NO01G01530, NO01G01530 (gene) Nannochloropsis oceanica

Overview
NameNO01G01530
Unique NameNO01G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3186
Alignment locationchr1:388837..392022 +

Link to JBrowse

Properties
Property NameValue
DescriptionSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:388837..392022 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR037099Fum_R/Succ_DH_flav-like_C_sf
IPR027477Succ_DH/fumarate_Rdtase_cat
IPR036188FAD/NAD-bd_sf
IPR003953FAD_bind_dom
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Homology
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BLAST of NO01G01530 vs. NCBI_GenBank
Match: OQS04518.1 (succinate dehydrogenase flavoprotein [Thraustotheca clavata])

HSP 1 Score: 984.2 bits (2543), Expect = 2.000e-283
Identity = 479/613 (78.14%), Postives = 534/613 (87.11%), Query Frame = 0 
Query:   38 GKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMG---DGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            G  +++    YTI+DHE+D VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAAL NM+EDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL +GKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIMND G C G+ A+NMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M +RAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG+EKDH++LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEV+ P         +M  D VV GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIA+ISKPG+    +P+NAGE S+  +D +R+A G   TA +R  MQKTMQ+ AAVYRTQE+L EGV KID+++  + D+KVTDRSL+WNTDLIE++EL+NLL+ AA+TMH AEARKESRGAHAREDF+ RDD NWM HT+A  D +   T I+YRPVH  TLDENE K VPP  RVY
Sbjct:   20 GARAASSKGGYTIVDHEFDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECCGVVAMNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMAIRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGREKDHIYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVVPDSSAAPDANNMYPDKVVKGLFAAGEAASASVHGANRLGANSLLDIVVFGRACALRIAEISKPGEAKRPLPSNAGEASLNMVDSLRYANGQIPTAELRLEMQKTMQNDAAVYRTQETLEEGVQKIDKIVPKFKDIKVTDRSLIWNTDLIETIELKNLLACAASTMHGAEARKESRGAHAREDFATRDDQNWMKHTLAYHDTEEGTTRITYRPVHYHTLDENECKTVPPVARVY 632
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BLAST of NO01G01530 vs. NCBI_GenBank
Match: OQR99957.1 (succinate dehydrogenase flavoprotein subunit, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 983.8 bits (2542), Expect = 2.600e-283
Identity = 485/631 (76.86%), Postives = 540/631 (85.58%), Query Frame = 0 
Query:   21 LHASPTRLAAIS-GVPAQGKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMG---DGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            L A+    AAIS  +   G  +++    YTI+DHE+D VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAAL NM+EDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIMND G C G+ A+NMEDG++HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M +RAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN +GERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLP +LLAERLPGISETAAIFAGVDV KEPIPVLPTVHYNMGGIPTNHFGEV+ P   G      M  D VV GLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIA+ISKPG+    +P+NAGE S+  +D +R+A G+  TA +R  MQKTMQ  AAVYRTQE+LAEGV KID+++  + D+KVTDRSL+WNTDLIE++EL+NLL+ A+ TMH AEARKESRGAHAREDFS RDD NWM HT+A  + +   T I+YRPVH  TLDE E K V P  RVY
Sbjct:    2 LQATSKAKAAISRALKTTGARAASTKGGYTIVDHEFDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECCGVIAMNMEDGSIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMAIRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSQGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPAELLAERLPGISETAAIFAGVDVIKEPIPVLPTVHYNMGGIPTNHFGEVVIPDTSGLPDANQMYPDKVVKGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGEAKRPLPSNAGEASIAMVDSLRYANGAIPTADLRLEMQKTMQSDAAVYRTQETLAEGVEKIDKIVPKFKDVKVTDRSLIWNTDLIETIELKNLLACASATMHGAEARKESRGAHAREDFSTRDDVNWMKHTLAYHNSEEGTTHIAYRPVHYHTLDEEECKTVAPVARVY 632
