NO01G01030, NO01G01030 (gene) Nannochloropsis oceanica

Overview
NameNO01G01030
Unique NameNO01G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr1:259834..260883 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:259834..260883 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01030 vs. NCBI_GenBank
Match: EWM29044.1 (hypothetical protein Naga_100071g16 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-35
Identity = 221/361 (61.22%), Postives = 245/361 (67.87%), Query Frame = 0 
Query:    1 MPPSRGVVVVLILCSLFSTTFVRAFHLPS---SYSSSRTHLSLNP-LSRAYNIKNHRWRVSRSRQLHASPPAGDDSPSSKXXXDVDFFFADGFSSLLDDSTKSTSKHPKSPFEGGQTILLGSEDERSPVDELPR--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFRLLRLFGNPNGMLFGAVALALGTVAFGWAWKSGSLENSSP---RMQDPEATAYMARNEGFPRDVDVTVTVDDKVVTLSQEGGEVDIL 323
            MPP+R  ++  +     S     AFH P    S S  R+ L +N  +S     ++HR   ++S    A+P   D          VD+FFADGFSSLLDDS  +  + PKSPFEGGQTILLGSEDER+PV ELPR                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXX  +FRLL +FGNPNGMLFGAVALALGTVAFGWAWKSG+LENSSP    +QDPEATAYM+R E FP+DVDVTVT+DDKVV LSQE G+VDIL
Sbjct:    1 MPPTR--LLGFLAVWFISANTAPAFHGPRPLLSASLYRSFLRVNGYMSPRVCPRSHR-TAAQSTGEEATPEKDD---------QVDYFFADGFSSLLDDSKNNAERGPKSPFEGGQTILLGSEDERAPVTELPRQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYRPPGTFDLEPGRXXXXXXXXXXXXXXXXXQQIFRLLNVFGNPNGMLFGAVALALGTVAFGWAWKSGALENSSPGQAMLQDPEATAYMSR-EAFPQDVDVTVTLDDKVVNLSQE-GDVDIL 347
The following BLAST results are available for this feature:
BLAST of NO01G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29044.11.400e-3561.22hypothetical protein Naga_100071g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008270NSK008270Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01030.1NO01G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576142gene_79Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g16gene1584Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01030.1NO01G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01030 ID=NO01G01030|Name=NO01G01030|organism=Nannochloropsis oceanica|type=gene|length=1050bp
ATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCCTTTT
CTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCCTCAT
CTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACATTAAG
AACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCCCGCC
CGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGACTTCT
TTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAGTACC
AGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTACTAGG
TAGCGAGGACGAGCGCTCTCCCGTGGACGAGCTGCCGCGCCGGGGAACGA
CTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTCCCCT
CCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGACACG
TAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCAGgtg
agggtggtcgtggctcaacctttcgcgggggtcctgtgcaagacaaaaat
ggcttcattccatccactcctcctccagCTGGTGGTACTGGTGGCGGGCA
GCAGCAGCAGCAGGCCGGAAACGGTACGCCACCACCAACGCGCGTATATC
GCCCTCCTGGAAGTTTCGATCTGGAGCCTGCTCGTGGCAACCGGGGTGGA
GGTGGAGGAGGCAGTGCGCGTCAACGGGAGGACCAACAAGTCTTTCGTTT
GCTTCGACTATTTGGGAATCCTAACGGAATGCTATTTGGTGCTGTTGCGC
TCGCTCTAGGTACGGTTGCTTTCGGGTGGGCATGGAAGAGTGGCTCGCTG
GAGAACTCGTCTCCGAGGATGCAGGACCCTGAGGCGACTGCTTACATGGC
CAGGAATGAGGGTTTCCCGCGGGACGTCGACGTAACGGTTACTGTGGATG
ATAAAGTCGTGACTTTGTCACAGGAGGGGGGAGAGGTCGACATTCTTTGA
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protein sequence of NO01G01030.1

>NO01G01030.1-protein ID=NO01G01030.1-protein|Name=NO01G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPPSRGVVVVLILCSLFSTTFVRAFHLPSSYSSSRTHLSLNPLSRAYNIK
NHRWRVSRSRQLHASPPAGDDSPSSKQEDDVDFFFADGFSSLLDDSTKST
SKHPKSPFEGGQTILLGSEDERSPVDELPRRGTTPPPPPISRRAMPFSSP
PSTGRSSGSSNDGGATRKKRPKRFSPPWQQEAAGGTGGGQQQQQAGNGTP
PPTRVYRPPGSFDLEPARGNRGGGGGGSARQREDQQVFRLLRLFGNPNGM
LFGAVALALGTVAFGWAWKSGSLENSSPRMQDPEATAYMARNEGFPRDVD
VTVTVDDKVVTLSQEGGEVDIL*
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Synonyms
Publications