NO01G01490, NO01G01490 (gene) Nannochloropsis oceanica

Overview
NameNO01G01490
Unique NameNO01G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3038
Alignment locationchr1:378300..381337 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:378300..381337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01490 vs. NCBI_GenBank
Match: EWM29105.1 (hypothetical protein Naga_100024g34 [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 1.100e-21
Identity = 266/781 (34.06%), Postives = 344/781 (44.05%), Query Frame = 0 
Query:    7 RRLKPPRXXXXXXXXXXXXXXXXXXXXXXXXXLSEQDLPS---PPKEDMDND------HHNLLPRFGTASAESASHRSCPXXXXXXXXRNNAVQASRS-QPRPSHTPPSAPSTS---FPPRLSAASFGQSAASAVSAASVTTSKRSLHEEIARLHSLLGLQSQEIEVVHESLQAKENLVRRLQTQNDDLLAEGKRSRAQLKRYQEDKLREEESLQRVLTDNRELQNKVHTLEQVXXXXXXXXXXXXXXXXXSPLREGTRAVLKESKMMEILKSRIEAEGRASRGLVEAMRGRLERGMEQLRECLVTIENLEGALKTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEKELSEMRSHRSSFPALSSSELLARCRDLEILLAKSKEVEREALKDAQEEVSRLEEERRRLLNLLEREGEQVKEEAKRAWREVEVLKKKVGKLEGKLALAVRRGGREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRKKCRNYLEAMNGVMDELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLARQALDKAEKRCHALAKETEGARRRI---------------------------QVEQDKARELEAAVSEAAERIVAYEEEMEGTRVE----------------MRATARQLQXXXXXXXXXXXXXXXXXXXXKGGKMTTMAMNGGVVNGGKEVMGGGPGKQDQLTEVLMRTAKQLQRATRKTHTLFDSVNGANDAPS 732
            R L+PPR          XXXXXXX        LSEQ+LPS     + + DND          LPR  ++S+   S               +A  A+RS    P+  P   P  S                              + LHEEI+RLH +LGLQ+QE+E+VHESL+AK++ +RR Q Q+DDLL E +++R  LKR ++ KL  EE+L+        LQ KV  LE                   SP     +  L+E+  +   K+R EA+ R +  LV+ MR RL+ GMEQLRECL TIE LE +L  +E                                                 XXXXXXXXXXXXX             +   A +  EL ARC++LE +L KSKEV+REAL+ AQ   +RLE ER        R  ++V +   +A    E  ++K  KLE  L  + R      XXXXXX            XXXXXXXXXXXXXXXXXXXXXXXX     CR+YL+AMNGVMD+LE          XXXXXXXXXXXXXXXXXX     +AL KA+ RC A  KE+  ARR +                                               ++  +EE+ G   E                M + A Q Q                      G+M+   +      G  E+      ++D+LTEVLMRT +Q+QRATR THT+F + +    A S
Sbjct:    2 RSLRPPRRLLSSEDDIEXXXXXXXNIDTEDEGLSEQELPSRELAAERNGDNDGKLDAFKTKALPRRTSSSSPYYSTTQATHPRLFEGFLASATSAARSAHAHPAQLPVHPPLMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLHEEISRLHQVLGLQAQELEMVHESLRAKDDTLRRAQGQSDDLLQEARQARVDLKRCRKSKLETEEALEEAQKRVLVLQEKVKILEMA-------VRRTGEVGNSSP--GSPQGPLEEAGSVARTKARAEAKAREAAELVDGMRARLDDGMEQLRECLATIETLETSLHRSE------------------REKIQAQGEVRRLTLSLSSQDAGGSEVTAWKXXXXXXXXXXXXXXXXXXXXXXXXXXTPAAARTIMELEARCQNLEEVLRKSKEVDREALEAAQRATARLESERDAWRGKEMRRRQEVTDAKSQA----ETYRRKALKLEDMLE-SRRXXXXXXXXXXXXARGHDQAKAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRDYLQAMNGVMDDLE----RMKAQQXXXXXXXXXXXXXXXXXXXXXXXEALSKAQARCLAFEKESLEARRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLRQQEELAGQNGEQGESRPRGQPGRSPQPMASKAPQRQEEEALPTSAHASTFHLHPHNGLGEMSQKIIPRKPSQGPPEI------REDRLTEVLMRTTQQVQRATRSTHTVFPATSDGTTAVS 740
