NO01G01010, NO01G01010 (gene) Nannochloropsis oceanica

Overview
NameNO01G01010
Unique NameNO01G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1656
Alignment locationchr1:254990..256645 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:254990..256645 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO01G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008272NSK008272Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01010.1NO01G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627608gene_77Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01010.1NO01G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01010 ID=NO01G01010|Name=NO01G01010|organism=Nannochloropsis oceanica|type=gene|length=1656bp
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGGTCCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTAACTTGGAG
GATAAGGACTTTGAACGTCTCGCCAGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATGTGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTGACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
GAAAGAAAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTCCCCAGC
TTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATATTGCAG
GGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCCTGGCAG
GCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACTGCTATA
TGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGTTCGGGT
CAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTGCGGTGA
GGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTACCAGCTC
TGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGAGCCTTA
GCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGGGGAGGG
AGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAGCGGTGG
TAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGACTGGAT
TTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTCGAAGTT
ACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATCTTACGC
ACAATGCTGTGCGGGAGAAAGAGGCTTGGGAGTTGCAGCGTGCCATCCAC
TTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAAAGCCGG
TAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGGGAGAAA
ATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTACTGCCAG
GTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAGGGGGAG
AGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGTTGTCCG
TCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAAGACGAA
GAGTAG
back to top

protein sequence of NO01G01010.1

>NO01G01010.1-protein ID=NO01G01010.1-protein|Name=NO01G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MATPKDHEDRSCLLPLTILHQSRALATCLHANDLSHLSLSNRACRSFWPQ
VQSLHVPFFQYSLLSRHAVNKARTDGFRRACQEGQLKHLVNLSLNGANLE
DKDFERLASDILPYLPQLETLDVGNNPSLLSLGLNYLACSPNALPSNLRD
LRLAHNPNMCRGAYGGAHLGRLLIQLWPRLECLDLTQTGVTEDTLRIAVD
LLKCLTELREGGGGRERKERGNEDEAKGPRLPQLGVAGLRELRLGQNILQ
GRGSAQVLSAALECPGRPGTKQPLERLILDDCYMGDEGLAFFAEASLCSG
QFCSLRELHLQNNRCGEGGARALGKACVEGLPALEFLGLQMNMMGNVGAL
ALVEGMVGEEEDDGGEGGEGRDMARWEKMKEAVVKKEGDKRSLPRLKRLD
LSHNMIDALGVERFSKLLLGSGRCPSLEELDLTHNAVREKEAWELQRAIH
FCSSRSSTTISALTKAGSTTTITTVTTFFLQGENKETEVKVRLSPGLYCQ
VLLEGEEEEEEVGRRGRGDTGKSDALVYRLMLSVSDLVDFAFDLCVGEDE
E*
back to top
Synonyms
Publications