NO01G00990, NO01G00990 (gene) Nannochloropsis oceanica

Overview
NameNO01G00990
Unique NameNO01G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4736
Alignment locationchr1:250030..254765 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:250030..254765 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR000225Armadillo
Homology
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BLAST of NO01G00990 vs. NCBI_GenBank
Match: EWM29029.1 (hypothetical protein Naga_100071g20 [Nannochloropsis gaditana])

HSP 1 Score: 318.2 bits (814), Expect = 6.000e-83
Identity = 225/512 (43.95%), Postives = 305/512 (59.57%), Query Frame = 0 
Query:    1 MDALSDVLRIVHCMQSCRNIEEVQEKGCLEVSNLCADPTLRGILCQAGIFEALLDAIRSFPSNLKILYTGLQAIGTFSSGSDEARRSLCISGAGHVLIECLHRFAHDQSVLSSMWGSDVLPQCEIIRYLCIMSLTHLLHHKENLTPLREAGTWEIVVQTMAAFPEEDELNLGGCRILAILAEEL---GKSNKAEMDSTVQRTTACQVVMAVSGRVLHNLVAAAEGNLTLTPDLSEMLVRGAWLTCCTLAALASISQEDAAQLEAMGASQQVGRMMDVCREEIVQEWGARALAEVALSLRGVLGGLVGAGDRSVLVAQRLRVEQGVSGCPAVLNAMIHCPECSGVQFACCYALANLAGECLENQLLFCAGNAAQAVSRALDKFPYDPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMSGPCAVDPNVVEWACRALGDLASGNEENQVRIRLTGGCKQVVATL 510
            MD  + +++I+ CM    N+E+VQEKGC+E++ LC  P +R +LC+ G  +ALLDA+++FP ++ + Y G QA+   S   +E R  L +SGAG VL+E L RF+ + + L    GS  LP CE +R  C+ ++  LL  +EN+ PL  A  WE VV  MAAFPE+++L L GCR+L ++AE L   G +N   MD  ++++ ACQVV   S R L ++  AA   + L+P + + L++GAWLT   LAALAS+S E+A QL  +GA + +  +M +C  ++V EW  RALAE+ALSLRG  G   GA   S   A    ++   + C AV+ A+   P+   VQFA CYA+A LA +C ++QL F A +A                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                         G +GPC  D +V+EW+CRALGDLA+G  ENQ RIRL GGC +V+ TL
Sbjct:    1 MDEQAGLVKIIQCMNMYGNMEDVQEKGCVEINQLCDFPPIRELLCRVGAVQALLDALKTFPVSIGVQYAGCQALAKLSVDCNELRLHLGVSGAGTVLVEALARFSGEDANLQKSLGSQALPHCEGVRNFCLAAIFQLLQVEENMVPLLRANAWETVVNAMAAFPEDNDLTLSGCRLLIVMAEGLIKSGTANTKAMDVIMRQSPACQVVFRASTRALRHVENAAHQAVALSPLVQDFLLQGAWLTSSALAALASLSFENARQLVDLGACEHLRSLMRLCTNDVVVEWTVRALAEIALSLRG--GFSPGAKADSQEHAWHTGMKDSSTNCQAVVAAVSIAPQNQNVQFAGCYAVATLATDCRKHQLQFHASHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFLHLARVYFSACYVIVNLAQTNLEARKALGTAGACQQVVRGFAGPCGSDLDVLEWSCRALGDLANGCRENQERIRLEGGCTKVLETL 510