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BLAST of NO01G01530 vs. NCBI_GenBank
Match: XP_002186498.1 (succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65968.1 succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 983.4 bits (2541), Expect = 3.400e-283
Identity = 480/631 (76.07%), Postives = 544/631 (86.21%), Query Frame = 0 
Query:   19 RGLHASPTRLAAISGVPAQGKVSSTPN--AKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMGDGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            R LH    R  A++ V ++  +S++P+    YT+IDH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSL +GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+MND+G CVG+ ALNMEDGT+HRIHA NTVLATGGYGR YFSCTSAHTCTGDGNAM +R GL  +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN EGERFMERYAP+AKDLASRDVVSR+MTMEIREGRG G +KDH++LHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEVI  K   DG+   D VVPGLFA+GE+ACASVHGANRLGANSLLDIVVFGRA A RIA+I+KPGD++ D P++ G  S+ +LDK+R+A+G  +TA IR  MQ  MQ+HAAVYRT ++LAEG T ID V+  + D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTM+ AE RKESRGAHA ED+  RDD NWM HT++ FD  T +T I YRP+H  TLDE+E K VPP  RVY
Sbjct:   13 RDLH----RRVAVTSVGSK-SLSTSPHLIGDYTVIDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMNDQGECVGVVALNMEDGTIHRIHAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRQGLSNQDNEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTMEIREGRGAGPKKDHIYLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYRTTQTLAEGKTAIDGVVDKFKDIAVTDKSLVWNTDLVETLELRNLLACASTTMYGAENRKESRGAHAHEDYPTRDDENWMKHTLSYFDESTGRTEIKYRPIHYYTLDEDECKTVPPVARVY 638
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BLAST of NO01G01530 vs. NCBI_GenBank
Match: OWZ18897.1 (Succinate dehydrogenase [Phytophthora megakarya])

HSP 1 Score: 981.1 bits (2535), Expect = 1.700e-282
Identity = 485/622 (77.97%), Postives = 534/622 (85.85%), Query Frame = 0 
Query:   29 AAISGVPAQGKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMG---DGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            A  S  P  G  ++   +KYT++DHEYD VVVGAGGAGLRAAMG AEAG KTAC++KLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIMND G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK +DH+FLHLDHLPP+LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGI TNH GEV+ P   G    G +  D +VPGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA+++KPG +   MP + G +++ED+DK+R+A GS STA +R  MQKTMQ  AAVYRTQESL  G  KIDEV+  ++D+KVTDRSL+WNTDL E+LELRNLL+ A+ TMH AEARKESRGAHAREDF+ERDD NWM HT+A +  +  KT I+YR V   TLDENE K VPPF RVY
Sbjct:   25 AVRSSQPLAGIETAALTSKYTVVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNQDHIFLHLDHLPPELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIATNHMGEVVVPDLDGLPEPGKVYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGQKKRPMPKDGGLKAIEDVDKLRYADGSISTAELRLEMQKTMQVDAAVYRTQESLEAGKEKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACASCTMHGAEARKESRGAHAREDFTERDDVNWMKHTLA-YHNEEGKTHIAYRAVQDQTLDENECKHVPPFARVY 645
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BLAST of NO01G01530 vs. NCBI_GenBank
Match: XP_024576617.1 (succinate dehydrogenase [Plasmopara halstedii] >CEG40248.1 succinate dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 979.5 bits (2531), Expect = 4.800e-282
Identity = 482/619 (77.87%), Postives = 534/619 (86.27%), Query Frame = 0 
