NO01G01280, NO01G01280 (gene) Nannochloropsis oceanica

Overview
NameNO01G01280
Unique NameNO01G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr1:326418..327653 -

Link to JBrowse

Properties
Property NameValue
DescriptionYcii-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:326418..327653 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR005545YCII
Homology
BLAST of NO01G01280 vs. NCBI_GenBank
Match: EWM29094.1 (ycii-like protein [Nannochloropsis gaditana])

HSP 1 Score: 559.7 bits (1441), Expect = 7.600e-156
Identity = 281/377 (74.54%), Postives = 318/377 (84.35%), Query Frame = 0
Query:   34 PAASRRHNRTMATVPPFSLLLLSFLLLALPTTISAFLF--YPNRLSGRAAGAVPRIQLLAPAGPSSSTPSYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMFRPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGLIK 409
            PAAS RH R  AT     LL  SFLLL + + + +F F  +P   +GR  G+V     + P G SS+ PS        VL+ARRRRKGDSDAD+ERF+LDELR EKRFEEVEE+DPEMFRPSKMEYYVPPPV++IE WD+TDTRY+A+GLD+DGDE+F EQRLPNCYLHLAWARRSYLD+RSPVSVWWDYALVR+DLQGNRGNLFGMNASS SLVKAFVELDPYKKLGVYKSL GY W PLK+PDLLYAPR+QFA++ LDK  ALP+RM TREAHLAYMR S R+VTAGPLF LDAE+GSPVGSLV+FNAE+ EEA AFI +DPY KAGLF E+FLTQ+AELDVTGQHLDR+WEKYQ+EENHYDPVHDLMVGWGL+K
Sbjct:   23 PAASSRH-RHCAT-----LLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSV---GAMTPFGQSSTRPS---ISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVK 387          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: CEM18694.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.0 bits (232), Expect = 1.200e-15
Identity = 60/239 (25.10%), Postives = 101/239 (42.26%), Query Frame = 0
Query:  175 RYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRWNPLKDPDLL---YAPRVQFAVVALDK-ADALPLRMATREAHLAYMRSSGRVVTAGPL--------FDLD----------------------AEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQH 380
            +++ + LD+ G E +   R P    H+ WAR S   + +   V WD  +  E  +   GNL  + A +    K F E +PY   G+Y+  + + W+ + D  L+   +     F V   D    A  +R    E H  Y+     VV +G L         +LD                        + +PVG + +   +  E+A+ +   DP+ +AGL+   F+ Q+  LD+TG+H
Sbjct:  219 KFLVVALDKPGFEWYNYGRHPQMVDHIVWARLSLRLRNATAKVLWDMTIYNETSRHGCGNLINIAAPTLKHAKEFAEKNPYFSSGLYRHHEIFEWHDIADEHLMMGAWKGEDTFLVFGKDSDLTAAKIREQLEEKHHRYLCRCANVVHSGSLKPPRQDSQEELDRPVKQIVPLIWQLKGPNPVGAMPNNETPVGEMSIITCDSLEQAKDYARRDPFTRAGLYKNLFVAQVVHLDITGRH 457          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: CBN76233.1 (COG2350: Uncharacterized protein conserved in bacteria [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 2.600e-15
Identity = 63/216 (29.17%), Postives = 104/216 (48.15%), Query Frame = 0
Query:  200 HLAWAR---RSYLDQRS-PVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRW-NPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLD-AED---GSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGL 407
            H+ WAR   R++ D       + W+ +++        GN+F + + +       +E DPY+K G++ ++  YR+   +      +     +  + +DK  +  LR    +AHL Y   + R +  GP+   D AED     PVGSL+ FNA + EEAR     DP+ +AGL+   F+ +  E+D++G  L R         N  DP+ D+M   GL
Sbjct:  213 HVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVR--------ANRIDPMRDMMAKEGL 420          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: XP_002286598.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96239.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7 bits (208), Expect = 7.200e-13
Identity = 67/229 (29.26%), Postives = 107/229 (46.72%), Query Frame = 0
Query:  200 HLAWARRSYL-----DQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKK--LGV-------YKSLKGYRWNPLKDPDLLY---APRVQFAVVALDKADALP--LRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSP----VGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWG 406
            H+ WAR+  L     +  S   V W + L+  DLQ   G++  +++ +    +  +  DP  +  LGV         S+  YRW  ++D  L        +   ++A D+ +A+   LR      HL Y+  S RV+ AGPL     E   P    VG+L+++NA+D E A  F+ +DP   AGL+    + +   LDVTG+ +      Y  E+N Y  + + M  WG
Sbjct:  126 HVMWARKQNLYNDTFNMESMADVLWSHQLLSSDLQRTIGHVMCIDSPTIQHCRDALSNDPIVRSLLGVDSNGLCDASSIPLYRWRHIRDHTLRRDDGRDGLPNMLLAFDRPEAMSRGLRDEISNEHLEYLIRSERVIAAGPLHVATEEKSDPKSVAVGTLMLYNAKDREHAVEFVENDPAALAGLYESMTVHRYNSLDVTGKFVSE--NLYFPEQNTYQ-MKEAMGYWG 351          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: OYX32707.1 (hypothetical protein B7Y99_08215 [Caulobacterales bacterium 32-69-10])