The following BLAST results are available for this feature:
BLAST of NO01G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29105.11.100e-2134.06hypothetical protein Naga_100024g34 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008210NSK008210Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01490.1NO01G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627645gene_125Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g34gene1540Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01490.1NO01G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01490 ID=NO01G01490|Name=NO01G01490|organism=Nannochloropsis oceanica|type=gene|length=3038bp
ATGCATGCGCTCAAGGCCCGCCGGCTCAAGCCTCCCCGACCCTTGCTATC
CTCGGAGGATGAGATGGAGGAGGAGGAGGAGGAGGAGGTAGTGGTGAGGA
TGGACGAGGGAGGCTTGAGTGAACAAGATCTGCCGTCGCCACCAAAGGAA
GACATGGACAATGACCATCACAACCTCCTGCCTCGGTTCGGCACTGCCTC
CGCCGAGTCCGCCTCACATCGGAGCTGCCCTTCATCGTCCTCCTCCTCCT
CTTTCCGCAACAATGCGGTTCAAGCCAGCCGCAGTCAACCACGACCATCG
CATACACCACCATCTGCTCCTTCCACTTCCTTTCCTCCCCGCCTGTCCGC
AGCCTCCTTCGGTCAGAGCGCTGCCAGCGCCGTGAGCGCCGCGAGTGTAA
CAACGAGCAAAAGAAGTTTACACGAAGAAATTGCACGCCTCCATTCTCTC
CTTGGATTGCAGAGTCAAGAAATCGAGGTAGTTCATGAATCTTTACAAGC
GAAAGAAAATCTTGTTCGGCGCCTTCAGACACAGAATGACGATTTGCTCG
CAGAAGGGAAACGGAGCCGGGCACAGCTAAAACGATACCAGGAGGATAAA
TTGAGGGAAGAAGAATCGCTACAGCGGGTTCTAACTGATAATAGAGAACT
TCAAAATAAAGTACACACGCTAGAGCAGGTTGTTGCTGCTGCTGCTGCTT
CAGACAAGAAAAGCAGCAGGAGAAGCGACGATAGTCCTTTGCGGGAAGGG
ACGAGAGCTGTGTTAAAGGAGAGCAAAATGATGGAAATATTGAAAAGCAG
AATAGAGGCTGAGGGGAGGGCATCAAGGGGGTTAGTGGAGGCAATGAGAG
GAAGGTTAGAGAGGGGGATGGAACAACTAAGGGAGTGTCTGGTGACTATC
GAAAATTTGGAAGGAGCCTTGAAGACAGCAGAGAGAGAGAGGGCACAGGC
GCAGGAGGAAGTGAGATATTTGATGTCGATGGAGGGAAAAGAAAGAGGGA
GAGGAAGAGGAGGGAATGATCTCGCATCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGAAGCAGAGTGGAAGACGAAAGCAGTCGC
AGCGGAGGCACGGGCCGAGTTGTTGGAGAAGGAGTTGTCTGAGATGCGTT
CGCATCGCTCCTCTTTCCCTGCTTTATCCTCGAGTGAGCTGTTGGCACGC
TGCCGTGACTTGGAGATTTTGCTGGCGAAGAGTAAGGAGGTGGAGAGGGA
GGCCCTAAAAGATGCTCAAGAAGAAGTGAGCAGATTAGAAGAAGAACGAC
GACGCTTGCTGAACCTGCTTGAGAGAGAGGGCGAACAGGTAAAGGAAGAA
GCGAAAAGGGCATGGAGAGAAGTGGAGGTGTTGAAGAAGAAAGTAGGAAA
GTTGGAAGGGAAGCTGGCGTTGGCGGTGAGGAGAGGGGGGAGGGAGGAGG
AAGGGGTTGGCCATGCCCAGGACCAGCAGCAGCAGCAGCAGTTGAAAATG
AAGCAGGCAGCGGAAGAGGAGAGACAGCAACAGCATCAGCAGCAGCAATT
GGAAAAAAAACAGGCGGAGGCAGCAGGATTGCGGAAGAAATGCCGCAATT
