NO01G01250, NO01G01250 (gene) Nannochloropsis oceanica

Overview
NameNO01G01250
Unique NameNO01G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr1:320929..321885 +

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Properties
Property NameValue
DescriptionTransmembrane protein 267
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:320929..321885 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026572C5orf28-like
Homology
BLAST of NO01G01250 vs. NCBI_GenBank
Match: EWM29075.1 (hypothetical protein Naga_100024g6 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 3.600e-46
Identity = 124/264 (46.97%), Postives = 154/264 (58.33%), Query Frame = 0
Query:   11 AMCLRNLASAP-LVRREALLPAACLAGDLLLPRVLIPL-------STTTPPLLLCLGLDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRS---LQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQY--GNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVRRAL 262
            AM L    +AP L+ REALL  AC+AGD L P +L  L        + +PPL+L L LDN THA LA ++WW VLAPP         XXXXXXXX       L  P +      LE+L+AF+LGSALDLDHF+AA S W L G L L  RPPGHCLTSL  LTA  W    Y  G   G     +H                   ++  R SLLF+SA LSHQLRDA+R G+WFCH+G ST+P+ F +Y+++ + LPL++RR L
Sbjct:    8 AMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRXXXXXXXXXXXXXXLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLL-----QNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLL 266          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_009066670.1 (hypothetical protein LOTGIDRAFT_229868 [Lottia gigantea] >ESO82880.1 hypothetical protein LOTGIDRAFT_229868 [Lottia gigantea])

HSP 1 Score: 91.7 bits (226), Expect = 4.300e-15
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 0
Query:  110 GNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            G + + LL++FV+  ++DLDHFLAA SL+ +  AL L +RPP H  T +  L A CW  I Y          LH                     S    LLFLS+  SH +RD  RRG+WF  +G ST PIP+ +Y+++I++LPL +R
Sbjct:   86 GLDVVSLLMSFVVAVSIDLDHFLAAKSLF-IQDALSLSERPPFHASTIVIILAATCWL-IGY---------ILHLHC------------------SKILGLLFLSSGFSHHIRDGWRRGLWFPPLG-STQPIPYNLYIVLILILPLFIR 204          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: PBC31221.1 (Transmembrane protein C5orf28 [Apis cerana cerana])

HSP 1 Score: 83.2 bits (204), Expect = 1.500e-12
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVRRALRVGE 266
            + + F L S +D+DHF+AAGS W L  A  L+ RP  HC T    L    W  + + +   N+    +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M +MLP +++  +   E
Sbjct:   72 IFLCFSLSSFIDIDHFIAAGS-WKLSDATHLEKRPFFHCTT----LPVTLWLMLNFYSSVFNQPKFSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLSMSMMLPHVLQWLMEADE 191          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: OQR96872.1 (hypothetical protein ACHHYP_13162 [Achlya hypogyna])

HSP 1 Score: 82.4 bits (202), Expect = 2.600e-12
Identity = 59/203 (29.06%), Postives = 84/203 (41.38%), Query Frame = 0
Query:   60 LDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXYHRSLQTPRYQFGNERLELL---VAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVRR 260
            +DNATHA +ALL W                                 Y +  +RL+LL   +A ++GS LDLDHF+AA   W    A  L +RP GH +  + A+  + W +                                 +   +R   L L   LSHQLRDA RRG+W      ST P+P+ +YL + + LP ++ R
Sbjct:   90 VDNATHATVALLAWALACL----------------------------YAYPFQRLQLLEGVIALLIGSLLDLDHFVAAAG-WTFQAATSLSERPLGHAVAFIAAIALVVWCA-------------------------------CPRSRRIRAVALVLVCLLSHQLRDAFRRGLWIAPGVGSTPPLPYAMYLALELSLPWVLAR 232          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_016919610.1 (PREDICTED: transmembrane protein C5orf28 homolog [Apis cerana])

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-12
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            + + F L S +D+DHF+AAGS W L  A  L+ RP  HC T    L    W  + + +   N+    +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M +MLP +++
Sbjct:   72 IFLCFSLSSFIDIDHFIAAGS-WKLSDATHLEKRPFFHCTT----LPVTLWLMLNFYSSVFNQPKFSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLSMSMMLPHVLQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_008866583.1 (hypothetical protein H310_04153 [Aphanomyces invadans] >ETW05145.1 hypothetical protein H310_04153 [Aphanomyces invadans])