Query:   32 SGVPAQGKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMG---DGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            S  P  G  +S   +KYT++DHEYD VVVGAGGAGLRAAMG AEAG KTAC++KLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIMND G CVG+ A NMEDG+ HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P+EDPEFVQFHPTGIYGAGCLITEG RGEGGILRN EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK +DH++LHLDHLP +LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEV+ P   G      +  D +VPGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA+++KPG++   MP + G +++ED+DK+R+A G+ +TA +R  MQKTMQ  AAVYRTQESLA G  KIDEV+  ++D+KVTDRSL+WNTDL E+LELRNLL+ AA TMHAAEARKESRGAHAREDF++RDD  WM HT+A  D +  KT ++YR V   TLDENE K VPPF RVY
Sbjct:   22 SSQPVAGIETSALTSKYTVVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGSFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLEDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNRDHIYLHLDHLPAELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVVMPDVKGLPDPNKLYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGEKKRPMPKDGGLKAIEDVDKLRYANGNIATAELRLEMQKTMQVDAAVYRTQESLAAGKAKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACAACTMHAAEARKESRGAHAREDFTKRDDDKWMKHTVAYHD-EKGKTHVAYRAVQDQTLDENECKHVPPFARVY 639
[Close]
BLAST of NO01G01530 vs. NCBI_GenBank
Match: GAX14526.1 (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris])

HSP 1 Score: 974.9 bits (2519), Expect = 1.200e-280
Identity = 473/606 (78.05%), Postives = 526/606 (86.80%), Query Frame = 0 
Query:   42 STPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMGDGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            ST    YT++DH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+M+D G CVG+  LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL  +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI       G+   D +VPGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ SKPGD++PD+ A+AG  S+E LD +R+ +G+ + + +R  MQ TMQ+HAAVYRT E L EG  KIDEV+  + D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTMH A  RKESRGAHA ED   RDD NWM HT+A FD +T KTT++YRPVH  TLDE E + VPP  RVY
Sbjct:   24 STMKGDYTVVDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFESKGNFVGDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYRTTELLEEGAKKIDEVVKKFDDVYVTDKSLIWNTDLVETLELRNLLACASTTMHGANNRKESRGAHAHEDHPNRDDENWMKHTLAYFDPETGKTTLNYRPVHNFTLDEEECQVVPPMARVY 629
[Close]
BLAST of NO01G01530 vs. NCBI_GenBank
Match: GAX09996.1 (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris])

HSP 1 Score: 972.2 bits (2512), Expect = 7.700e-280
Identity = 472/606 (77.89%), Postives = 525/606 (86.63%), Query Frame = 0 
Query:   42 STPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMGDGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            ST    YT++DH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+M+D G CVG+  LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL  +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI       G+   D +VPGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ SKPGD++PD+ A+AG  S+E LD +R+ +G+ + + +R  MQ TMQ+HAAVYRT E L  G  KIDEV+  + D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTMH A  RKESRGAHA ED   RDD NWM HT+A FD +T KTT++YRPVH  TLDE E + VPP  RVY
Sbjct:   24 STMKGDYTVVDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFDSKGNFVEDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYRTTELLEGGAKKIDEVVKKFDDVYVTDKSLIWNTDLVETLELRNLLACASTTMHGANNRKESRGAHAHEDHPNRDDENWMKHTLAYFDPETGKTTLNYRPVHDFTLDEEECQVVPPMARVY 629
[Close]
BLAST of NO01G01530 vs. NCBI_GenBank
