NO01G01410, NO01G01410 (gene) Nannochloropsis oceanica

Overview
NameNO01G01410
Unique NameNO01G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1694
Alignment locationchr1:358829..360522 -

Link to JBrowse

Properties
Property NameValue
DescriptionSynaptobrevin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:358829..360522 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
Homology
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BLAST of NO01G01410 vs. NCBI_GenBank
Match: EWM29065.1 (Synaptobrevin [Nannochloropsis gaditana])

HSP 1 Score: 307.0 bits (785), Expect = 6.200e-80
Identity = 169/284 (59.51%), Postives = 200/284 (70.42%), Query Frame = 0 
Query:    4 DATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAISEDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYLVAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSALARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSEELRAGAMVFKKQTVTLKKMVWWYVLYFSPFLAPSLRWSLYALALLHFYVPSCPPSRQKAKNQFILAGLIVAVVVLLGSWLGTKFRKK 288
            D T  PT+ YSLL+  DKNLR+T GAVARIDGVIVGTY G GTHAI E+ LQ+VTRILALRCAQLSP QR   FSE TC++ VNFHVGMDKEAR+++VAVEK+ P R++LLAV+EFAKEW E +   RSL C+EDGCR AVRE V +LARR+ED+GA DQLTRVQAGVEGVRE MQVNI+KALEGLQ TE+I+VRSEEL++ A+VFKK   TLKK++                                    QK + Q +L GLI+ V V+LG  L     KK
Sbjct:    3 DTTPLPTTNYSLLSN-DKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIM----------------------------------XXQKTRYQLLLGGLIILVAVVLGVVLDITLHKK 251
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BLAST of NO01G01410 vs. NCBI_GenBank
Match: EWM27266.1 (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-9
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 0 
Query:   87 NFHVGMDKEARIYLVAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSALARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSEELRAGAMVFKKQTVTLKKMVWW 223
            ++H+  D E RI+++  E+TYP R A   ++EF + +  +K+ T+SL   E G   +  E +  L  +Y+++   D+L  V   V+ V+  +Q N+  AL      + I   +E+L+A A +FK+   TLKK + W
Sbjct:   63 SWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFL-AKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCW 197
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BLAST of NO01G01410 vs. NCBI_GenBank
Match: XP_005818371.1 (vesicle-associated membrane protein 7B [Guillardia theta CCMP2712] >EKX31391.1 vesicle-associated membrane protein 7B [Guillardia theta CCMP2712])