The following BLAST results are available for this feature:
BLAST of NO01G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29029.16.000e-8343.95hypothetical protein Naga_100071g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008275NSK008275Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00990.1NO01G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100071g20gene1587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00990.1NO01G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00990 ID=NO01G00990|Name=NO01G00990|organism=Nannochloropsis oceanica|type=gene|length=4736bp
ACAGGCGGTAAGGCCTAGCCCCCAGGCAGGCGTCGCCCGGTGCGGCCGAG
GCACAACACAAAAAGAAAGAGAAGAGCCCAATTTAAACCCAGTCAAAGCT
GAATTGACAAGCCTTTGGCACCTACCCTCCGACCCCCACCACCGCCTCCT
TCAGACCATGGACGCATTATCCGATGTGCTGAGGATCGTGCACTGTATGC
AGAGCTGCCGTAACATCGAAGAGGTTCAGGAAAAGGgtgaggctagtgta
ccctgtctagcggcttcgttaaccccccctccatttgcaggccccgaggc
tgtgtgtacaaatcgcgtgctgtcttgtatgtatccctcccctcaagtac
aagggacgtacacatatatccgaaatactgcttcctcatttccctcccca
catgtgtgcgtaagttccctgcaaccccccgcttcccaacccaccaaccc
ttgcttgtgtctatttttgtaaccaacacacctcctcccatcctcctttt
cgaaattagGCTGCCTCGAAGTTAGCAACCTCTGCGCCGACCCTACCCTC
CGGGGAATCCTCTGCCAAGCGGGGATCTTTGAAGCTTTGCTCGACGCCAT
CCGCTCCTTCCCCTCCAACTTAAAAATCCTTTACACGGGCTTGCAAGCCA
TTGGCACCTTCTCCTCCGGCAGCGATGAAGCCCGCCGTAGCCTTTGCATC
TCCGGGGCTGGACATGTCTTGATCGAATGCCTCCACCGTTTCGCGCACGA
CCAGAGCGTGCTCTCCTCCATGTGGGGAAGCGACGTGCTTCCACAATGCG
AGATTATTCGGTACCTGTGCATCATGTCCCTCACCCATCTCCTCCACCAC
AAAGAAAACTTGACTCCCCTGCGCGAGGCCGGGACCTGGGAGATCGTCGT
CCAAACTATGGCTGCATTCCCGGAGGAAGACGAGTTGAACCTCGGGGGAT
GTCGCATCCTGGCGATTCTAGCTGAAGAACTTGGTAAATCCAATAAGGCT
GAAATGGATTCAACCGTGCAACGAACCACTGCCTGTCAAGTAGTCATGGC
AGTCTCTGGACGAGTGCTTCACAATTTGGTGGCAGCGGCGGAGGGAAATT
TGACACTGACGCCTGATTTGTCGGAGATGTTGGTAAGGGGGGCATGGTTG
ACGTGCTGTACCTTGGCGGCGCTTGCAAGTATTTCGCAGGAGGACGCGGC
ACAGCTTGAGGCAATGGGGGCCAGTCAGCAGGTGGGGCGGATGATGGACG
TGTGCAGGGAAGAAATAGTGCAAGAATGGGGTGCTCGGGCTTTGGCGGAG
GTGGCGCTTTCGCTTCGGGGAGTGCTGGGAGGGCTGGTAGGGGCAGGGGA
TAGGAGTGTGCTAGTCGCGCAGCGGTTGAGGGTGGAGCAGGGGGTAAGTG
GTTGCCCGGCAGTTTTGAATGCAATGATACACTGTCCTGAGTGCAGTGGG
