NO01G01050, NO01G01050 (gene) Nannochloropsis oceanica

Overview
NameNO01G01050
Unique NameNO01G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr1:262393..263670 +

Link to JBrowse

Properties
Property NameValue
DescriptionDynein regulatory complex subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:262393..263670 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048870cell motility
GO:0048870cell motility
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
GO:0031514motile cilium
Vocabulary: INTERPRO
TermDefinition
IPR025593GAS8
Vocabulary: Molecular Function
TermDefinition
GO:0017137Rab GTPase binding
GO:0008017microtubule binding
Homology
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BLAST of NO01G01050 vs. NCBI_GenBank
Match: XP_007125546.1 (growth arrest-specific protein 8 [Physeter catodon])

HSP 1 Score: 75.5 bits (184), Expect = 4.100e-10
Identity = 73/335 (21.79%), Postives = 157/335 (46.87%), Query Frame = 0 
Query:   47 QLRHERDALIQDTQVIRQATLKYHAAWITDKENLRTTKAEVQALGVQCHDLQHAHHQRVTDCKKELRVQILGQQQEVAEHKIQAYAACQGQWQAQQRTVDG-LRQEYRFRQIQVKAHEAAQASLLVSAKKEHAYQATALIHEYEVKTERIFQDHHRQVQALNAAADVKREAEMEMLARDKAAALTAVKARQHEELHDLKEYYNKALHRQCQLLDAGEAKLNELRRKAREDHKYLAQLVKKHDQTLAQPLAKATNTLAGLESAHASYQEEKRLLQSLREQVQMKERRLLALERENEELDLRFSILCEEAARRRRTRQATILQRQQRADLLVLLREQ 381
            ++R E D   ++    +    K H+ W   +  L   KAE++    +  + +  H   +   K++++  +   Q  + E K +   A +   Q ++R  +G L ++ R  Q+ +K  E A   ++ + K +HA + T +  + E +   I   ++++V+ L    +++R+ E+  +   K   ++ +  R  +   D++ YYN+       L+ + + ++ ++RRK     K + + V    + LA PL KA + +  ++     YQ +K+ L   + ++++ E+ L +L  E E L+ RF  +  E     R   A +L+ QQ+     L+ E+
Sbjct:   12 RIREELDRERKERNYFQLERDKIHSFWEITRRQLEEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNSLMEMKAEGTVAMK-LAQKERRAQEGTLCRDMRALQVGLKEQELASEVVVKNLKLKHAEEITKIRKDCERQVREIEAKYYKKVRMLRDELELRRKTEIHEVEERKNGQISMLMQRHEDAFTDIRNYYNEITFNNLALISSLKEQVQDMRRKEEHLQKEMTE-VSAQSRRLADPLQKARDEMTEMQQQLRGYQRDKQTLLCTKARLKVAEKELKSLRWEREVLEQRFLRVQHERDELYRKFTAAVLEVQQKVGFKSLVLER 344
The following BLAST results are available for this feature:
BLAST of NO01G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_007125546.14.100e-1021.79growth arrest-specific protein 8 [Physeter catodon... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008268NSK008268Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01050.1NO01G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627612gene_81Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01050.1NO01G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01050 ID=NO01G01050|Name=NO01G01050|organism=Nannochloropsis oceanica|type=gene|length=1278bp
ATGCCTTCCAAGAAGGCGAAGAAGAAGCTGGGGTCGACCGCCGCGTTGTC
ACCCAAGAGGGGCAAGGCATCGTTCCGGCAGGCCGCCATCGATCCAAGAG
AGATGGCGCAGATCGAGgtacgcagcgtatacattgatacattttctaca
tgtcccactcaatgtatttacctatgcagtgcatacgtctttcacacatt
atccatcctccctctctcctagGCTCTGAAGGCAAAAGCAATCCAGCTCC
GCCATGAGCGGGACGCTTTAATTCAAGACACTCAGGTGATCCGGCAAGCC
ACTCTTAAATATCACGCCGCCTGGATCACGGACAAGGAGAATTTGCGCAC
CACTAAGGCCGAAGTCCAGGCCCTTGGGGTGCAATGCCACGACTTGCAAC
ATGCCCACCACCAGCGTGTCACCGATTGCAAGAAAGAGCTGCGCGTTCAA
ATTCTCGGACAACAACAAGAAGTAGCTGAGCACAAAATTCAGGCATATGC
AGCATGCCAGGGGCAGTGGCAGGCGCAGCAGAGGACCGTGGACGGCTTAC
GGCAAGAGTACCGCTTCCGTCAGATTCAAGTCAAGGCACACGAAGCTGCG
CAGGCCTCTTTGCTTGTCAGCGCCAAGAAGGAGCACGCGTACCAGGCCAC
AGCGCTTATCCATGAATATGAGGTCAAAACAGAGCGCATTTTTCAAGACC
ACCACCGTCAGGTCCAGGCGCTGAACGCCGCTGCGGACGTGAAGCGGGAG
GCCGAAATGGAGATGCTGGCCCGCGACAAGGCGGCCGCACTGACCGCTGT
CAAGGCGCGGCAACACGAGGAATTGCACGATCTTAAGGAGTACTATAACA
AGGCCCTCCACCGTCAGTGCCAGCTTCTAGATGCTGGCGAGGCCAAGCTG
AATGAGCTGCGACGCAAGGCGAGGGAGGACCACAAATACCTTGCGCAGTT
AGTGAAAAAACACGATCAGACCCTTGCCCAGCCCTTGGCAAAAGCCACGA
ATACACTTGCCGGTTTAGAGAGTGCCCATGCTTCCTACCAGGAGGAAAAG
CGGTTGCTCCAGAGCCTTCGGGAGCAGGTGCAAATGAAGGAGCGGAGGCT
GCTAGCCCTGGAGAGGGAGAACGAGGAGCTCGACCTTCGCTTCTCAATCC
TTTGTGAGGAGGCAGCGAGGCGGCGTCGTACTCGACAAGCGACTATTCTT
CAACGCCAGCAGCGGGCGGATTTGTTGGTTTTGTTGCGGGAGCAGATTGC
GCCGGCGGGAGTCGTGTGGGGGGCGTGA
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protein sequence of NO01G01050.1

>NO01G01050.1-protein ID=NO01G01050.1-protein|Name=NO01G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MPSKKAKKKLGSTAALSPKRGKASFRQAAIDPREMAQIEALKAKAIQLRH
ERDALIQDTQVIRQATLKYHAAWITDKENLRTTKAEVQALGVQCHDLQHA
HHQRVTDCKKELRVQILGQQQEVAEHKIQAYAACQGQWQAQQRTVDGLRQ
EYRFRQIQVKAHEAAQASLLVSAKKEHAYQATALIHEYEVKTERIFQDHH
RQVQALNAAADVKREAEMEMLARDKAAALTAVKARQHEELHDLKEYYNKA
LHRQCQLLDAGEAKLNELRRKAREDHKYLAQLVKKHDQTLAQPLAKATNT
LAGLESAHASYQEEKRLLQSLREQVQMKERRLLALERENEELDLRFSILC
EEAARRRRTRQATILQRQQRADLLVLLREQIAPAGVVWGA*
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Synonyms
Publications