ACCTCGAGGCAATGAATGGAGTGATGGACGAGCTCGAGAGGATGAAGAAA
ATGCAGCAACAGCAGCAACAAGAGCGACAACAACAAGAGCGAAACACCAC
GAACAGCCGCAGTAGCAAAGACTTGCTTCTCGCGCGGCAGGCTCTGGACA
AGGCGGAGAAGCGGTGTCATGCGTTGGCCAAAGAAACGGAGGGAGCCCGC
CGACGGATCCAAGTCGAACAAGACAAAGCCCGCGAGTTAGAGGCGGCGGT
CTCTGAAGCAGCCGAGAGGATCGTCGCTTACGAGGAGGAGATGGAGGGGA
CGAGGGTGGAAATGAGGGCGACTGCACGACAGTTACAGGAGTTGCAGGTG
ACACTGAAGCAGCATCAGGAGCAAGAGCAGGAGCAGCGGCAGACGAGGAA
GGGGGGGAAAATGACGACGATGGCCATGAATGGCGGAGTTGTAAATGGAG
GAAAAGAAGTAATGGGAGGAGGACCAGGCAAACAGGACCAGTTGACTGAA
GTCTTAATGAGGACAGCCAAACAGCTCCAGCGGGCCACCCGCAAGACACA
CACGCTTTTTGATTCTGTTAATGGTGCTAATGATGCCCCTTCTATAATCA
ACCCTTATTCTTCTGTTGCTCCATTAGCCCCTTCCTCCTCCATGTCATCT
TCCTCCTCGGCTTTACACGCCTTCCATAAATTGCGGAACCAGATTCAACG
CTCCCAGAGACAACGTCCAATTCAAATGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGCAGCAGCAGCGGCAGCAGGCCACACGTGGAGATGGA
GGAGAAAAATATGAATGGGTGGTTGATGAGTGGGTAGAGGAGGAAGAAAC
GAGGGAGGAGGACGGAGGTTTGGAGGGGAAAGCGGTCACTCAGTCGTTAA
ACGATATTTTGCAAAGGTGTCGTTCGTTGAAGGCGGAATTATTGACAGCA
GTGGCTGAGGAAGAGGAGGAAGAAGGAGAAGAAGGAGAAGCAGACCGACG
AGAAGTAACGCTAGAGCGACAGCCGCAGGAGTCGCAACCGCGACCAAAGA
GCCGGCGGAAGGGTTAGGGAGAGGAGAAAATCCAAACCCACAAATGTGAC
AAGAAGAAAATGAAAGGCTCAAAAATACCTCCCTTGGTGTGCACGTATGT
ATGTATGTATGTACGTACGTATGTATGTATGTATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCCTGTGTGTGTGTTTGTATGAGTAAAAACGACGGA
AAAGCCTCCCGATATGCAGCTGCGGCAAAGGCCCAAACAAGTAAAGTAAA
GTACATTGACCCCCTTTAAAGAAAAGTGAAGAAAAGTGCACACGACGCGA
CGAAAAAAATTCTTCTCGTCTATGGAAAGGGAGGGAAG
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protein sequence of NO01G01490.1

>NO01G01490.1-protein ID=NO01G01490.1-protein|Name=NO01G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=889bp
MHALKARRLKPPRPLLSSEDEMEEEEEEEVVVRMDEGGLSEQDLPSPPKE
DMDNDHHNLLPRFGTASAESASHRSCPSSSSSSSFRNNAVQASRSQPRPS
HTPPSAPSTSFPPRLSAASFGQSAASAVSAASVTTSKRSLHEEIARLHSL
LGLQSQEIEVVHESLQAKENLVRRLQTQNDDLLAEGKRSRAQLKRYQEDK
LREEESLQRVLTDNRELQNKVHTLEQVVAAAAASDKKSSRRSDDSPLREG
TRAVLKESKMMEILKSRIEAEGRASRGLVEAMRGRLERGMEQLRECLVTI
ENLEGALKTAERERAQAQEEVRYLMSMEGKERGRGRGGNDLASAAAAAAA
AAAAAAAEAEWKTKAVAAEARAELLEKELSEMRSHRSSFPALSSSELLAR
CRDLEILLAKSKEVEREALKDAQEEVSRLEEERRRLLNLLEREGEQVKEE
AKRAWREVEVLKKKVGKLEGKLALAVRRGGREEEGVGHAQDQQQQQQLKM
KQAAEEERQQQHQQQQLEKKQAEAAGLRKKCRNYLEAMNGVMDELERMKK
MQQQQQQERQQQERNTTNSRSSKDLLLARQALDKAEKRCHALAKETEGAR
RRIQVEQDKARELEAAVSEAAERIVAYEEEMEGTRVEMRATARQLQELQV
TLKQHQEQEQEQRQTRKGGKMTTMAMNGGVVNGGKEVMGGGPGKQDQLTE
VLMRTAKQLQRATRKTHTLFDSVNGANDAPSIINPYSSVAPLAPSSSMSS
SSSALHAFHKLRNQIQRSQRQRPIQMEEEEEEEEEEEEQQQRQQATRGDG
GEKYEWVVDEWVEEEETREEDGGLEGKAVTQSLNDILQRCRSLKAELLTA
VAEEEEEEGEEGEADRREVTLERQPQESQPRPKSRRKG*
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Synonyms
Publications