NO01G01180, NO01G01180 (gene) Nannochloropsis oceanica

Overview
NameNO01G01180
Unique NameNO01G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr1:307127..307903 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:307127..307903 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01180 vs. NCBI_GenBank
Match: EWM29026.1 (hypothetical protein Naga_100071g3 [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 1.400e-51
Identity = 102/137 (74.45%), Postives = 117/137 (85.40%), Query Frame = 0 
Query:   49 TLSEMRPGETIKKGLRLYTHLEEEGTPLRPFFKSCRESLNGLVGRADLFVETGKAHASAAIEGLKPDLSWLGEEVGTIDEFARTHRELTVGAIGLMVALPSALGGVKRAALNGVVAAGGAACMFAMSDFFERQDKKK 186
            T+ ++RPGE  K+ LR Y HLEE+GTPLRP FKS RESLN  V R D F+ETGKAHASAAI  L+PD+SW+G+EVGT+D+FARTHRELTVGAIGL VALPSALGG +RA +NGVVAA GAA MFAMSDFFERQ+KKK
Sbjct:   39 TMKDLRPGEKAKEALRWYVHLEEKGTPLRPIFKSARESLNDAVARVDQFLETGKAHASAAIHNLEPDISWMGKEVGTVDDFARTHRELTVGAIGLAVALPSALGGARRAVINGVVAATGAAAMFAMSDFFERQEKKK 175
The following BLAST results are available for this feature:
BLAST of NO01G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29026.11.400e-5174.45hypothetical protein Naga_100071g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008252NSK008252Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01180.1NO01G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100071g3gene1571Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01180.1NO01G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01180 ID=NO01G01180|Name=NO01G01180|organism=Nannochloropsis oceanica|type=gene|length=777bp
CAAAAGCGTCATCAGAACCACCAGAGGAATCATGTCTACGGAGGAGGTCA
AGGCTGCGGCCGCAGTGGCAACAGGAGCAGCAGCAGCACCACCAGCAGCA
ACAACAACGACAACAACAGCAGTAGCAGCAGCAGCAGCCAAAGATGATAA
GAGGGAGGGCACCAATTTTTTTGGCACCTTGAGTGAGATGCGCCCCGGGG
AAACGATTAAAAAAGGACTGCGCTTGTATACGCACTTAGAAGAGGAGGGC
ACGCCACTGCGCCCCTTTTTCAAGTCATGTCGGGAAAGTCTAAACGGTTT
GGTGGGCAGGGCGGATTTGTTTGTTGAAACGGGGAAGGCACATGCGTCGG
CGGCCATTGAAGGCCTCAAGCCAGATCTGTCATGGTTAGGGGAGGAGGTG
GGCACAATTGATGAGTTCGCGAGGACGCACAGGGAGCTGACGGTTGGGGC
AATTGGCCTCATGGTAGCTTTGCCTTCGGCCTTGGGAGGGGTCAAAAGAG
CGGCACTAAATGGAGTAGTGGCAGCCGGTGGGGCGGCATGCATGTTTGCG
ATGAGTGATTTTTTTGAACGACAAGACAAAAAGAAAGTGGTTGGAAAGCC
CGTTAGTGAAAAAAAGTAAGACAAAAATGAGAGAGAGGAAGAGTCGTAGG
AAGATAAAAAAGATATAAAGAAAGGAAGAGAAGAAGAAATCGAAAAAGTA
GATGCGGAGACTTGACATACAGAATTGGGGGTCGAAGAGGAGCACAAACG
AAACAAGTATCGTGAGACGTCGAGGAC
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protein sequence of NO01G01180.1

>NO01G01180.1-protein ID=NO01G01180.1-protein|Name=NO01G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MSTEEVKAAAAVATGAAAAPPAATTTTTTAVAAAAAKDDKREGTNFFGTL
SEMRPGETIKKGLRLYTHLEEEGTPLRPFFKSCRESLNGLVGRADLFVET
GKAHASAAIEGLKPDLSWLGEEVGTIDEFARTHRELTVGAIGLMVALPSA
LGGVKRAALNGVVAAGGAACMFAMSDFFERQDKKKVVGKPVSEKK*
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Synonyms
Publications