NO01G01160, NO01G01160 (gene) Nannochloropsis oceanica

Overview
NameNO01G01160
Unique NameNO01G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1162
Alignment locationchr1:295536..296697 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein Simiate
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:295536..296697 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
Homology
BLAST of NO01G01160 vs. NCBI_GenBank
Match: PRP74631.1 (hypothetical protein PROFUN_03553 [Planoprotostelium fungivorum])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 0
Query:   64 QYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAREAE 243
            QY+Y H NGLF++GLA  + I      +SI+I+ V F                                      V  R R+ +   GK +KG + ++ +  L +V  SD +   +   V G +LE+NE L  DP LL  + + +G++AI+Q P+F+     + HL + E Y+ AR  E
Sbjct:   43 QYVYKHLNGLFVIGLASTHEIFS---DQSISISKVNF-------------------------------------DVGGRSRLDNVVHGKGKKGGIRLKPEEPLCQVTTSDDKVHIIRSCVAGSLLEVNEKLLTDPKLLKEKGDVEGWVAIIQ-PKFSE-KDKIDHLNSLEQYKSARGLE 179          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_002984064.1 (protein Simiate isoform X3 [Selaginella moellendorffii] >EFJ15076.1 hypothetical protein SELMODRAFT_445756 [Selaginella moellendorffii])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 69/242 (28.51%), Postives = 104/242 (42.98%), Query Frame = 0
Query:    1 MEDPEEASALLA---QAAIFPPGSLQRRFTLHYWRHAGLDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAR 240
            M+D EE +A+LA   +A   PP +     T ++  +  LD            +G +E H+      QYLY H NGL +VGLA  ++ L+      I I   +                                       V K+ R   +  G+++K +  +  ++ L + V S+  EF V   + GQ+LE+NE L+ DP LL R+P  QGYIAIL P   A    + S L+  E Y+  R
Sbjct:    1 MDDKEEENAVLALYPRAHELPPRAPPAHET-NFTHYFALD------------VGGKEFHD------QYLYRHGNGLCVVGLAPSHLALR--SPSKIKIVDYD---------------------------------------VGKKSRADMKASGRRKKDAQVLEENSSLCK-VSSEDAEFLVRCCIRGQLLEVNERLTSDPSLLSRKPASQGYIAILMPKPEAWKKAEKS-LLTREQYKQQR 180          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_005828498.1 (hypothetical protein GUITHDRAFT_112492 [Guillardia theta CCMP2712] >EKX41518.1 hypothetical protein GUITHDRAFT_112492 [Guillardia theta CCMP2712])

HSP 1 Score: 65.9 bits (159), Expect = 2.200e-7
Identity = 51/183 (27.87%), Postives = 81/183 (44.26%), Query Frame = 0
Query:   36 LDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPR 219
            L  +++Y     T++G QEG +      Q++Y H N L +VGLA  +V  +  R+    I +V+F         G+ G                              +   +  GKK+ GSL V+ D+ L  VV  DG  F +   + G +LE+N  L  +P LL  +   +G+I+I+QP R
Sbjct:   38 LARERDYTHYFATNVGGQEGAD------QFVYQHFNSLCVVGLAPSHVAFRDGRR----IVAVDF-------DVGRSGD-----------------------------KTEVKPSGKKKNGSLFVKEDSRLCDVVCDDGSRFKIRAAIQGHLLEMNSNLQSNPDLLNLKASSEGFISIIQPRR 174          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_024530969.1 (protein Simiate [Selaginella moellendorffii])

HSP 1 Score: 65.1 bits (157), Expect = 3.800e-7
Identity = 72/248 (29.03%), Postives = 105/248 (42.34%), Query Frame = 0
Query:    1 MEDPEEASALLAQAAIFP---------PGSLQRRFTLHYWRHAGLDAQKEYQTREETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAR 240
            MED EE +A  A  A++P         P + +  FT HY+    LD            +G +E H+      QYLY H NGL +VGLA  ++ L+      I I   +                                       V K+ R   +  G+++K +  +  ++ L + V S+  EF V   + GQ+LE+NE L+ DP LL R+P  QGYIAIL P   A    + S L+  E Y+  R
Sbjct:    1 MEDKEEENA--AVLALYPRAHELPARAPPAHETNFT-HYF---ALD------------VGGKEFHD------QYLYRHGNGLCVVGLAPSHLALR--SPSKIKIVDYD---------------------------------------VGKKSRADMKASGRRKKDAQVLEENSSLCK-VSSEDAEFLVRCCIRGQLLEVNERLTSDPSLLSRKPASQGYIAILMPKPEAWKKAEKS-LLTREQYKQQR 181          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_008680006.1 (FAM206 family protein [Zea mays] >AQK61034.1 AP-3 complex subunit mu [Zea mays] >AQK61037.1 AP-3 complex subunit mu [Zea mays])

HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7
Identity = 46/156 (29.49%), Postives = 72/156 (46.15%), Query Frame = 0
Query:   61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217
            G  QY+Y HPNGL +VGLA  +V+ K    E   I++V+F                                      V K  R   +  GK+++ + H++ ++ L +V ++D + F V   V G +LE+NE L + P LL    + +GYIA+ QP
Sbjct:   63 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGVISTVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAVFQP 176          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: EES06178.3 (hypothetical protein SORBI_3004G017400 [Sorghum bicolor])

HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7
Identity = 47/156 (30.13%), Postives = 71/156 (45.51%), Query Frame = 0
Query:   61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217
            G  QY+Y HPNGL +VGLA  +V+ K    E   I +V+F                                      V K  R   +  GK+++ + H++ ++ L +V ++D + F V   V G +LE+NE L + P LL    + +GYIAI QP
Sbjct:  114 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGAITAVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAIFQP 227          
BLAST of NO01G01160 vs. NCBI_GenBank
Match: XP_021315011.1 (FAM206 family protein [Sorghum bicolor])

HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7
Identity = 47/156 (30.13%), Postives = 71/156 (45.51%), Query Frame = 0
Query:   61 GLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEFLPDNKPSGKGKRGXXXXXXXXXXXXXXXXXXXXXXXSTVIKRVRITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQP 217
            G  QY+Y HPNGL +VGLA  +V+ K    E   I +V+F                                      V K  R   +  GK+++ + H++ ++ L +V ++D + F V   V G +LE+NE L + P LL    + +GYIAI QP
Sbjct:   64 GYDQYVYRHPNGLCVVGLAPAHVVFK----EEGAITAVDF-------------------------------------NVGKSDRSEMKVTGKRKRNAQHLQENSALCKVCVND-KSFIVRCCVKGSLLEINERLIKQPDLLNTAADREGYIAIFQP 177          
The following BLAST results are available for this feature:
BLAST of NO01G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
PRP74631.11.300e-729.05hypothetical protein PROFUN_03553 [Planoprotosteli... [more]
XP_002984064.11.700e-728.51protein Simiate isoform X3 [Selaginella moellendor... [more]
XP_005828498.12.200e-727.87hypothetical protein GUITHDRAFT_112492 [Guillardia... [more]
XP_024530969.13.800e-729.03protein Simiate [Selaginella moellendorffii][more]
XP_008680006.18.400e-729.49FAM206 family protein [Zea mays] >AQK61034.1 AP-3 ... [more]
EES06178.38.400e-730.13hypothetical protein SORBI_3004G017400 [Sorghum bi... [more]
XP_021315011.18.400e-730.13FAM206 family protein [Sorghum bicolor][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01160.1NO01G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576185gene_92Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01160.1NO01G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01160 ID=NO01G01160|Name=NO01G01160|organism=Nannochloropsis oceanica|type=gene|length=1162bp
ATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTT
TCCCCCCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATG
CAGGACTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATA
GGAGAACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTA
CCACCACCCAAACGGGCTCTTTATTGTCGGTCTAGgtaagtctcctgggc
gacctggctcttgtgccccgcccgtctctcatccccttattctccctacg
tccccttctctctccacccacggtacagCTAAGGACAATGTAATATTGAA
AATGTGTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTTCTGCCTG
ACAACAAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGGCGATGTA
GGGGCAGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAGGGGCCAC
TTCCACCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGAGGTAAAA
AACAAAAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGCCCGCGTG
GTTCTCAGCGATGGAAGAGAGTTTCCGGTGTTTGGgtacgtgagggaagg
aaatgagggaaatgaaagggcaagaaaactggctgacagtcgaattatgc
taccgccagcccgacgcttgaactctctacacatatattcgacatttctt
tgattttacagAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCTT
AAGCGAAGACCCGGGTTTGCTGCTTCGTCAGgtacgctttattttacgaa
ggttccctggttttgttttattttactctgtatgtgagcgtcagcaaaaa
taaattataaagtaaatcactcgatgacctgtcatagcatcgtgaacgtg
aatcccccacctctttaacctccccatcccagCCGGAGGACCAAGGATAC
ATAGCCATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAG
TCACTTGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGC
AAGGGAAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGG
CCATCATCATAA
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protein sequence of NO01G01160.1

>NO01G01160.1-protein ID=NO01G01160.1-protein|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MEDPEEASALLAQAAIFPPGSLQRRFTLHYWRHAGLDAQKEYQTREETHI
GEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEF
LPDNKPSGKGKRGAGGGDVGAGPEATSAGASPAGATSTVIKRVRITSRGR
GKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGL
LLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAREAEGQGKDGAG
GNKDGHAPTGPSS*
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Synonyms
Publications