NO01G01400, NO01G01400 (gene) Nannochloropsis oceanica

Overview
NameNO01G01400
Unique NameNO01G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length785
Alignment locationchr1:357622..358406 -

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Properties
Property NameValue
DescriptionPrefoldin subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:357622..358406 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016661PFDN4
IPR002777PFD_beta-like
Homology
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_002909328.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58142.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 112.1 bits (279), Expect = 1.600e-21
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            + +VRK DQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  V+L +GE+FVE SED+A EY E++ E+    ++ L AE+  +  RQ  LKK LY RFG SINLE S
Sbjct:    9 EADVRKEDQLRINEFGRNNAALHEIREQKKALKDKLDTLDDANTDLMMGEGDNVQLFIGESFVEASEDFAQEYLEKRVEEANNELKRLQAEESKLETRQAALKKVLYSRFGQSINLEDS 127          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: EJK46970.1 (hypothetical protein THAOC_34339 [Thalassiosira oceanica])

HSP 1 Score: 105.9 bits (263), Expect = 1.200e-19
Identity = 61/131 (46.56%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   35 DDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGL---------KEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLES 157
            ++  D EVR+ DQ+ INEFGRLN +  E+  +   L         ++ LEK++DA TELM+  G  V L LG+A  EV ED ATEYCE++ ++ Q R+++L  E+  I  RQ  LKK LY RFG SINLE+
Sbjct:   14 EEENDNEVRRGDQDQINEFGRLNARLSEVKAEAQRLEVAHSSILAQKHLEKIEDASTELMMAGGDTVLLRLGDAMFEVEEDDATEYCEKEADRQQERLDKLKEEEADILQRQDGLKKVLYSRFGKSINLET 144          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_009529201.1 (hypothetical protein PHYSODRAFT_315748 [Phytophthora sojae] >EGZ15452.1 hypothetical protein PHYSODRAFT_315748 [Phytophthora sojae])

HSP 1 Score: 104.8 bits (260), Expect = 2.600e-19
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            + +VRK DQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  V+L +GE+FVE SED+A EY E++ E+  A +++              LKK LYGRFG SINLE S
Sbjct:    9 EADVRKEDQLRINEFGRNNASLHEIREQKKALKDKLDTLDDANTDLMMGEGDNVQLFIGESFVEASEDFAQEYLEKRVEEANAELKKXXXXXXXXXXXXAALKKVLYGRFGQSINLEDS 127          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_024581786.1 (prefoldin family protein [Plasmopara halstedii] >CEG45417.1 prefoldin family protein [Plasmopara halstedii])

HSP 1 Score: 104.0 bits (258), Expect = 4.400e-19
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            + +VRK DQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  VRL +GE+FVE SE+ A  Y E++ E      ++L +++  + ARQ  LKK LY RFG SINLE S
Sbjct:    9 EADVRKDDQLRINEFGRNNAALHEIREQKKALKDKLDTLDDANTDLMMGEGDNVRLFIGESFVEASEESAQVYLEKRMEVANNEFKKLQSKESKLEARQAVLKKMLYSRFGQSINLEDS 127          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: GAX28979.1 (prefoldin subunit 4 [Fistulifera solaris])

HSP 1 Score: 100.9 bits (250), Expect = 3.700e-18
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 0
Query:   36 DSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGP-VRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            D  D EVR+ DQ  IN+F RLN +   L +    L+++LE LDDA TELM+  G   V L +GEAF E+ E+ ATEYCE+  EQ QA+V+            Q +LK+ LYGRFG SINLE
Sbjct:   11 DENDSEVRREDQNNINQFARLNARLHTLRQKKESLQKELESLDDASTELMMISGNTHVLLTMGEAFFEIPEEEATEYCEKLVEQYQAQVDAXXXXXXXXXXEQAKLKQLLYGRFGKSINLE 131          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_009843049.1 (hypothetical protein H257_16351 [Aphanomyces astaci] >ETV67490.1 hypothetical protein H257_16351 [Aphanomyces astaci])

HSP 1 Score: 100.5 bits (249), Expect = 4.800e-18
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            +V+VRK DQ+ INEFGR N++  +L ++L  LKE+LE LDDA TE+M+G G  V+L +GE+FVEVSE+ A EY E + ++                      KK LY RFG SINLE
Sbjct:    9 EVDVRKEDQDRINEFGRNNSRLADLRDELKALKEKLETLDDANTEIMMGAGDNVQLFIGESFVEVSEEDAQEYLEAQTDKANXXXXXXXXXXXXXXXXXXXXKKVLYARFGTSINLE 125          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: OQR87118.1 (hypothetical protein THRCLA_22936 [Thraustotheca clavata])