HSP 1 Score: 80.5 bits (197), Expect = 9.900e-12
Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 0
Query:  115 ELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVRRALR 263
            E + A  +GS LD DHF+AA + ++L  A  L DRP GH +T + A+  + W ++                                   ++R + L     LSHQLRD+ RRG+WF  +G ST P+P+ +YL++ V++PL V   LR
Sbjct:   17 EAIAAVAVGSLLDADHFVAARA-FSLRAATSLNDRPWGHSVTFIIAVALIAWKAL-------------------------------PAPFNLRGAALLFVCLLSHQLRDSFRRGLWFAPLG-STPPLPYWVYLVLEVLVPLGVGTWLR 131          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_006571427.1 (PREDICTED: transmembrane protein C5orf28 [Apis mellifera])

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-11
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            + + F L S +D+DHF+AAGS W L  A  L+ RP  HC T    L    W  + + +   N     +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M ++LP +++
Sbjct:   72 IFLCFSLSSFIDIDHFIAAGS-WKLSDATHLEKRPFFHCTTIPITL----WLMLNFYSSVFNHPKFSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLSMSMILPHVLQ 184          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_012339477.1 (PREDICTED: transmembrane protein C5orf28 homolog [Apis florea])

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-11
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            + + F L S +D+DHF+AA S W L  A  L+ RP  HC T    L    W  + + +   N     +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M +MLP +++
Sbjct:   73 IFLCFSLSSFIDIDHFIAANS-WKLSDATHLEKRPFFHCTT----LPITLWLMLNFYSNVFNHPKFSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLTMSMMLPHVLQ 185          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_006622850.1 (PREDICTED: transmembrane protein C5orf28 homolog [Apis dorsata])

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  116 LLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            + + F L S +D+DHF+AAGS W L  A  L+ RP  HC T    L    W  + + +   N     +                        YS + L++ LSH +RD  RRG+WFC IG ST PIP+ +YL M ++LP +++
Sbjct:   73 IFLCFSLSSFIDIDHFIAAGS-WKLSDATHLEKRPFFHCTT----LPITLWLMLNFYSSVFNYPKFSY------------------------YSWIILASFLSHHIRDGTRRGLWFCPIG-STQPIPYYLYLSMSMILPHVLQ 185          
BLAST of NO01G01250 vs. NCBI_GenBank
Match: XP_014782630.1 (PREDICTED: transmembrane protein C5orf28 homolog [Octopus bimaculoides] >KOF74113.1 hypothetical protein OCBIM_22036746mg [Octopus bimaculoides])