Match: CCI44157.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 969.5 bits (2505), Expect = 5.000e-279
Identity = 477/614 (77.69%), Postives = 530/614 (86.32%), Query Frame = 0 
Query:   38 GKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKK----MGDGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            G V++   +KYTIIDHEYD V+VGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELES+GLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLI+ND+G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEF+QFHPTGIYGAGCLITEG RGEGGILRN EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLP ++LAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTN+ GEVI P K    +    M  D ++ GL+AAGEA CASVHGANRLGANSLLD+VVFGRA ALRIA+ +K G+    MP + G +S+E +D +R A G   TA +R  MQK MQ  AAVYRTQ +L  G  KID+V+  ++D+KVTDRSL+WNTDLIE++EL+NLL+ AA TMHAAEARKESRGAHAREDF+ERDD+NWM HT+A F  +  +TTI+YR VH  TLDE E K VPPF RVY
Sbjct:   31 GSVTTDLTSKYTIIDHEYDAVIVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTVDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPDAVRELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLILNDDGDCVGVIAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGVPLQDPEFIQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPAEVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYMGEVIIPDKKSSRVAANEMCSDRILKGLYAAGEAGCASVHGANRLGANSLLDLVVFGRACALRIAETTKAGEVKRPMPRDGGLKSIEMVDSLRHANGDVPTAELRLEMQKIMQADAAVYRTQSTLEAGKKKIDQVVPKFNDIKVTDRSLIWNTDLIETVELKNLLACAACTMHAAEARKESRGAHAREDFTERDDSNWMKHTLA-FHGEEGQTTIAYRKVHDFTLDEKECKKVPPFARVY 643
[Close]
BLAST of NO01G01530 vs. NCBI_GenBank
Match: GAY01981.1 (succinate dehydrogenase [Pythium insidiosum])

HSP 1 Score: 969.1 bits (2504), Expect = 6.500e-279
Identity = 484/631 (76.70%), Postives = 535/631 (84.79%), Query Frame = 0 
Query:   21 LHASPTR-LAAISGVPAQGKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMGDGSMDH---DHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            L AS  R  A +S    Q   +S+  +KYT++DHEYDVVVVGAGGAGLRAAMG AEAGFKTAC++KLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +GLPFSRTEDGKIYQRAFGGQSL++GKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+DEG CVG+ A+NMEDGT HR HANNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK        LDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEV+ P   G   +D    D VV GLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA+I+KPG+    +P + G  S+ ++DK+R+A G+  TA +R  MQ+TMQ+ AAV      +AEGV KI+EV     D+KVTDRSL+WNTDLIE+ EL+NLL  A+ TMHAAEARKESRGAHAREDF+ERDD NWM HT+A +D DT KT+I+YR V   TLDENE K VPPF RVY
Sbjct:   12 LSASSARSFAVLSSQKPQAAANSSLTSKYTVVDHEYDVVVVGAGGAGLRAAMGCAEAGFKTACISKLFPTRSHTVAAQGGINAALGNMTPDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPQAVRELEGFGLPFSRTEDGKIYQRAFGGQSLEFGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMDDEGACVGVIAMNMEDGTFHRFHANNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGARGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNXXXXXXXLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVVVPDHQGIPPVDQLVSDKVVKGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAEIAKPGETKRPLPKDGGLASIAEVDKLRYANGAIPTAELRLEMQRTMQNDAAV----RVVAEGVVKINEVTPKIKDVKVTDRSLIWNTDLIETWELKNLLGCASATMHAAEARKESRGAHAREDFTERDDVNWMKHTLAYYDEDTCKTSIAYRAVMSETLDENECKKVPPFARVY 638
[Close]
BLAST of NO01G01530 vs. NCBI_GenBank
Match: XP_002293997.1 (succinate dehydrogenase flavoprotein subunit [Thalassiosira pseudonana CCMP1335] >EED89006.1 succinate dehydrogenase flavoprotein subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 966.5 bits (2497), Expect = 4.200e-278
