NO01G01400, NO01G01400 (gene) Nannochloropsis oceanica

Overview
NameNO01G01400
Unique NameNO01G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length785
Alignment locationchr1:357622..358406 -

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Properties
Property NameValue
DescriptionPrefoldin subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:357622..358406 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016661PFDN4
IPR002777PFD_beta-like
Homology
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: EWM29085.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 209.1 bits (531), Expect = 9.700e-51
Identity = 112/157 (71.34%), Postives = 125/157 (79.62%), Query Frame = 0 
Query:    1 MSTTGVMRQIDSPNXXXXXXXXXXXXXXXXXXPADDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            MSTTGVMR+++                       D++PDVEVRK DQEMINEFGRLNN+Y+ELDEDL  LKEQLEKLDDAVTELMVGVGGPVRL LGEAF++VSEDYATE+CERKQEQLQA+VEELG EK  IA RQMELKK LYGRFG+SINLE+S
Sbjct:    1 MSTTGVMREVNPSQ------------DKGKAKTPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_009036980.1 (hypothetical protein AURANDRAFT_26407 [Aureococcus anophagefferens] >EGB08249.1 hypothetical protein AURANDRAFT_26407 [Aureococcus anophagefferens])

HSP 1 Score: 129.0 bits (323), Expect = 1.300e-26
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 0 
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLL-GEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            DVEVRK DQ +INEFGRLN K  E   D   L++ LE+ DDA TEL +G G  V+L+L GE+FV+V ED+ATEYCE +QE++QA ++   AE E IAARQ ELK  LYGRFG+ INLE
Sbjct:    3 DVEVRKEDQLLINEFGRLNAKMHERKADRAVLQKSLEEFDDATTELAMGDGDDVKLMLGGESFVDVGEDFATEYCEAEQEKIQAEMDHEDAEIEKIAARQKELKVVLYGRFGSQINLE 120
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_002185338.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43207.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 125.2 bits (313), Expect = 1.800e-25
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 0 
Query:   34 ADDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            A++  D EVR+ DQ+ IN+F RLN +  E+  +   L++QLE+LDDA TELM+G G  V ++LGEAF+  SED ATE+CE + E++Q+RVE L  E+  I   Q ELKK LYGRFG SINLE S
Sbjct:    4 AEEENDNEVRRIDQQNINKFARLNARLHEVRAERANLQKQLERLDDASTELMMGSGDTVWMMLGEAFLATSEDDATEFCEGQVEKMQSRVERLKGEETTIVDEQAELKKILYGRFGKSINLEDS 127
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_002295894.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64611.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24
Identity = 64/121 (52.89%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:   35 DDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            ++  D EVR+ DQ+ INEFG+LN +  E+  ++  LK+ LEK+DDA TELM+G G  V L LGEA  E +ED ATE+CE + E+ QA +++L  E+  I  +Q  LKK LYGRFGNSINLE
Sbjct:   12 EEENDAEVRREDQDKINEFGQLNARLYEVRSEIARLKKLLEKIDDASTELMMGNGDKVMLRLGEAMFEATEDEATEFCEAEMEKHQAVLDDLDKEEADIVEKQAALKKVLYGRFGNSINLE 132
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: OQR97630.1 (hypothetical protein ACHHYP_10177 [Achlya hypogyna])

HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24
Identity = 61/117 (52.14%), Postives = 88/117 (75.21%), Query Frame = 0 
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            +V+VRK DQ+ INEFGR N++  ++ +++  LK++LE LDDA TE+M+G G  V+L +GE+FV+VSE+YA EY E + E+ Q ++++L AE+  + ARQ  LKK LY RFG SINLE
Sbjct:    9 EVDVRKEDQDRINEFGRNNSRLADVRDEVKALKDKLETLDDANTEIMMGEGDNVQLFIGESFVQVSEEYAQEYLEAQTEKTQDKIKKLEAEEATLEARQSALKKVLYARFGTSINLE 125
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_008868397.1 (hypothetical protein H310_05448 [Aphanomyces invadans] >ETW03013.1 hypothetical protein H310_05448 [Aphanomyces invadans])

HSP 1 Score: 120.2 bits (300), Expect = 5.900e-24
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0 
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            +V+VRK DQE INEFGR N++  +L ++L  LKE+LE LDDA TE+M+G G  V+L +GE+FVEVSE+ A EY E + E+    V +L AE+  + +RQ  LKK LY RFG SINLE
Sbjct:    9 EVDVRKEDQERINEFGRNNSRLADLRDELKALKEKLETLDDANTEIMMGEGNNVQLFIGESFVEVSEEVAQEYLEAQTEKANDAVAKLAAEETKLESRQDALKKVLYARFGTSINLE 125
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: CBJ32536.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 118.6 bits (296), Expect = 1.700e-23
Identity = 58/111 (52.25%), Postives = 85/111 (76.58%), Query Frame = 0 
Query:   46 DQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLES 157
            DQ+ INEFGRLN + +E+ +D + +K+ L+KLDDA TELM G G  V L+LG++F+E  E++AT+YCER+QE+ Q+++++L  E++ I  RQ  LKK LY RFG+SI LE+
Sbjct:   10 DQQKINEFGRLNTRLLEIRDDKSHIKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGVLKKELYARFGSSIQLEA 120
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: XP_008901150.1 (hypothetical protein PPTG_08003 [Phytophthora parasitica INRA-310] >ETI53068.1 hypothetical protein F443_03940 [Phytophthora parasitica P1569] >ETK92911.1 hypothetical protein L915_03832 [Phytophthora parasitica] >ETL46338.1 hypothetical protein L916_03773 [Phytophthora parasitica] >ETL99477.1 hypothetical protein L917_03687 [Phytophthora parasitica] >ETN13066.1 hypothetical protein PPTG_08003 [Phytophthora parasitica INRA-310] >ETO81759.1 hypothetical protein F444_03998 [Phytophthora parasitica P1976] >ETP22886.1 hypothetical protein F441_03921 [Phytophthora parasitica CJ01A1] >ETP50864.1 hypothetical protein F442_03928 [Phytophthora parasitica P10297] >KUF93827.1 prefoldin subunit 4 [Phytophthora nicotianae])

