NO01G01250, NO01G01250 (gene) Nannochloropsis oceanica

Overview
NameNO01G01250
Unique NameNO01G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr1:320929..321885 +

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Properties
Property NameValue
DescriptionTransmembrane protein 267
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:320929..321885 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026572C5orf28-like
Homology
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_017788337.1 (PREDICTED: transmembrane protein C5orf28 [Habropoda laboriosa] >KOC66932.1 Transmembrane protein C5orf28 [Habropoda laboriosa])

HSP 1 Score: 78.2 bits (191), Expect = 4.900e-11
Identity = 59/197 (29.95%), Postives = 89/197 (45.18%), Query Frame = 0
Query:   61 DNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRSLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIV 258
            DN THAF+  L W  +L+                      S ++    F +    +L +F L S +D+DHF+AA + W L  A  L+ RP  HC T    +  + W ++   +   N+    +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL + +MLP I+
Sbjct:   42 DNVTHAFVGGLTWAVILS---------------------LSKKSLIQNFSS----ILCSFCLSSIIDVDHFIAACN-WKLSDATHLEKRPFLHCTT----VPIIIWLTMNLYSSMFNQPKYSY------------------------YSWIVLASFLSHHIRDGTRRGLWFCLIG-STQPIPYYLYLTISMMLPHIL 183          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_003703854.1 (PREDICTED: transmembrane protein C5orf28 [Megachile rotundata])

HSP 1 Score: 77.8 bits (190), Expect = 6.400e-11
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            +   F L S +D+DHF+AA S W ++ A  L+ RP  HC T   +L    W    + +   N     +                        YS + L++ LSH +RDA RRG+WFC IG ST PIP+ +YLIM +MLP +++
Sbjct:   72 IFCCFCLSSFIDVDHFIAACS-WKINDATHLEKRPFLHCTTVPISL----WFIFNFYSNVLNYPKFSY------------------------YSWIILASFLSHHIRDATRRGLWFCPIG-STQPIPYYLYLIMSMMLPHVLQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_008615759.1 (hypothetical protein SDRG_11494 [Saprolegnia diclina VS20] >EQC30735.1 hypothetical protein SDRG_11494 [Saprolegnia diclina VS20])

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10
Identity = 55/195 (28.21%), Postives = 78/195 (40.00%), Query Frame = 0
Query:   60 LDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRSLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLP 255
            +DNA HA +ALL W                           ++  PR       LE + A   GS LDLDHF+ A   W+   A  L +RP GH +  + A+  L W +    +                                VR     L+  LSH LRD+ RRG+W   +  ST P+P+ IYL++ ++LP
Sbjct:   84 VDNAAHATIALLSWALTC-----------------------TVAFPRLSL--RPLEGVAALFTGSLLDLDHFIVAAG-WSFRAATSLSERPFGHAVAFVAAIALLTWWTCPVAH-------------------------------RVRAVAFVLACLLSHHLRDSYRRGLWIAPVVGSTPPVPYPIYLVLEILLP 221          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_012193605.1 (hypothetical protein SPRG_00100 [Saprolegnia parasitica CBS 223.65] >KDO35254.1 hypothetical protein SPRG_00100 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 69/228 (30.26%), Postives = 92/228 (40.35%), Query Frame = 0
Query:   28 LLPAACLAGDLLL-PRVLIPLSTTTPPLLLCLGLDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRSLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLP 255
            LL + CL  D LL  RVL  L+       L   +DNA HA +ALL W                           ++  PR+      LE + A   GS LDLDHF+ A   W+   A  L +RP GH +  + AL  L W +                                     VR     L+  LSH LRD+ RRG+W   +  ST P+P+ IYL++ V+LP
Sbjct:   56 LLLSICLLSDSLLHHRVLERLAH------LYGLMDNAAHATIALLSWALTC-----------------------TVAFPRHSL--RPLEGVAALFTGSLLDLDHFIVAAG-WSFRAATSLSERPFGHAVVFVAALALLTWWTCPVAR-------------------------------RVRAVAFVLACLLSHHLRDSYRRGLWIAPVVGSTPPVPYPIYLVLEVLLP 220          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_015430695.1 (PREDICTED: transmembrane protein C5orf28 [Dufourea novaeangliae])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            ++  F+L S +D+DHF+AA S W ++ A  L+ RP  HC T    +  + W  + + +   N     +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M +MLP I++
Sbjct:   72 IVCCFLLSSFIDVDHFIAAWS-WKINDATHLEKRPFLHCTT----VPIVLWFLMNFYSNVFNYPKLSY------------------------YSWIVLASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLSMSMMLPHILQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_017890401.1 (PREDICTED: transmembrane protein C5orf28 [Ceratina calcarata])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 0
Query:  120 FVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            F L S +D+DHF+AA S W L  A+ L+ RP  HC T    L  + W  + +     N     +                        Y+ + L++ LSH +RDA RRG+WFC IG +T PIP+ +YL M +MLP +++
Sbjct:   76 FALSSFIDVDHFIAACS-WRLSDAVHLQKRPFFHCTT----LPIVLWLVLNFYANVFNHPKLGY------------------------YTWMMLTSFLSHHIRDATRRGLWFCPIG-NTQPIPYHLYLSMSMMLPHVLQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_023021150.1 (transmembrane protein 267 [Leptinotarsa decemlineata])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 52/144 (36.11%), Postives = 70/144 (48.61%), Query Frame = 0
Query:  114 LELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIV 258
            LE+    V+ S +D+DHF AA S + L  A+ LK+RPP HC T   ++  L    + Y   S N                             R +LL L+A LSH  RDA RRG WF   G ST PIP+G+Y+I+   +P +V
Sbjct:   70 LEIAACTVMSSFIDIDHFFAARS-FQLKDAISLKNRPPLHCSTFPLSICVL-MLLVSYILQSWNLE---------------------------RITLLILTAFLSHHTRDATRRGYWFFPYG-STPPIPYGLYIILTCCIPYLV 183          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_013070509.1 (PREDICTED: transmembrane protein C5orf28 homolog [Biomphalaria glabrata])