GTGCAATTTGCATGTTGTTACGCCCTGGCGAATTTAGCAGGGGAATGCCT
TGAAAACCAATTATTGTTCTGTGCAGGCAACGCCGCGCAGGCCGTCTCTC
GTGCCCTTGATAAGTTTCCTTATGACCCGAAAATCCAAGAATGGGGCGCA
CGGGCTTATGCTGACTTGATGAAGGATTGTAATCAGAACCAAATGGCGGT
CATGGACGCGGGGGGTTGTAGTACGTTGGTGCAGACTTTAGCTTCCTTTC
CCAATGTGCCCACAGTGCAATTTGCGGCTTGCTATGCGATTGTGAATCTG
GCAAGTAGCGACGTGCGTGCACGGATCAAGTTGGGAAATGCGGGGGCGTG
CCGTCACATCCTAAAGGGGATGTCGGGGCCCTGTGCGGTAGACCCGAATG
TGGTCGAGTGGGCATGTCGTGCCTTGGGAGATCTCGCGAGTGGAAACGAG
GAGAATCAGGTTAGGATACGATTGACGGGGGGATGCAAGCAGGTAGTCGC
GACCTTGGGTCAGCATTCCCAGAACGCTCGCGTCCAATTTGCCGGGTGCT
ATGCACTGACGCACTTGGTGGCAGGGAATAAAATGAATCAGCTGCATGTT
GCGGAGGCTGGGGGGTGTGAGGCGATTGTGCGAGCGATCCTGGACTTCGA
CGAGGGGAGTAGTATAAGGACGTGGGGTTTCAGAGCATTGGTGGCGATGG
CGGCCACAGTGTCGTGTGCAGACGGCTTGGCGGAGGTCGGGACGTTGTTT
GAGATGGTCAAAGTCATGAAAATGAAGGAGAGGGAGGAGGGAAAGGCGGA
AGGGGCGGGGGAGAGCGGGGAGAAGTTGAAGGAAGGAAAGATAGAGAGAG
CAATGGCGGCCGTACACGGGGCGGGAACGAGGGGGCCACAGTAGCCGGTG
GACAATAGGGAGAAGCAGGAGCAGGAGGAGGAAACTGTACATACGCACTG
TGCGTGAATGCAAGAAGAAGAATAAAAACAAGAGAGAAAAAGCATATTTT
GATTGCATGTGATTCAGTGGCGTTGTTGCGATGCAGTTGTGCTTCTTCAT
GCGATTCACCGTTGAGTTTGCACGGAGTGTGTGATCTTATGATTTAGGTC
CTGGGCTGCAGCCGTCATAGGCTTGAGCCTAGGCAATAATAGATAGACCA
GAGGACCACCGTTACAGACGATAGCACAATCAAATGAAATACAAAGAGAA
CTAAATAATCGCAAGGTATTCTTCATAATGGTATATTGTTCTTTCTTTTG
CCTTTCCCTTGCCAATTTTCCTGCTTTCTTCCCGCAAAGCACTAAAAAAC
AATCCCTTTATACACACACGCGAATCTCCTACTTCAACCATTTCTCTTTC
TTCCTACCCCATGATTCCCATTTTCAATTCCTGTTTCCTTTTTTCATTAT
TTTTCAATTTTCTCTTGCCCTACTGGCAGATACAGTCGTCGCTTTCCCCC
CTCTTTTTCTGCAGCTGCTGCTGCTGCTGCTGCTACTACTCCTTCTGTTC
CAGTAAAAATAATCACAAACCGACCTAAGCTTCTACTGGGTGCTCCTAAT
GGCTATTATTCTTACCGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTAGCGCTATTCCCCTTCTGGTTATC
CACCAGCACCAGCTCCCGCTGTCCATCCGCCGGTCGAAAAGTGTAATAAA
TGCGGCGTAGTGCCTCCTTGTACTCCACAACCACTGCCTCAATCTCCTCC
TCCGTTGGCTCATACTTCTCTCCCTCCATGCCTACCTTCTTCGCCCTTCC
ATCCTCCGTCCCCGGAATCTTCCCATTCCCACTGTTGTTTTTGCAGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCAGTGGCGTCGCCGCACCTGAATCGGC
CTCCCCACAACCGAGAACATCTTGACCTTATGAGGGACAAATAATCCCCA
TCGTCCGATCAAAAAGCAGCCAGGCAACCCACTCTTCCGACACACGGTTG
CCAACAGTTCATTGAGCGAAGGAGGAAGGATGTAGCTGAACGTCTGCGTG
TGGTTAAAGTGATACATCGGGATGATATCCACACGGTTCTTCAACGCTTC