HSP 1 Score: 114.0 bits (284), Expect = 4.200e-22
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0 
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            + +VRK DQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  V+L +GE+FVE SED+A EY E++ E+    + +L AE+  + ARQ  LKK LYGRFG SINLE
Sbjct:    9 EADVRKEDQLRINEFGRNNAALHEIREQKKALKDKLDTLDDANTDLMMGEGDNVQLFIGESFVEASEDFAQEYLEKRVEEANNELTKLQAEESKLEARQAALKKVLYGRFGQSINLE 125
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: ETM52636.1 (hypothetical protein L914_03792 [Phytophthora parasitica])

HSP 1 Score: 114.0 bits (284), Expect = 4.200e-22
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0 
Query:   39 DVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLE 156
            + +VRK DQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  V+L +GE+FVE SED+A EY E++ E+    + +L AE+  + ARQ  LKK LYGRFG SINLE
Sbjct:  322 EADVRKEDQLRINEFGRNNAALHEIREQKKALKDKLDTLDDANTDLMMGEGDNVQLFIGESFVEASEDFAQEYLEKRVEEANNELTKLQAEESKLEARQAALKKVLYGRFGQSINLE 438
[Close]
BLAST of NO01G01400 vs. NCBI_GenBank
Match: OEU11536.1 (Prefoldin, subunit 4 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 113.2 bits (282), Expect = 7.200e-22
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 0 
Query:   33 PADDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVG-VGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLES 157
            PA +    EVR+ DQ+ IN+F RLN +  EL ++   +K+ LE+LDDA TELM+G  G  V LL+GE+F + SE+ ATEYCE + E++   +E L  E+  I  RQ ELKK LYGRFG SI LE+
Sbjct:    4 PAAEENSTEVRREDQDNINKFARLNARLHELRDERKIIKQSLERLDDASTELMMGSEGDNVMLLIGESFFDTSEEDATEYCESEVERMSGELEILDGEESTILERQAELKKLLYGRFGKSIQLEA 128
The following BLAST results are available for this feature:
BLAST of NO01G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29085.19.700e-5171.34Prefoldin [Nannochloropsis gaditana][more]
XP_009036980.11.300e-2660.17hypothetical protein AURANDRAFT_26407 [Aureococcus... [more]
XP_002185338.11.800e-2554.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002295894.11.200e-2452.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
OQR97630.12.000e-2452.14hypothetical protein ACHHYP_10177 [Achlya hypogyna... [more]
XP_008868397.15.900e-2454.70hypothetical protein H310_05448 [Aphanomyces invad... [more]
CBJ32536.11.700e-2352.25conserved unknown protein [Ectocarpus siliculosus][more]
XP_008901150.14.200e-2252.14hypothetical protein PPTG_08003 [Phytophthora para... [more]
ETM52636.14.200e-2252.14hypothetical protein L914_03792 [Phytophthora para... [more]
OEU11536.17.200e-2250.40Prefoldin, subunit 4 [Fragilariopsis cylindrus CCM... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008220NSK008220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01400.1NO01G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523812gene_116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g23gene1549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01400.1NO01G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01400 ID=NO01G01400|Name=NO01G01400|organism=Nannochloropsis oceanica|type=gene|length=785bp
ACATGACACAGACATGAGCACAACAGGTGTGATGCGACAAATTGACTCAC
CCAACAGCAGCAGCAGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGC
GGGAATGCGCCGGCGGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGA
CCAGGAGATGATCAATGAATTTGGACGCCTCAACAACAAATACATTGAGC
TGGACGAGGATTTGACGGGTCTCAAGgtacgtgcgatgatgtgggagaag
attgggagcagagcgctgggctctcttcgttgtttttcggctttcgttca
aggctccggtggtcctccattctgctattgaccagcaccagcttcagctt
tatcgttcgtaggcgtttccctgtttttttcctcacgaacactcctccgg
ctaccttttttttacctatttaaacaccctcctgtcaaatagGAGCAACT
GGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGTGGGAGTAGGTGGAC
CCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGGTATCAGAAGATTAT
GCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTACAAGCACGGGTGGA
GGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCGGCAGATGGAGTTAA
AGAAGGCGTTGTATGGACGATTTGGGAATTCGATCAATTTGGAAAGTTCG
TGAAGGATGGAAGGAGGCTTGGGGTAAGGGAGGATGGAAGAATGAAGAAA
TTACGATGATGGAAGAAAGCGAGAAATGAAAGTCT
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protein sequence of NO01G01400.1

>NO01G01400.1-protein ID=NO01G01400.1-protein|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSTTGVMRQIDSPNSSSSSSSGGISGGGSGNAPADDSPDVEVRKADQEMI
NEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAF
VEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGN
SINLESS*
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Synonyms
Publications