HSP 1 Score: 75.9 bits (185), Expect = 2.400e-10
Identity = 68/235 (28.94%), Postives = 98/235 (41.70%), Query Frame = 0
Query:   27 ALLPAACLAGDLLLPRVLIPLSTTTPPLLLCLGLDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRSLQTPRYQFGNER---LELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            +LL   CL GD +L ++           +L    D+ THA +  L+W                                 Y+F  E+   L +L    L +++DLDHF+AAGSL +L  AL L+ RPP H  + + A+  LCW    Y                              +     +SL+FL++ LSH LRDA  RG+W    G  T   P  +Y+ +IV+L LIVR
Sbjct:   27 SLLSMVCLLGDYILVKL---SGIQENGNILRAVTDSTTHASVGALVW----------------------------AVAEGYEFLGEKKKWLNVLFCAFLAASVDLDHFMAAGSL-DLKKALHLQHRPPFHITSLIPAVVFLCWIIGYY------------------------------RPSMKVFSLMFLASWLSHHLRDANHRGLWLAPFG-HTPVFPSVVYIFLIVVLSLIVR 198          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_003392988.1 (transmembrane protein 267 isoform X1 [Bombus terrestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.200e-10
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 0
Query:  119 AFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            +F L S +D+DHF+AA S W L  A  L+ RP  HC T    L    W  + +     N     +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M +MLP +++
Sbjct:   75 SFCLSSFIDVDHFIAACS-WKLSDATHLEKRPFFHCTT----LPITIWIMLSFYASVFNYPKLSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STRPIPYYLYLSMSMMLPHVLQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_012534367.1 (PREDICTED: transmembrane protein C5orf28 [Monomorium pharaonis])