HSP 1 Score: 65.1 bits (157), Expect = 4.100e-7
Identity = 53/206 (25.73%), Postives = 102/206 (49.51%), Query Frame = 0 
Query:   18 GADKNLRLTAGAVARI-DGVIVGTYRGRGTHAISEDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYLVAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSALARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSEELRAGAMVFKKQTVTLKKMVWW 223
            G   N+R    A+ RI D V+V TY        S  +L    ++L+        +       E +C       +  DK+  +Y+V VEK+YP R A   +    K++ + K +T++ +  E+     V++ +SA   +Y+D+ + +++  VQA V+ V+  M+ N+ + L   +  E++  +++ +R+ A+ FKK    L + +WW
Sbjct:   24 GCKGNVRY--AAIGRISDRVLVATYHHFTAGPPSAKYLAVAQKVLSSDKVLSQQSANVPNAVEDSCC-----LMQADKK-YMYIVFVEKSYPERTAFELLRMIRKDFTD-KDATQAESATENSMSKTVKKWMSAACTKYDDLTSVNKVAAVQAQVDDVKMTMEDNVQQMLRQHEKLEDLEDKADVMRSEAVKFKKGATQLARKMWW 220
The following BLAST results are available for this feature:
BLAST of NO01G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29065.16.200e-8059.51Synaptobrevin [Nannochloropsis gaditana][more]
EWM27266.12.000e-931.62r-snare vamp72-family [Nannochloropsis gaditana][more]
XP_005818371.14.100e-725.73vesicle-associated membrane protein 7B [Guillardia... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01410.2NO01G01410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G01410.1NO01G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576271gene_117Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01410.2NO01G01410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G01410.1NO01G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01410 ID=NO01G01410|Name=NO01G01410|organism=Nannochloropsis oceanica|type=gene|length=1694bp
ACAGGAATCGCCTCCTGTCTATTCTTCTCGGGCTCGTGCCAGTATTTCCT
CACGCTCTATCAAATACACTCCTGTATTTTACGTTGACTCTCAATCTGGT
CTGGACAAGCACCACCGGCAACATGCCCGTCGACGCCACCTCTCCTCCTA
CGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG
gtacgcatgtgtgtagagaaatgaaaggagttttctgctgccgctggtcc
tcctaccctaactttgctctgcttttgccacccgactaagtgcaacgcct
ttgtatgtatggcttcacgtgcaacagaatattggcatcaatctactttg
cacctagtccctcattatcaaccccttctctcccactccatccgtccctt
cctccctcttctctcttctccccattacagGCAGGCGCGGTGGCGCGTAT
CGACGGTGTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGCCATTA
GTGAAGATTTCTTGCAGCAGGTGACACGGATCTTGGCATTGgtacgtccg
gaaggaagttcatgttcgtgcctgttatctcttcgtgaggtcgttttcgt
ctcggtagacatgctctttcagtgtacgtctgtctataccgccttccatc
acaatctctttccccctttcatcactataccccactcctagCGATGTGCC
CAGCTCTCTCCCAATCAACGCACATTCCGGTTCAGTGAGACAACCTGCAG
CGAGAAGGTCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTATTTACT
TGGTGGCTGTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTGGCAGTC
GATGAATTCGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCGCTCTCT
GACCTGCATGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTGTCTCGG
CTCTCGCGCGGCGATATGAAGACGTGGGAGCAAACGATCAGCTGACAAGG
GTCCAGGCGGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAATATTAC
TAAAGCCTTGGAGGGACTGCAGACAACGGAGGAGATCATGGTGCGATCTG
AAGAGCTGAGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTGACGTTG
AAGAAGATGGTTTGGTGgtacgtactctacttttcgcccttcctcgctcc
ttccttgcggtggtccttatatgctcttgcactcctccatttctacgttc
cttcctgtcctccatccagGCAAAAAGCCAAGAACCAGTTTATCCTTGCG
GGGCTCATCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGGACCAA
GTTCCGGAAGAAGTAGGAGAAAGAAGAAAGAGGGGAGGAGGAGGGGAAGT
GACAATTTCTGCGTGAAGATGAGTGAATCAGTGCATGCGTGGTATGTATG
CATCCATGCGCAAGAGAAATAATGTAACATTACATGACAAAATGTAACAT
TACATGACAAGCTCAGGCAAATTAACGAGCAGAGGAGTAAGTCAATAAAG
TACAACAGCAGTTCAATAGTATGAAGAAAGAAAGAAAAAAAAGAAAAAAG
GAAAGAAGAAAGAAAGAAAGAAAGCAAGCAAGAAGGGAAGGAAGGGGGGA
AGAAATGAAATGTTGTACAATAGCAGCAGGAGCAGGATGAGCAG
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protein sequence of NO01G01410.2

>NO01G01410.2-protein ID=NO01G01410.2-protein|Name=NO01G01410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPVDATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAIS
EDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYL
VAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSA
LARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSE
ELRAGAMVFKKQTVTLKKMVWWYVLYFSPFLAPSLRWSLYALALLHFYVP
SCPPSRQKAKNQFILAGLIVAVVVLLGSWLGTKFRKK*
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protein sequence of NO01G01410.1

>NO01G01410.1-protein ID=NO01G01410.1-protein|Name=NO01G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MPVDATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAIS
EDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYL
VAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSA
LARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSE
ELRAGAMVFKKQTVTLKKMVWWQKAKNQFILAGLIVAVVVLLGSWLGTKF
RKK*
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Synonyms
Publications