Identity = 480/637 (75.35%), Postives = 536/637 (84.14%), Query Frame = 0 
Query:   13 VFQAQRRGLHASPTRLAAISGVP--AQGKVSSTPNAKYTIIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKMGDGSMDHDHVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVRFAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLKVTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY 648
            +  A  R   +  T+LA+ +  P  A   +S++    YTI+DH YD +V+GAGG+GLRAAMG +EAGFKTACV+KLFPTRSHTVAAQGGINAALGNM  DDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +GLPFSRTE+GKIYQRAFGGQSL +GKGGQA+RC  AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+M  +G+CVG  ALNMEDGT+HRI A NTVLATGGYGR YFSCTSAHTCTGDGNAM +RAGL  +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH +LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI      DGS + D VVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRA A RIA+I+KPGD + D PA+ G  SV +LDK+RFA GST T+ IR  MQ  MQD AAVYRT+E LAEG  +IDEV+ +++D+ VTD+SL+WNTDL+E+LELRNLL  AATTMH+AE RKESRGAHA E++ +R D  WM HT+A FD    KT I YRP+H  TLDE E K VPP  RVY
Sbjct:    1 MLSAFARRASSKATKLASTAPTPTTAVRSLSTSTTGDYTIVDHTYDALVIGAGGSGLRAAMGLSEAGFKTACVSKLFPTRSHTVAAQGGINAALGNMGPDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAHRCCAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMTPDGQCVGAMALNMEDGTLHRIKAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRAGLANQDAEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKIGYRPIHYYTLDEEECKTVPPVARVY 637
The following BLAST results are available for this feature:
BLAST of NO01G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQS04518.12.000e-28378.14succinate dehydrogenase flavoprotein [Thraustothec... [more]
OQR99957.12.600e-28376.86succinate dehydrogenase flavoprotein subunit, mito... [more]
XP_002186498.13.400e-28376.07succinate dehydrogenase flavoprotein [Phaeodactylu... [more]
OWZ18897.11.700e-28277.97Succinate dehydrogenase [Phytophthora megakarya][more]
XP_024576617.14.800e-28277.87succinate dehydrogenase [Plasmopara halstedii] >CE... [more]
GAX14526.11.200e-28078.05succinate dehydrogenase (ubiquinone) flavoprotein ... [more]
GAX09996.17.700e-28077.89succinate dehydrogenase (ubiquinone) flavoprotein ... [more]
CCI44157.15.000e-27977.69unnamed protein product [Albugo candida][more]
GAY01981.16.500e-27976.70succinate dehydrogenase [Pythium insidiosum][more]
XP_002293997.14.200e-27875.35succinate dehydrogenase flavoprotein subunit [Thal... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008206NSK008206Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01530.1NO01G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576315gene_130Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g37gene1537Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01530.1NO01G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01530 ID=NO01G01530|Name=NO01G01530|organism=Nannochloropsis oceanica|type=gene|length=3186bp
ACAGACCAACTACAAAAACTACGAAACCTACAAGCCACCAGCACAAGCAC
CGGTAAACAGGAACCTTCGGAAATGCTGCGCAACGTCAGCAACCGCCTCT
TAGGTGGCGTGTTTCAGGCTCAGCGGgtacgtaaagcgaagggagagaga
agacaagcgcgtatgtggtagtctgtattcctccacctcgccagccgaaa
ctccctgccgatctccgcacgcatcccaccagtagagccagcgtcttcac
ttcctgatcggctctctctccccgtttattgtctctcattctactctttc
ctcctccatttgctcaaaacaacagCGCGGTCTCCACGCCTCCCCTACCC
GCCTTGCCGCCATCTCCGGCGTGCCCGCCCAGGGCAAAGTCTCCTCTACC
CCCAATGCCAAGTACACGATCATCGACCACGAGTACGACGTTGTCGTGGT
CGGTGCTGGTGGTGCGGGTTTGCGCGCGGCCATGGGTGCTGCGGAGGCTG
GCTTCAAGACTGCCTGTGTCACCAAGCTATTTCCCACTCGTTCTCATACC
GTGGCGGCTCAAGGAGGGATCAATGCGGCTCTGGGGAACATGTCGGAGGA
CGACTGGCGGTGGCACATGTATGACACAGTGAAGGGAAGTGACTGGCTCG
GAGACCAGGACGCGATCCACTACATGTGTCGGGAGGCTCCGCGAGCCGTG
