NO01G01160, NO01G01160 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01160 vs. NCBI_GenBank
Match: PRP74631.1 (hypothetical protein PROFUN_03553 [Planoprotostelium fungivorum]) HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7 Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 0 Query: 64 QYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAREAE 243 QY+Y H NGLF++GLA + I +SI+I+ V F V R R+ + GK +KG + ++ + L +V SD + + V G +LE+NE L DP LL + + +G++AI+Q P+F+ + HL + E Y+ AR E Sbjct: 43 QYVYKHLNGLFVIGLASTHEIFS---DQSISISKVNF-------------------------------------DVGGRSRLDNVVHGKGKKGGIRLKPEEPLCQVTTSDDKVHIIRSCVAGSLLEVNEKLLTDPKLLKEKGDVEGWVAIIQ-PKFSE-KDKIDHLNSLEQYKSARGLE 179
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_002984064.1 (protein Simiate isoform X3 [Selaginella moellendorffii] >EFJ15076.1 hypothetical protein SELMODRAFT_445756 [Selaginella moellendorffii]) HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7 Identity = 69/242 (28.51%), Postives = 104/242 (42.98%), Query Frame = 0 Query: 1 MEDPEEASALLA---QAAIFPPGSLQRRFTLHYWRHAGLDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAR 240 M+D EE +A+LA +A PP + T ++ + LD +G +E H+ QYLY H NGL +VGLA ++ L+ I I + V K+ R + G+++K + + ++ L + V S+ EF V + GQ+LE+NE L+ DP LL R+P QGYIAIL P A + S L+ E Y+ R Sbjct: 1 MDDKEEENAVLALYPRAHELPPRAPPAHET-NFTHYFALD------------VGGKEFHD------QYLYRHGNGLCVVGLAPSHLALR--SPSKIKIVDYD---------------------------------------VGKKSRADMKASGRRKKDAQVLEENSSLCK-VSSEDAEFLVRCCIRGQLLEVNERLTSDPSLLSRKPASQGYIAILMPKPEAWKKAEKS-LLTREQYKQQR 180
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_005828498.1 (hypothetical protein GUITHDRAFT_112492 [Guillardia theta CCMP2712] >EKX41518.1 hypothetical protein GUITHDRAFT_112492 [Guillardia theta CCMP2712]) HSP 1 Score: 65.9 bits (159), Expect = 2.200e-7 Identity = 51/183 (27.87%), Postives = 81/183 (44.26%), Query Frame = 0 Query: 36 LDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPR 219 L +++Y T++G QEG + Q++Y H N L +VGLA +V + R+ I +V+F G+ G + + GKK+ GSL V+ D+ L VV DG F + + G +LE+N L +P LL + +G+I+I+QP R Sbjct: 38 LARERDYTHYFATNVGGQEGAD------QFVYQHFNSLCVVGLAPSHVAFRDGRR----IVAVDF-------DVGRSGD-----------------------------KTEVKPSGKKKNGSLFVKEDSRLCDVVCDDGSRFKIRAAIQGHLLEMNSNLQSNPDLLNLKASSEGFISIIQPRR 174
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_024530969.1 (protein Simiate [Selaginella moellendorffii]) HSP 1 Score: 65.1 bits (157), Expect = 3.800e-7 Identity = 72/248 (29.03%), Postives = 105/248 (42.34%), Query Frame = 0 Query: 1 MEDPEEASALLAQAAIFP---------PGSLQRRFTLHYWRHAGLDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAR 240 MED EE +A A A++P P + + FT HY+ LD +G +E H+ QYLY H NGL +VGLA ++ L+ I I + V K+ R + G+++K + + ++ L + V S+ EF V + GQ+LE+NE L+ DP LL R+P QGYIAIL P A + S L+ E Y+ R Sbjct: 1 MEDKEEENA--AVLALYPRAHELPARAPPAHETNFT-HYF---ALD------------VGGKEFHD------QYLYRHGNGLCVVGLAPSHLALR--SPSKIKIVDYD---------------------------------------VGKKSRADMKASGRRKKDAQVLEENSSLCK-VSSEDAEFLVRCCIRGQLLEVNERLTSDPSLLSRKPASQGYIAILMPKPEAWKKAEKS-LLTREQYKQQR 181
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_008680006.1 (FAM206 family protein [Zea mays] >AQK61034.1 AP-3 complex subunit mu [Zea mays] >AQK61037.1 AP-3 complex subunit mu [Zea mays]) HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7 Identity = 46/156 (29.49%), Postives = 72/156 (46.15%), Query Frame = 0 Query: 61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217 G QY+Y HPNGL +VGLA +V+ K E I++V+F V K R + GK+++ + H++ ++ L +V ++D + F V V G +LE+NE L + P LL + +GYIA+ QP Sbjct: 63 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGVISTVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAVFQP 176
BLAST of NO01G01160 vs. NCBI_GenBank
Match: EES06178.3 (hypothetical protein SORBI_3004G017400 [Sorghum bicolor]) HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7 Identity = 47/156 (30.13%), Postives = 71/156 (45.51%), Query Frame = 0 Query: 61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217 G QY+Y HPNGL +VGLA +V+ K E I +V+F V K R + GK+++ + H++ ++ L +V ++D + F V V G +LE+NE L + P LL + +GYIAI QP Sbjct: 114 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGAITAVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAIFQP 227
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_021315011.1 (FAM206 family protein [Sorghum bicolor]) HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7 Identity = 47/156 (30.13%), Postives = 71/156 (45.51%), Query Frame = 0 Query: 61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217 G QY+Y HPNGL +VGLA +V+ K E I +V+F V K R + GK+++ + H++ ++ L +V ++D + F V V G +LE+NE L + P LL + +GYIAI QP Sbjct: 64 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGAITAVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAIFQP 177 The following BLAST results are available for this feature:
BLAST of NO01G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01160 ID=NO01G01160|Name=NO01G01160|organism=Nannochloropsis oceanica|type=gene|length=1162bpback to top protein sequence of NO01G01160.1 >NO01G01160.1-protein ID=NO01G01160.1-protein|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bpback to top Synonyms
Publications
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