NO01G01140, NO01G01140 (gene) Nannochloropsis oceanica

Overview
NameNO01G01140
Unique NameNO01G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr1:289094..290679 +

Link to JBrowse

Properties
Property NameValue
DescriptionGtp cyclohydrolase ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:289094..290679 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017945DHBP_synth_RibB-like_a/b_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003935GTP cyclohydrolase II activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009231riboflavin biosynthetic process
Homology
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BLAST of NO01G01140 vs. NCBI_GenBank
Match: EWM29043.1 (gtp cyclohydrolase ii [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 2.800e-62
Identity = 167/381 (43.83%), Postives = 202/381 (53.02%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPTLALPRTVVVPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKWDYGQVQVKKALAHLNDGKAIVLVDR---HMDPXXXXXXXXXXXXXXXXXXXXXLVLLANKASEEVLSLYLQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATI----STGGGRXXXXXXXXXXXXXXXXAATLRALGREGG---REGG-----LSLSDFSTPGHIFVVSPGAAIGTAEDCAKKGLVRPSSINVRRGWALEMARLAREEGE--XXXXXXXXXXXAVAVAELIDQGTGEGLDVE 365
            MTNNPLKL+CL KLG+ VSKVVPIVVAPN FNERYLITKAERM+HTLSP LAL R++VVPP+P                                                                   G + D G  +V+ AL  L +G+ +VL+D+                            LV+LA+ AS+E LSL+L+  SG+ +CLLPP RL  LWKGSGAAATAAGLD+K ++      G G                 AATLRALG   G   REG      LSLSDFS+PGH+FVVSPGAAIGTAED A +GL RPSS++VRR WALEMAR   E+ +             +V VAEL+D+ TGEG+ VE
Sbjct:  322 MTNNPLKLECLLKLGVRVSKVVPIVVAPNVFNERYLITKAERMAHTLSPALALQRSLVVPPAP----ATAGMRGGDSGEKQEKADISREILLSRKRKGVRTWKGVRQPEEGEATGRKEVGPGRTDAGVSSGGREDAGLGEVEHALRSLREGRVVVLLDKTPGAASGATERAPDGENSGSDTHGIGADLVVLAHMASKETLSLFLRTISGVTYCLLPPARLTALWKGSGAAATAAGLDLKDSVLALWEEGRGN---EDGSRGSSAARKRAATLRALGGGDGVGEREGAGGVRELSLSDFSSPGHVFVVSPGAAIGTAEDKAMRGLARPSSVSVRREWALEMARWMEEKADSGEWKREGGTAGVSVGVAELVDRETGEGMTVE 695
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BLAST of NO01G01140 vs. NCBI_GenBank
Match: WP_010259356.1 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes timonensis] >SDZ98687.1 GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase [Alistipes timonensis JC136])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTL 48
            MTNNPLK   L+  G+ + ++VPIV+APNP+NE YL TK ERM HTL
Sbjct:  356 MTNNPLKRAGLEGYGLCIDEIVPIVIAPNPYNEHYLETKQERMHHTL 402
[Close]
BLAST of NO01G01140 vs. NCBI_GenBank
Match: WP_019150158.1 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes senegalensis])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTL 48
            MTNNPLK   L+  G+ + ++VPIV+APNP+NE YL TK ERM HTL
Sbjct:  356 MTNNPLKRAGLEGYGLCIDEIVPIVIAPNPYNEHYLETKQERMHHTL 402
[Close]
BLAST of NO01G01140 vs. NCBI_GenBank
Match: WP_064976151.1 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes sp. Marseille-P2431])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTL 48
            MTNNPLK   L+  G+ + ++VPIV+APNP+NE YL TK ERM HTL
Sbjct:  356 MTNNPLKRAGLEGYGLCIDEIVPIVIAPNPYNEHYLETKQERMHHTL 402
[Close]
BLAST of NO01G01140 vs. NCBI_GenBank
Match: WP_087263478.1 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes sp. An66] >OUN58270.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes sp. An66])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTL 48
            MTNNPLK   L+  G+ + ++VPIV+APNP+NE YL TK ERM HTL
Sbjct:  356 MTNNPLKRAGLEGYGLCIDEIVPIVIAPNPYNEHYLETKQERMHHTL 402
[Close]
BLAST of NO01G01140 vs. NCBI_GenBank
Match: WP_087309266.1 (MULTISPECIES: bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes] >OUN78403.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes sp. An54] >OUQ54625.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [Alistipes sp. An116])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTL 48