TACGAATTGGAGAGCTACGGACTGCCCTTCTCGAGGACGGAGGATGGCAA
GATCTACCAGAGAGCTTTTGGGGGACAGAGTTTGAAATACGGAAAGGGTG
GGCAGGCGTATCGTTGTGCGTGTGCGGCGGACAGGACGGGGCATGCTATG
TTACACACCTTGTATGGACGCTCTCTCGCGTTTAATACGACTTATTTCAT
CGAGTATTTCGCCCTGGATCTGATTATGAACGATGAAGGCCGCTGCGTGG
GCATTACGGCCCTGAACATGGAAGACGGTACTGTGCATCGAATCCACGCC
AACAATACCGTCCTTGCCACAGGTGGGTACGGCCGTGCCTATTTCTCGTG
CACTTCAGCGCACACCTGCACCGGGGACGGGAACGCTATGGTGCTTCGCG
CGGGCTTGCCTGTGGAAGACCCGGAATTCGTCCAGTTCCACCCGACAGGT
ATCTATGGCGCTGGGTGTTTGATCACAGAGGGGTGTAGGGGGGAAGGAGG
TATTTTGAGGAACAAGGAGGGAGAGCGATTCATGGAACGATACGCGCCGA
CGGCTAAGGACTTGGCGTCGAGGGATGTAGTGAGCCGGGCCATGACAATG
GAGATCAGGGAAGGTCGGGGGGTGGGGAAGGAAAAGGATCATCTGTTCTT
GCATTTGGACCATCTGCCGCCCGACCTTTTGGCGGAGCGATTGCCGGGGA
TTTCAGAGACGGCGGCCATTTTCGCGGGGGTGGATGTGACTAAAGAACCG
ATTCCTGTGTTGCCGACGGTGCATTACAACATGGGTGGGATCCCCACGAA
TCATTTCGGAGAGGTAATAGCCCCGAAGAAGATGGGAGATGGGAGCATGG
ATCATGACCACGTGGTTCCCGGCTTATTCGCGGCGGGGGAGGCGGCGTGT
GCGTCTGTGCATGGGGCGAATCGGTTGGGGGCGAACTCTCTGTTGGACAT
TGTGGTGTTTGGGCGCGCGACTGCGTTGAGGATTGCTGACATTTCGAAGC
CGGGTGATAGAGTGCCAGATATGCCGGCGAACGCGGGGGAGAGGTCGGTT
GAGGACTTGGACAAGGTGCGGTTTGCCAAGGGGAGTACCAGCACCGCGAG
CATTCGAAAGAATATGCAGAAGACCATGCAGGACCATGCGGCCGTTTATA
Ggtaggttagtgagggttacggtatatgcaggagggaggggctgggggag
ggcttcatttctattattctcttgctctggatggtgcacgccagaatgcc
tgcctgcacgagcaatcgtcaacttgaaaaataaaaccatcaaccctttc
ctccctcgcttgctcacacctcagGACGCAAGAGAGCTTGGCCGAGGGTG
TGACGAAGATCGATGAGGTCTTGTCTACTTGGCATGACTTGAAGGTGACG
GACCGTTCCCTGATGTGGAACACCGACTTGATTGAGTCGTTGGAGCTGAG
gtaaataagaagggaaagagggagagtggggaggagagcgaagactcggg
tgggtgcgcacactgttgttttcgactcggctcgcatgctcactcgtcca
ctcgcccctttcactctctcttttcctcccgctctctccctccttttcag
GAACCTCCTGTCCAATGCCGCCACCACCATGCACGCCGCAGAAGCTCGGA
AGGAAAGCCGCGGGGCACATGCCCGCGAAGACTTCTCCGAGCGCGATGAT
GCCAATTGGATGATGCACACAATTGCTGACTTCGACTATGACACGCACAA
GACCACCATCTCGTACCGCCCGGTCCACAAGAGCACGCTGGACGAGAATG
AAGTCAAGGCGGTGCCTCCTTTCAAGCGAGTGTACTAAGGAAGAATGAAA
AGAGGGGCACAGAGAGCGAACGAAGGAGGGAAAGAGACCGACTGGTTGTC
TGTTGGGAGCAGTTGAGACAAGAGGAGAAAGTCAATTTTGAGGGGAGGAC
ACGGAAGGAGAGAGGGAGAGAGGATGGGAATCGTTTAAAAAGGAGAAAAG
AGTCACGTATATTATCTATCTTTGTGTATCAGCGAAAAGAGGGAAGGGGG
CCGACTTTTTGAGGCAGCGTTGGAAGGCGGAGATAAGGCTGCTACAAATT
TTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGGATGAAAT
AACGAAGAGACAGAGGAGGAGAAAGGAGAAGAAAGGAGAAGAAAATTGAG
TCACCATCAAGAAAAAGAAGTAAATACTATCAAGGTCACTCGTAATCCAC
TTGTTTCCTCTCCATCTACTGGGCTAACCAAAATAGGGAGCAGAAAAGAA
AGGTAATGACGAAGAGGAGGAAGGGAGGGGAGCGAGAAAGAGTGGAAGTA
CAAGAAGATGAGGAAAGAGCGCGATCTACCAACTGTGTATACAGAAAGAT
TAAAGGAAATAAAAGTGGGGGAATGGCGAATGCAGTCTCCAAGCAGTAAG
ACACTCGATGACCTCTGGAATTACACTCTCTCATTT
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protein sequence of NO01G01530.1

>NO01G01530.1-protein ID=NO01G01530.1-protein|Name=NO01G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MLRNVSNRLLGGVFQAQRRGLHASPTRLAAISGVPAQGKVSSTPNAKYTI
IDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGI
NAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYG
LPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGR
SLAFNTTYFIEYFALDLIMNDEGRCVGITALNMEDGTVHRIHANNTVLAT
GGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCL
ITEGCRGEGGILRNKEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRG
VGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTV
HYNMGGIPTNHFGEVIAPKKMGDGSMDHDHVVPGLFAAGEAACASVHGAN
RLGANSLLDIVVFGRATALRIADISKPGDRVPDMPANAGERSVEDLDKVR
FAKGSTSTASIRKNMQKTMQDHAAVYRTQESLAEGVTKIDEVLSTWHDLK
VTDRSLMWNTDLIESLELRNLLSNAATTMHAAEARKESRGAHAREDFSER
DDANWMMHTIADFDYDTHKTTISYRPVHKSTLDENEVKAVPPFKRVY*
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Synonyms
Publications