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-16
Identity = 47/99 (47.47%), Postives = 74/99 (74.75%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQ 138
            +V+VRK DQ+ INEFGR N++  ++ +++  L+++LE LDDA TE+M+G G  V+L +GE+FV+VSE+YA EY E + E+ QA+V +L  E+  + +RQ
Sbjct:    9 EVDVRKEDQDRINEFGRNNSRLADVRDEIKALQDKLETLDDANTEVMMGEGDDVQLFIGESFVKVSEEYAQEYLEAQTEKTQAKVAKLQEEETSLESRQ 107          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: CCA18583.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA20540.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 93.6 bits (231), Expect = 5.900e-16
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 0
Query:   41 EVRKADQEMINEFGRLNNKYIELD----------------EDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            +VR+ DQE INEFG +N +  +L                 + +  L+E+L+ L+DAVTELM+G G  V L++GE+FVE SE+ A EY E   E  +   E L  E+E +  R   LKK LYGRFG++INLE
Sbjct:   11 DVRREDQERINEFGAINFRLNQLRLEKKALQVCSCIMSTVDIIASLQEKLDTLEDAVTELMMGEGDSVHLMIGESFVERSEEGAQEYLEELTETTKKANESLVTEEEELENRHAILKKLLYGRFGDNINLE 141          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_021619192.1 (probable prefoldin subunit 4 [Manihot esculenta] >OAY44253.1 hypothetical protein MANES_08G135700 [Manihot esculenta])

HSP 1 Score: 93.6 bits (231), Expect = 5.900e-16
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            + EV   DQ+ IN+FGRLNN++ ELD+++   KE  E L+DA  EL++     VR  +GE F  VS++      E+ +E     +E+L  EK+ I A+  ELKK LYG+FG+SINLE
Sbjct:    8 ETEVTWEDQQNINKFGRLNNRFHELDDEIKIAKETNENLEDASNELILTDEEVVRFQIGEVFAHVSKEEVETRIEQMKEVTSKNLEKLEEEKDSILAQMAELKKILYGKFGDSINLE 124          
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_019439941.1 (PREDICTED: probable prefoldin subunit 4 [Lupinus angustifolius] >OIW13816.1 hypothetical protein TanjilG_31705 [Lupinus angustifolius])

HSP 1 Score: 93.6 bits (231), Expect = 5.900e-16
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            + EV   DQ+ IN+FGRLNN++ EL++++   KE  E L+DA  EL++     VR  +GE F  VS+D      E  +E    ++E+L  EKE + A+  ELKK LYG+F +SINLE
Sbjct:    8 ETEVTWEDQQNINKFGRLNNRFHELEDEIKFAKESNENLEDASNELIITDEEVVRFQIGEVFAHVSKDEVENRIEEMKEVTSHKLEKLXXEKESVLAQMSELKKILYGKFKDSINLE 124          
The following BLAST results are available for this feature:
BLAST of NO01G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002909328.11.600e-2150.42conserved hypothetical protein [Phytophthora infes... [more]
EJK46970.11.200e-1946.56hypothetical protein THAOC_34339 [Thalassiosira oc... [more]
XP_009529201.12.600e-1947.90hypothetical protein PHYSODRAFT_315748 [Phytophtho... [more]
XP_024581786.14.400e-1948.74prefoldin family protein [Plasmopara halstedii] >C... [more]
GAX28979.13.700e-1848.76prefoldin subunit 4 [Fistulifera solaris][more]
XP_009843049.14.800e-1847.01hypothetical protein H257_16351 [Aphanomyces astac... [more]
OQR87118.12.700e-1647.47hypothetical protein THRCLA_22936 [Thraustotheca c... [more]
CCA18583.15.900e-1643.51conserved hypothetical protein [Albugo laibachii N... [more]
XP_021619192.15.900e-1644.44probable prefoldin subunit 4 [Manihot esculenta] >... [more]
XP_019439941.15.900e-1643.59PREDICTED: probable prefoldin subunit 4 [Lupinus a... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008220NSK008220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01400.1NO01G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523812gene_116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g23gene1549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01400.1NO01G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01400 ID=NO01G01400|Name=NO01G01400|organism=Nannochloropsis oceanica|type=gene|length=785bp
ACATGACACAGACATGAGCACAACAGGTGTGATGCGACAAATTGACTCAC
CCAACAGCAGCAGCAGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGC
GGGAATGCGCCGGCGGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGA
CCAGGAGATGATCAATGAATTTGGACGCCTCAACAACAAATACATTGAGC
TGGACGAGGATTTGACGGGTCTCAAGgtacgtgcgatgatgtgggagaag
attgggagcagagcgctgggctctcttcgttgtttttcggctttcgttca
aggctccggtggtcctccattctgctattgaccagcaccagcttcagctt
tatcgttcgtaggcgtttccctgtttttttcctcacgaacactcctccgg
ctaccttttttttacctatttaaacaccctcctgtcaaatagGAGCAACT
GGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGTGGGAGTAGGTGGAC
CCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGGTATCAGAAGATTAT
GCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTACAAGCACGGGTGGA
GGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCGGCAGATGGAGTTAA
AGAAGGCGTTGTATGGACGATTTGGGAATTCGATCAATTTGGAAAGTTCG
TGAAGGATGGAAGGAGGCTTGGGGTAAGGGAGGATGGAAGAATGAAGAAA
TTACGATGATGGAAGAAAGCGAGAAATGAAAGTCT
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protein sequence of NO01G01400.1

>NO01G01400.1-protein ID=NO01G01400.1-protein|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSTTGVMRQIDSPNSSSSSSSGGISGGGSGNAPADDSPDVEVRKADQEMI
NEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAF
VEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGN
SINLESS*
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Synonyms
Publications