NO01G00950, NO01G00950 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00950
Unique Name	NO01G00950
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2540
Alignment location	chr1:239955..242494 -

Link to JBrowse

Properties


Property Name	Value
Description	ARF GAP-like zinc finger-containing protein ZIGA4

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:239955..242494 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005096	GTPase activator activity
GO:0046872	metal ion binding
GO:0005096	GTPase activator activity

Vocabulary: **INTERPRO**
Term	Definition
IPR037278	ARFGAP/RecO
IPR001164	ArfGAP

Vocabulary: **Biological Process**
Term	Definition
GO:0043547	positive regulation of GTPase activity

Homology

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: CBN78382.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.8 bits (351), Expect = 3.000e-29
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 0

Query:    7 RKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDP-RDYAEPEAGQEQRIRDWIRQKYIEKRWH 125
            R E +L   ++   K P NKRCADCTE+LPQ++   F+TF+CTACSGIHREFSHRVKSISL+TF+ +EV A+K GGNE    LY+A + P  D  EPE G+  + R++IR KY++KRW+
Sbjct:   11 RLERKLQVQLRACQKEPGNKRCADCTERLPQWIISDFNTFVCTACSGIHREFSHRVKSISLATFSEEEVAAVKAGGNETSNKLYMARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWY 129

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: OLP82462.1 (putative ADP-ribosylation factor GTPase-activating protein AGD14 [Symbiodinium microadriaticum])

HSP 1 Score: 137.1 bits (344), Expect = 1.900e-28
Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 0

Query:    1 MAGLDKRKEERLIKAVKDLSKL-PPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHS 128
            MAG+ K  E+ L+  ++   +    NK+CADCTE  P YV L+F+TF+CT C G+HREFSH+VK IS+S +T++EV+ ++ GGN   A  +LA WDPRD+ EP++  + + RD+I+ KYIEKRW A +
Sbjct:    1 MAGVKKVSEKNLLDRIRAFQRSDKANKKCADCTEVGPTYVCLSFATFVCTTCGGLHREFSHKVKGISVSKWTVEEVEDIERGGNAKDAEKFLASWDPRDFQEPDSTDQAKCRDFIKMKYIEKRWVARN 128

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_011026534.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Populus euphratica])

HSP 1 Score: 134.4 bits (337), Expect = 1.200e-27
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 0

Query:    7 RKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHST 129
            ++EER+ K ++ L KLP N+RC +C    PQYV  TF TF+CT+CSGIHREF+HRVKS+S++ F  +EV AL+ GGNE    +YL HWDP+    P+    Q++RD+I+  Y+++R++   +
Sbjct:    6 KEEERIEKIIRGLLKLPENRRCINCNSLGPQYVCTTFFTFVCTSCSGIHREFTHRVKSVSMAKFNAEEVSALQAGGNERARQIYLKHWDPQRNQLPDGSNLQKLRDFIKHVYMDRRYNGEKS 127

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_011026535.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Populus euphratica])

HSP 1 Score: 134.4 bits (337), Expect = 1.200e-27
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 0

Query:    7 RKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHST 129
            ++EER+ K ++ L KLP N+RC +C    PQYV  TF TF+CT+CSGIHREF+HRVKS+S++ F  +EV AL+ GGNE    +YL HWDP+    P+    Q++RD+I+  Y+++R++   +
Sbjct:    6 KEEERIEKIIRGLLKLPENRRCINCNSLGPQYVCTTFFTFVCTSCSGIHREFTHRVKSVSMAKFNAEEVSALQAGGNERARQIYLKHWDPQRNQLPDGSNLQKLRDFIKHVYMDRRYNGEKS 127

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_011026537.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X3 [Populus euphratica])

HSP 1 Score: 134.4 bits (337), Expect = 1.200e-27
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 0

Query:    7 RKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHST 129
            ++EER+ K ++ L KLP N+RC +C    PQYV  TF TF+CT+CSGIHREF+HRVKS+S++ F  +EV AL+ GGNE    +YL HWDP+    P+    Q++RD+I+  Y+++R++   +
Sbjct:    6 KEEERIEKIIRGLLKLPENRRCINCNSLGPQYVCTTFFTFVCTSCSGIHREFTHRVKSVSMAKFNAEEVSALQAGGNERARQIYLKHWDPQRNQLPDGSNLQKLRDFIKHVYMDRRYNGEKS 127

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: KFH73264.1 (hypothetical protein MVEG_00482 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 133.7 bits (335), Expect = 2.100e-27
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 0

Query:    4 LDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWH 125
            + KR+EER  + +  L KLP NK+C DC  K+  YVNL  STFIC  CSG+HREF+HRVKSIS STFT +EV +L+ GGN A   ++LA W  R+Y EP+A +   ++ ++R KY++K W+
Sbjct:    1 MSKRQEERHARILTSLLKLPENKKCFDCPSKVNVYVNLFNSTFICEKCSGLHREFNHRVKSISASTFTSEEVASLQKGGNAAAKKIWLATWSWREYPEPDAHEVDELKQFMRAKYVKKLWY 121