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11
Identity = 74/245 (30.20%), Postives = 110/245 (44.90%), Query Frame = 0
Query:   16 NLASAPLVRREALLPAACLAGDLLLPRVLIPLSTTTPPLLLCLGLDNATHAFLALLIWWAVLAPPLXXXXXXXXXXXXXXXXY--HRSLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNGSGNRRDRLHXXXXXXXXXXXXXXXXXXKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVR 259
            +L S  L+    LL   CL GD  LPR+          L L + +DN TH  +  L W  VL   L                +   RSL   +    +  L  L+  VL  ++D+DHFLAA S ++L  AL L  RPP HC T +  + A   +S+       +R+                           ++SLLFL+A LSH +RDA R G+W    G +T P+P+ +Y++  ++LP+ V+
Sbjct:    4 HLWSPMLIVYSVLLVLTCLIGD-HLPRMNHVGPYINRHLFLRVAIDNFTHGIIGFLSWAIVLDLDLVNTDTNAPVMFLPSSGFVPTRSLMDVQQ---SSLLACLLCMVLAMSVDVDHFLAARS-FSLQDALSLPSRPPFHCTTLIPVVVA---SSLLMTYAFHSRQFC----------------------RCFKFSLLFLTAFLSHHIRDARRHGLWLWPFG-ATPPLPYMVYILCTLLLPVAVK 217          
The following BLAST results are available for this feature:
BLAST of NO01G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29075.13.600e-4646.97hypothetical protein Naga_100024g6 [Nannochloropsi... [more]
XP_009066670.14.300e-1538.93hypothetical protein LOTGIDRAFT_229868 [Lottia gig... [more]
PBC31221.11.500e-1234.00Transmembrane protein C5orf28 [Apis cerana cerana][more]
OQR96872.12.600e-1229.06hypothetical protein ACHHYP_13162 [Achlya hypogyna... [more]
XP_016919610.13.400e-1234.97PREDICTED: transmembrane protein C5orf28 homolog [... [more]
XP_008866583.19.900e-1233.11hypothetical protein H310_04153 [Aphanomyces invad... [more]
XP_006571427.12.200e-1134.27PREDICTED: transmembrane protein C5orf28 [Apis mel... [more]
XP_012339477.12.200e-1134.27PREDICTED: transmembrane protein C5orf28 homolog [... [more]
XP_006622850.12.900e-1134.27PREDICTED: transmembrane protein C5orf28 homolog [... [more]
XP_014782630.12.900e-1130.20PREDICTED: transmembrane protein C5orf28 homolog [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008237NSK008237Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01250.1NO01G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550699gene_100Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g6gene1564Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01250.1NO01G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01250 ID=NO01G01250|Name=NO01G01250|organism=Nannochloropsis oceanica|type=gene|length=957bp
ATGTACATGACATCGCCGCTCCCATCCATTGCCATGTGCCTCCGCAACTT
GGCCTCGGCTCCCCTTGTGCGGCGAGAAGCCCTGCTCCCCGCAGCCTGCC
TAGCCGGAGACCTCTTGCTTCCCCGCGTCCTCATCCCCCTGTCGACCACC
ACGCCTCCCCTCCTCCTCTGCCTGGGACTCGACAATGCAACCCATGCATT
CCTCGCCTTGCTCATATGGTGGGCAGTTCTTGCCCCCCCCCTCCCCTGGC
CACCCCCACCACCGCGCCCACCCCCGTTGCCACTTCCCCTCTACCATCGT
AGCCTTCAGACCCCTAGATATCAGTTCGGCAACGAGCGCCTCGAGTTACT
TGTGGCTTTTGTGTTAGGCAGTGCGCTGGATCTTGATCACTTCCTTGCCG
CGGGTTCGTTGTGGAATTTGCACGGTGCCCTTCGCTTGAAAGATCGTCCT
CCAGGGCATTGTCTTACTTCTCTTTTTGCATTGACAGCCCTTTGTTGGGC
TTCAATTCAGTATGGGAATGGCAGCGGCAACCGAAGGGATAGACTGCACC
ATTCGTTCTGTTGCTGCCGCTGTTCGTCTTCATGCTGTGGGTGGTGGCCA
CGCAAAGAAGACAGTGTGAGATATTCTCTCTTGTTTTTAAGCGCCACACT
ATCACACCAGCTAAGGGATGCGATCAGGCGCGGTATTTGGTTTTGTCATA
TCGGTGTATCCACTTCTCCGATCCCTTTTGGTATCTATTTGATCATGATC
GTGATGTTGCCGTTGATTGTCAGGAGGGCGTTGCGGGTTGGGGAGGAGGA
GGAAAGGGGGGAAGAAGGAGGAGGAAGGGGGGTGACAACGTACATGGCTG
TGGCAGAAGAGGAGCAAGATGAGGCAGGCTTTGAGATGGCACGGTGGCAA
CAATAGAGCATGAGAAACACAGACATCTAAGTATGTATGACAGAATGTAG
CAGCTAA
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protein sequence of NO01G01250.1

>NO01G01250.1-protein ID=NO01G01250.1-protein|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MYMTSPLPSIAMCLRNLASAPLVRREALLPAACLAGDLLLPRVLIPLSTT
TPPLLLCLGLDNATHAFLALLIWWAVLAPPLPWPPPPPRPPPLPLPLYHR
SLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRP
PGHCLTSLFALTALCWASIQYGNGSGNRRDRLHHSFCCCRCSSSCCGWWP
RKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMI
VMLPLIVRRALRVGEEEERGEEGGGRGVTTYMAVAEEEQDEAGFEMARWQ
Q*
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Synonyms
Publications