GCGTATGAAACCCCGTCGAATCAGGACCTTCTCCGTCTCGTTTGATGGAT
CCAGCATGAACATTTCTGCGATTCCTCCCGGTAGAATACAACATACGTCT
CCCTGCTCCACCACCTTCATGATCCCTGCCGCCGATATCGGTCGCCCCCC
CAGTGTCTCCAGCCATTGCCACAAAAAAGGCTGCAACTGCAACGCCGACG
CCGCCATACAATATGAATCGCGGCCTCGGAAGAGACTGGGGCTGAAGGGA
GCGGCACAGACGCTTGCAATGGGATAAATGCCGTGCGGGCTCTGCACACC
GATGTAGGGAGTGGAGGGCTGGATGGAGGAAGGATCTTCGACAATGACAA
AATAGTTGAAGTACCGCACCATGGCCCGCAGGAACCAGGTAGAGAGGCAG
GGAGGACTAAGGCGTTCCCGGCGAGGGACGAGGTCGAAGTATAGCAGGAC
CCAGTAGAAGGAGAATGCGGAGAGGTAGCTAGTGCTGGCCCTCACCCACC
CGAAAAATGGCACAAACGATAGGCCAAGCATCATAAATGAAAAGATGGGG
GCACACAGCACAACGAAGCAGGGGAGGAGCAGTGCTTCTTCCCACCAAGG
CAAGGTTAGGCGAGTGCCGGGGCAGACGTCGCCAAGGGTGAGCGTGAGAG
CTTTGGAGGTGGTCTGGGGGGAAGTCGGGGGGCTCTCGTCGGTGCTGCTC
CCCATCGATTCGGTCTTGCTGTCGACGTTGCTGTCACTGCTACTGCTGGC
GTTGATGCTACTGCTGCTGCTGTCAAGGCGCAGGCCATCGCACAGGATGG
TGGCCGTGGTGCCTGCTGCGGTGGGAGGTGCAGCGGCAGTACGTTTAGGA
GTCCTGGAGCGACGAGGCCAACGCAAGAAGGAGGACATCGTATATTTAAA
GAGAATGTGCGTATAGAGTGCAGCGGCAACACAAAAAGGCGCGACGCGCT
TGCTGTGTTAGGTGTAGGGGGAACGGGTGTTCAAATGAGCTGAGGAACGA
AGAAAGGAGGCATGACGAGACCAGCCACGCACTCCACATCGCCTGCTCAT
CGCCGATGGCGAGGCAGGAATAACATGGGACAGTAGACAATTTCCCTGTA
CTTTCGTACTATTGTGTGGGTGGTTGAGAGAAGAAACCGCAGAAATTGTC
CCCTTGGACACAAAGTGACAGGGTGATTGAAGGCGG
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protein sequence of NO01G00990.1

>NO01G00990.1-protein ID=NO01G00990.1-protein|Name=NO01G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MDALSDVLRIVHCMQSCRNIEEVQEKGCLEVSNLCADPTLRGILCQAGIF
EALLDAIRSFPSNLKILYTGLQAIGTFSSGSDEARRSLCISGAGHVLIEC
LHRFAHDQSVLSSMWGSDVLPQCEIIRYLCIMSLTHLLHHKENLTPLREA
GTWEIVVQTMAAFPEEDELNLGGCRILAILAEELGKSNKAEMDSTVQRTT
ACQVVMAVSGRVLHNLVAAAEGNLTLTPDLSEMLVRGAWLTCCTLAALAS
ISQEDAAQLEAMGASQQVGRMMDVCREEIVQEWGARALAEVALSLRGVLG
GLVGAGDRSVLVAQRLRVEQGVSGCPAVLNAMIHCPECSGVQFACCYALA
NLAGECLENQLLFCAGNAAQAVSRALDKFPYDPKIQEWGARAYADLMKDC
NQNQMAVMDAGGCSTLVQTLASFPNVPTVQFAACYAIVNLASSDVRARIK
LGNAGACRHILKGMSGPCAVDPNVVEWACRALGDLASGNEENQVRIRLTG
GCKQVVATLGQHSQNARVQFAGCYALTHLVAGNKMNQLHVAEAGGCEAIV
RAILDFDEGSSIRTWGFRALVAMAATVSCADGLAEVGTLFEMVKVMKMKE
REEGKAEGAGESGEKLKEGKIERAMAAVHGAGTRGPQ*
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Synonyms
Publications