HSP 1 Score: 75.1 bits (183), Expect = 4.200e-10
Identity = 51/140 (36.43%), Postives = 68/140 (48.57%), Query Frame = 0
Query:  120 FVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCW-ASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            FVL S +DLDHF+AA S W++H A  L+ RP  HC T    +  L W   I   N                                 R S + L+A LSH +RD  RRG+WFC  G STSPIP+ +Y+ + + LP I++
Sbjct:   73 FVLASFIDLDHFIAARS-WHIHDATHLQKRPFLHCTT----IPILLWMLFISLAN-------------------------TFQSPLLERTSWIILAAFLSHHIRDGTRRGLWFCPFG-STSPIPYYLYVSLCMSLPYILQ 181          
The following BLAST results are available for this feature:
BLAST of NO01G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_017788337.14.900e-1129.95PREDICTED: transmembrane protein C5orf28 [Habropod... [more]
XP_003703854.16.400e-1134.97PREDICTED: transmembrane protein C5orf28 [Megachil... [more]
XP_008615759.11.400e-1028.21hypothetical protein SDRG_11494 [Saprolegnia dicli... [more]
XP_012193605.11.900e-1030.26hypothetical protein SPRG_00100 [Saprolegnia paras... [more]
XP_015430695.11.900e-1033.57PREDICTED: transmembrane protein C5orf28 [Dufourea... [more]
XP_017890401.11.900e-1034.53PREDICTED: transmembrane protein C5orf28 [Ceratina... [more]
XP_023021150.11.900e-1036.11transmembrane protein 267 [Leptinotarsa decemlinea... [more]
XP_013070509.12.400e-1028.94PREDICTED: transmembrane protein C5orf28 homolog [... [more]
XP_003392988.14.200e-1035.00transmembrane protein 267 isoform X1 [Bombus terre... [more]
XP_012534367.14.200e-1036.43PREDICTED: transmembrane protein C5orf28 [Monomori... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008237NSK008237Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01250.1NO01G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550699gene_100Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g6gene1564Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01250.1NO01G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01250 ID=NO01G01250|Name=NO01G01250|organism=Nannochloropsis oceanica|type=gene|length=957bp
ATGTACATGACATCGCCGCTCCCATCCATTGCCATGTGCCTCCGCAACTT
GGCCTCGGCTCCCCTTGTGCGGCGAGAAGCCCTGCTCCCCGCAGCCTGCC
TAGCCGGAGACCTCTTGCTTCCCCGCGTCCTCATCCCCCTGTCGACCACC
ACGCCTCCCCTCCTCCTCTGCCTGGGACTCGACAATGCAACCCATGCATT
CCTCGCCTTGCTCATATGGTGGGCAGTTCTTGCCCCCCCCCTCCCCTGGC
CACCCCCACCACCGCGCCCACCCCCGTTGCCACTTCCCCTCTACCATCGT
AGCCTTCAGACCCCTAGATATCAGTTCGGCAACGAGCGCCTCGAGTTACT
TGTGGCTTTTGTGTTAGGCAGTGCGCTGGATCTTGATCACTTCCTTGCCG
CGGGTTCGTTGTGGAATTTGCACGGTGCCCTTCGCTTGAAAGATCGTCCT
CCAGGGCATTGTCTTACTTCTCTTTTTGCATTGACAGCCCTTTGTTGGGC
TTCAATTCAGTATGGGAATGGCAGCGGCAACCGAAGGGATAGACTGCACC
ATTCGTTCTGTTGCTGCCGCTGTTCGTCTTCATGCTGTGGGTGGTGGCCA
CGCAAAGAAGACAGTGTGAGATATTCTCTCTTGTTTTTAAGCGCCACACT
ATCACACCAGCTAAGGGATGCGATCAGGCGCGGTATTTGGTTTTGTCATA
TCGGTGTATCCACTTCTCCGATCCCTTTTGGTATCTATTTGATCATGATC
GTGATGTTGCCGTTGATTGTCAGGAGGGCGTTGCGGGTTGGGGAGGAGGA
GGAAAGGGGGGAAGAAGGAGGAGGAAGGGGGGTGACAACGTACATGGCTG
TGGCAGAAGAGGAGCAAGATGAGGCAGGCTTTGAGATGGCACGGTGGCAA
CAATAGAGCATGAGAAACACAGACATCTAAGTATGTATGACAGAATGTAG
CAGCTAA
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protein sequence of NO01G01250.1

>NO01G01250.1-protein ID=NO01G01250.1-protein|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MYMTSPLPSIAMCLRNLASAPLVRREALLPAACLAGDLLLPRVLIPLSTT
TPPLLLCLGLDNATHAFLALLIWWAVLAPPLPWPPPPPRPPPLPLPLYHR
SLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRP
PGHCLTSLFALTALCWASIQYGNGSGNRRDRLHHSFCCCRCSSSCCGWWP
RKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMI
VMLPLIVRRALRVGEEEERGEEGGGRGVTTYMAVAEEEQDEAGFEMARWQ
Q*
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Synonyms
Publications