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-12
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGE 365
            F +  LDK D+LPLR+A R+ HLAYM +SG V   GP  D   E G+P GSLV+  AE  E  RAF+ D+PY KAGL  E
Sbjct:    4 FVISFLDKPDSLPLRLANRDEHLAYMAASGMVRLGGPYLD---EAGNPKGSLVIVEAESEEAVRAFMKDEPYNKAGLIPE 80          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: XP_009036301.1 (hypothetical protein AURANDRAFT_63580 [Aureococcus anophagefferens] >EGB09191.1 hypothetical protein AURANDRAFT_63580 [Aureococcus anophagefferens])

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-11
Identity = 73/235 (31.06%), Postives = 104/235 (44.26%), Query Frame = 0
Query:  168 QWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYL--DQRSPVSVWWDYALVREDLQGNRGNLF--------GMNASSASLVKAFVELDPYKKLGVYKSLK--GYRWNPLKDP----DLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLA----ELDVTGQHLDR 383
            +W +    ++     +DG++  R  R      HL WAR S +  D+     V+       +  Q +RG++         G  AS+A LV A    DP  + GV+   +   Y W    DP    D+       +  + LD       R ATRE HL+++R + R + AGPL  L    G+PVGSLV         A  + A DPY+ AG+FG+      A    ELDVTG  L R
Sbjct:   95 EWVIPGEAFVFARFLKDGEK-SRALRRTLHLDHLFWARESAIVADRDGGPRVY-----AAQAAQDDRGDVVASVVAVVGGDAASAAPLVAA----DPLVRAGVFDEARSGAYHWTIAGDPYLQADVWPDGESPYLHLKLDAQPGANARGATREKHLSFLRKTRRTMRAGPLRPLGDAAGAPVGSLVYAFHASRGAALDWAAADPYVDAGVFGDGVQPLAAATYCELDVTGTQLTR 319          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_085790717.1 (hypothetical protein [Roseivivax jejudonensis] >SLN24724.1 YciI-like protein [Roseivivax jejudonensis])

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-11
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 0
Query:  286 AVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQ 370
            A++A DK DAL +RMA REAHLAY+  +G V  AGPL     E+G+  GSLV+ +  D   A A+ ADDPY +AGLF    L +
Sbjct:    4 ALIARDKPDALEIRMANREAHLAYVEQTGVVAQAGPLI----ENGAMAGSLVILDVPDLAAAEAWAADDPYARAGLFARVELVE 83          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_058313542.1 (YciI family protein [Thalassobius activus] >CUI40077.1 YciI-like protein [Thalassobius activus] >CUK24540.1 YciI-like protein [Thalassobius activus])

HSP 1 Score: 79.7 bits (195), Expect = 2.300e-11
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0
Query:  283 VQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLT 369
            ++FA++A DK +AL +R+A R+AH+AY++SS  V  AGP  D    DG+  GSL+V   ED  EA+A+ A+DPY KA LF    +T
Sbjct:    1 MRFALIAKDKPNALDVRLANRDAHVAYLKSSDAVEMAGPFLD---ADGNMCGSLIVLEFEDIAEAQAWAANDPYKKADLFQSVEIT 83          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_095638402.1 (hypothetical protein [Paracoccus sp. WN007] >PAU98683.1 hypothetical protein CK240_00625 [Paracoccus sp. WN007])