            MTNNPLK   L+  G+ + ++VPIV+APNP+NE YL TK ERM HTL
Sbjct:  356 MTNNPLKRAGLEGYGLCIDEIVPIVIAPNPYNEHYLETKQERMHHTL 402
The following BLAST results are available for this feature:
BLAST of NO01G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM29043.12.800e-6243.83gtp cyclohydrolase ii [Nannochloropsis gaditana][more]
WP_010259356.15.800e-761.70bifunctional 3,4-dihydroxy-2-butanone-4-phosphate ... [more]
WP_019150158.15.800e-761.70bifunctional 3,4-dihydroxy-2-butanone-4-phosphate ... [more]
WP_064976151.15.800e-761.70bifunctional 3,4-dihydroxy-2-butanone-4-phosphate ... [more]
WP_087263478.15.800e-761.70bifunctional 3,4-dihydroxy-2-butanone-4-phosphate ... [more]
WP_087309266.15.800e-761.70MULTISPECIES: bifunctional 3,4-dihydroxy-2-butanon... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01140.1NO01G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01140.1NO01G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01140 ID=NO01G01140|Name=NO01G01140|organism=Nannochloropsis oceanica|type=gene|length=1586bp
ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC
CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC
Ggtaagttagagacttgtgccccctctctaccctatctccttcaggaacc
cttctcttccttcgactgttttgtatgcaccatgactgacttcctcctct
tttcctaccctccctccctccctaccatcccacagGTACCTCATTACCAA
AGCTGAGCGGATGTCACACACCCTCTCCCCCACCCTCGCCCTTCCGCGAA
CCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCCCTCACAAGGGCGGTTG
CTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTCCGAGGGTTACCCGGAG
GACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGCCAAAAGCAGCAAGCAA
AGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGCGCCACCAGCTCTTGCA
GCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAATGGGATTATGGTCAGGT
GCAAGTCAAAAAAGCGCTTGCTCATTTGAATGACGGGAAGGCCATCGTCC
TGGTCGACCGCCACATGGACCCTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGGATTTGGTGCTGCTGGC
GAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTACTTACAGGCAACCAGCG
GGATTGTGTTTTGTTTATTGCCGCCCGAACGACTTGCTGAGCTCTGGAAA
GGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAGATGTTAAGGCGACAAT
TTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGAGCAAGAGGCAGACGTT
CGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGCGTTGGGGAGGGAGGGA
GGGAGGGAGGGAGGATTGTCACTGAGTGATTTTTCGACCCCGGGGCACAT
TTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACGGCGGAAGATTGTGCGA
AGAAGGGACTGGTGCGACCGTCCTCCATCAATGTGAGGAGGGGGTGGGCA
TTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAGAGAGGGAAGGAGGGAG
GGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCGGAACTGATCGATCAGG
GGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGAGGATTTCGCCAGAAGG
CACGGTCTGGTGATTATTTCGGTGCAGGATTTGCTGCGCTTCGTGAGGGA
GGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAGGAGGAGAAGGGGGGAA
GATAGCACAAGGTGATTTAGACAGGGAGGGAGGAAGGGAGGGAGGAAGGG
AGGGAAGAACCGCGGATTTAGCCTTGCCTTTCCTCTGTAGCTGTTGCTGG
CGAGGCCCTCTGATATATATACATAGCGAAATCTAGGACATGACAGCACC
AAAAACACTTCTCACTGGAAGAGAGGAAACGAGGGTGTTGATTTAAATAT
AACAAACCCCAGAAAGAAAATCAACGGGCACCCGAA
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protein sequence of NO01G01140.1

>NO01G01140.1-protein ID=NO01G01140.1-protein|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPT
LALPRTVVVPPSPPSSPSQGRLLTRKKTEVRGSPRVTRRTTAEEGGKEGG
QKQQAKIEAVAAAQVAAPPALAAATAAAGAGRKWDYGQVQVKKALAHLND
GKAIVLVDRHMDPSSSSSSSSSSSSSSNRVLGGDLVLLANKASEEVLSLY
LQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATISTGGGRGGAAG
ARGRRSAAEGRAATLRALGREGGREGGLSLSDFSTPGHIFVVSPGAAIGT
AEDCAKKGLVRPSSINVRRGWALEMARLAREEGEREGGREGGGDAAVAVA
ELIDQGTGEGLDVEGSEDFARRHGLVIISVQDLLRFVREDVEEGEEEVAE
EEKGGR*
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Synonyms
Publications