
TTCGGCTGCCGTCCCGTTTCTGGGCCTGGTGCCGGTTACACGCCCCTGGT
CTTTAATCAAGTGGCCTTGCGCGTCTTTGATCAGAGCTCGTACGTCTCGG
CGCGCCAGCCCTTGCCCAACGGGCGGCTAACCTGCTTGAATCAAAACCCT
ACCGAGACTGTAAATTGCGTCTTTGCCTACGGCGAGTCCTTCATCCTCGT
CCGTCGCTTTCGGGCTTATTGGGGAGTACAGCTTTTCGATACTCTCTCCA
AGCTCTTCGAAGCGACACAAGTTGACGATCTAACAGTGCAATACCAGGGA
GCGAGGCGGACAGGCAGGGACCGGACCGGAGATGCGAGTATTGGTGAAGT
GGTAAAACCAGGAATGGGCAATCACATATATTATAATAGGGAAGTAGCTG
CGGGTGGAGTAAGAGGAGCGAGAGGAAGGGCTGGAGGTGGGACCACCGAT
GGTGGAGTTACTAGAGCAAGAGAATTCGGTAGACCAAATCGAGTACAGTT
ATTGAACCGGAACAGTAAGCTGGTCCAGAATGCGTTGACGGGAGCCTTTG
ATACATTTTACCAGATTATTAATCTAAAGCTCCTAGTGGAGGTACGAAAC
TGGCAGCTGGGCCTCAATGTCGTGCCACAGACGGCGCTCACCATTCAGTA
TTGGCTCACGACGCATTACCTCAAGTACCGGTGGCGCGCAGTCTTTCAAC
CACAGGGTGGGTTCGTGCTCACTTTGTTTGGGAGGCAGATAGGTGGAGAT
GACGGATGCATTTTTTCCTTGGGCGATTTGTCCGCAGCCCAGGATTTGTT
GTTTTCTATGTACGGTACCTACGAGGAGCCAATCGATGCGGGCGTGACGA
TGACAGATATAGAACACATTGAATTATCTTACCTGGGTCTGCCAGTGCAG
CCCTGGACCGATGAGGGACTCTAGGAGGACGTAAAATGATGGGCCACGAT
TTCAAGGAGTGGGTTGAAAGCAAACAAAAAAAAAGAATCATGCGATGGTA
GATATTCAGGAAAAGCAGCCAAGCCAAAGTC
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protein sequence of NO01G01610.1

>NO01G01610.1-protein ID=NO01G01610.1-protein|Name=NO01G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MNPIAVALLWSLYLQHVYAQEMDRKPFAQWPIGGRDEQVEGCFNNFDAQI
SILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVA
NGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHD
YRNNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGW
CMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGG
CQGWLHNRSSLSGKHTSTSPVSHKCLQLARDGTWINKSCQGDEDNKEEEE
RASCFACKKICASPSPSLRPLAAEEWAIELVTPTSSVYHWCTDCHDTFLK
SIHSSQYLCADDQHRPYMKWERDITWCLWTLVVDPESGAVVLLTPHGTAL
TYDKETSALVCRLLQWSYKTPPPPDTVTQLFSEAGVKAPQGTVVLNPSSL
PFVIVERYLRVTIHSINRRPGASGFASSGSRNGPLRECSMAVCDTSSRSE
SFGCRPVSGPGAGYTPLVFNQVALRVFDQSSYVSARQPLPNGRLTCLNQN
PTETVNCVFAYGESFILVRRFRAYWGVQLFDTLSKLFEATQVDDLTVQYQ
GARRTGRDRTGDASIGEVVKPGMGNHIYYNREVAAGGVRGARGRAGGGTT
DGGVTRAREFGRPNRVQLLNRNSKLVQNALTGAFDTFYQIINLKLLVEVR
NWQLGLNVVPQTALTIQYWLTTHYLKYRWRAVFQPQGGFVLTLFGRQIGG
DDGCIFSLGDLSAAQDLLFSMYGTYEEPIDAGVTMTDIEHIELSYLGLPV
QPWTDEGL*
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Synonyms
Publications