HSP 1 Score: 79.0 bits (193), Expect = 3.900e-11
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLF 363
            FAV+  DK   L  RM TREAHLA++  SGRV  AGP      EDG+P GSL++  A+D + A+A++A+DPY  A +F
Sbjct:    4 FAVICRDKPGRLNARMTTREAHLAWLNGSGRVQLAGPFL----EDGNPCGSLLIIEADDLDAAKAWVAEDPYAAADVF 77          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_076532724.1 (YciI family protein [Gemmobacter megaterium] >SIT14600.1 hypothetical protein SAMN05421774_106175 [Gemmobacter megaterium])

HSP 1 Score: 78.6 bits (192), Expect = 5.100e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQ 370
            FA+  LDK  AL +R+  R AHL ++ +SG+VV AGP  + D    +PVGSLVV  A D  EA AF   DPY KAGLF +  + +
Sbjct:    3 FALTCLDKPGALQIRLDNRAAHLDFLNASGKVVFAGPFIEAD----TPVGSLVVIEAADRTEAEAFATADPYAKAGLFHDVTIRE 83          
The following BLAST results are available for this feature:
BLAST of NO01G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29094.17.600e-15674.54ycii-like protein [Nannochloropsis gaditana][more]
CEM18694.11.200e-1525.10unnamed protein product [Vitrella brassicaformis C... [more]
CBN76233.12.600e-1529.17COG2350: Uncharacterized protein conserved in bact... [more]
XP_002286598.17.200e-1329.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
OYX32707.12.700e-1253.75hypothetical protein B7Y99_08215 [Caulobacterales ... [more]
XP_009036301.11.400e-1131.06hypothetical protein AURANDRAFT_63580 [Aureococcus... [more]
WP_085790717.11.400e-1150.00hypothetical protein [Roseivivax jejudonensis] >SL... [more]
WP_058313542.12.300e-1147.67YciI family protein [Thalassobius activus] >CUI400... [more]
WP_095638402.13.900e-1150.00hypothetical protein [Paracoccus sp. WN007] >PAU98... [more]
WP_076532724.15.100e-1148.24YciI family protein [Gemmobacter megaterium] >SIT1... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008234NSK008234Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01280.1NO01G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576228gene_102Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g10gene1561Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01280.1NO01G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01280 ID=NO01G01280|Name=NO01G01280|organism=Nannochloropsis oceanica|type=gene|length=1236bp
ATGCCTACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGG
CTTCGGAATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCC
CGGCCGCCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTC
TCGCTCCTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTC
TGCCTTCCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCG
TCCCCCGCATCCAACTCTTGGCCCCTGCCGGCCCAAGTTCTTCAACTCCT
TCCTACGGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCG
CAAGGGTGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGC
GTGTCGAGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTC
CGACCGTCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGA
GCAATGGGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAG
ATGGCGATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCAT
CTGGCCTGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGT
CTGGTGGGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTA
ATTTGTTCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTC
GAGCTTGACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATA
CCGGTGGAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGC
AATTCGCGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATG
GCGACCCGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGT
AACAGCGGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGG
GTTCGTTGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTT
ATTGCTGATGATCCATACATGAAAGCGGGGTTATTTGGTGAGACCTTCTT
GACGCAATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGT
GGGAGAAGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTG
ATGGTGGGGTGGGGTTTGATCAAGGGGGAGGAGTAG
back to top

protein sequence of NO01G01280.1

>NO01G01280.1-protein ID=NO01G01280.1-protein|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MPTGLSRACLNFTLVSGFGMRGPAAALQQPSSAPAASRRHNRTMATVPPF
SLLLLSFLLLALPTTISAFLFYPNRLSGRAAGAVPRIQLLAPAGPSSSTP
SYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMF
RPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLH
LAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFV
ELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRM
ATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAF
IADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDL
MVGWGLIKGEE*
back to top
Synonyms
Publications