NO01G01380, NO01G01380 (gene) Nannochloropsis oceanica

Overview
NameNO01G01380
Unique NameNO01G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length941
Alignment locationchr1:354837..355777 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:354837..355777 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01380 vs. NCBI_GenBank
Match: EWM29047.1 (hypothetical protein Naga_100024g20 [Nannochloropsis gaditana])

HSP 1 Score: 63.9 bits (154), Expect = 2.900e-7
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    5 IPPSTATAVASAAITAGRKGRLAQAFGKMTVACPAQIRAYGACISAK 52
            +P S+A  VASAA +  RKGRLAQ FG+MTVACP +IRAYGACI+A+
Sbjct:    3 VPSSSAANVASAAASHARKGRLAQVFGRMTVACPGEIRAYGACIAAR 49
The following BLAST results are available for this feature:
BLAST of NO01G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29047.12.900e-768.09hypothetical protein Naga_100024g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01380.1NO01G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100024g20gene1551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01380.1NO01G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01380 ID=NO01G01380|Name=NO01G01380|organism=Nannochloropsis oceanica|type=gene|length=941bp
CTTGATTTGGCCCGCAAACGCGCTATGTAGATAGGGTATGAAGGGAGAAG
GGAGTGTTTGGAAGGAGGGGTCAGGTCATGATGATTATGATGCCTCGGCT
CCCTTTTAACCCTCAAGTCAAGCCAAGTCACGCATTACGGCAAGCATAAA
GAGAATGCAATATCTGTACGTGTGTGTAGCGTGGGAAGTAGGGACAGGGT
GAGTGAATGACCAGCAAAGGCTGGGGCCATTGAAGGCAAGCAAAGAGAAG
GCTTTTGCATGTCTCGCCGAGGGTGGGGGTGAGACTTGCGCTTCGCTTGC
CATTTGCTGGTCAAAGCACCATTTTAAACGACTCCAACATACTCACGATA
CCAGTTACACTACTACAGGAAAGGAGCAGCTTGCTTCATCGCCGCTGCCC
CCGGACTGTCTTCGAGGAATTTTGATCAGCTACAAAGCCCCTCCTCCTCC
CACCTGCACTCCAGAAGGACACGTCATGCCTTCCGCCATCCCGCCCTCCA
CTGCCACTGCCGTCGCATCTGCAGCAATCACCGCAGGGCGCAAAGGCCGT
CTTGCACAGGCCTTTGGCAAGATGACGGTGGCGTGCCCAGCGCAGgtaca
gagagaggatggggagcaggaggggaggtttgggaggtcgacacgtaatt
ctcgtatctccttcgataagctaacaggcgtgcacacactctatcatcat
accatagATCCGTGCGTATGGCGCATGTATCTCGGCCAAGCTAGAAGCAG
GAGCACAAGGGGTAGAACGTGGGGAATGCGAGGCTGAATTTGCGGCGCTG
CGGACATGCTTCCAGACCCAGCTGCAGGCCCTTCGAAAAAGCGGCGGAAG
AAAGTTTTAAATATAAGGAAAGCTAACAAGGGACATGAATTAAGTACTTA
TATAAATAGAAATAAAGTCAAACTGAAAGATATGAATGGCA
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protein sequence of NO01G01380.1

>NO01G01380.1-protein ID=NO01G01380.1-protein|Name=NO01G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MPSAIPPSTATAVASAAITAGRKGRLAQAFGKMTVACPAQIRAYGACISA
KLEAGAQGVERGECEAEFAALRTCFQTQLQALRKSGGRKF*
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Synonyms
Publications