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_004498622.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Cicer arietinum] >XP_004498623.1 PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Cicer arietinum])

HSP 1 Score: 133.3 bits (334), Expect = 2.800e-27
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 0

Query:    3 GLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRW 124
            G  K++EER+ + ++ L KLP N+RC +C    PQYV  TFSTF+CT CSGIHREF+HRVKS+S++ FT +EV A++ GGNE    +Y   WDP  ++ P++G   R+RD+I+  Y+++++
Sbjct:    2 GHSKKEEERVERIIRGLLKLPENRRCINCNTLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTAIQAGGNERAKQIYFKGWDPLCHSYPDSGNMHRLRDFIKHVYVDRKY 122

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: KYP39252.1 (putative ADP-ribosylation factor GTPase-activating protein AGD14 [Cajanus cajan])

HSP 1 Score: 133.3 bits (334), Expect = 2.800e-27
Identity = 60/125 (48.00%), Postives = 87/125 (69.60%), Query Frame = 0

Query:    3 GLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHS 128
            G  K +EER+ + ++ L KLP N+RC +C    PQYV  TFSTF+CT CSGIHREF+HRVKS+S++ FT +EV AL+ GGNE    +Y   WDP  ++ P++    R+RD+I++ Y+E+++   S
Sbjct:    2 GNRKTEEERIERVIRGLLKLPDNRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQSGGNERAKQIYFKEWDPLRHSYPDSSNMHRLRDFIKRVYVERKFCGES 126

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_014624960.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Glycine max] >KRH05035.1 hypothetical protein GLYMA_17G203600 [Glycine max])

HSP 1 Score: 132.9 bits (333), Expect = 3.600e-27
Identity = 59/121 (48.76%), Postives = 86/121 (71.07%), Query Frame = 0

Query:    3 GLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRW 124
            G  K +EER+ + ++ L KLP N+RC +C    PQYV  TFSTF+CT CSGIHREF+HRVKS+S++ F+ +EV AL+ GGNE    +Y   W+P  ++ PE+G   ++RD+I+  Y+E+R+
Sbjct:    2 GNRKTEEERIERVIRSLLKLPENRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFSPEEVTALQAGGNERAKQIYFKEWNPLRHSHPESGNIHKLRDFIKHVYVERRY 122

[Close]

BLAST of NO01G00950 vs. NCBI_GenBank
Match: XP_020965643.1 (uncharacterized protein LOC107614533 isoform X3 [Arachis ipaensis])

HSP 1 Score: 132.5 bits (332), Expect = 4.700e-27
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 0

Query:    3 GLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRW 124
            G  K+ E ++ K ++ L KLP N+RC +C    PQYV  TF TF+CT CSGIHREF+HRVKS+S++ FTL+EV+A++ GGNE    +Y   WDP+ ++ PE+   QR+R++I+  Y+E+++
Sbjct:    2 GNSKKDEAKIEKIIRGLLKLPENRRCINCNLLGPQYVCTTFCTFVCTNCSGIHREFTHRVKSVSMAKFTLEEVEAIQAGGNERAKEIYFKCWDPQRHSYPESNNMQRLREFIKNVYVERKF 122

The following BLAST results are available for this feature:

BLAST of NO01G00950 vs. NCBI_GenBank

BLAST of NO01G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
CBN78382.1	3.000e-29	56.30	conserved unknown protein [Ectocarpus siliculosus]	[more]
OLP82462.1	1.900e-28	49.22	putative ADP-ribosylation factor GTPase-activating...	[more]
XP_011026534.1	1.200e-27	47.54	PREDICTED: probable ADP-ribosylation factor GTPase...	[more]
XP_011026535.1	1.200e-27	47.54	PREDICTED: probable ADP-ribosylation factor GTPase...	[more]
XP_011026537.1	1.200e-27	47.54	PREDICTED: probable ADP-ribosylation factor GTPase...	[more]
KFH73264.1	2.100e-27	51.24	hypothetical protein MVEG_00482 [Mortierella verti...	[more]
XP_004498622.1	2.800e-27	47.93	PREDICTED: probable ADP-ribosylation factor GTPase...	[more]
KYP39252.1	2.800e-27	48.00	putative ADP-ribosylation factor GTPase-activating...	[more]
XP_014624960.1	3.600e-27	48.76	PREDICTED: probable ADP-ribosylation factor GTPase...	[more]
XP_020965643.1	4.700e-27	47.93	uncharacterized protein LOC107614533 isoform X3 [A...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL006	nonsL006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008282	NSK008282	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G00950.1	NO01G00950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627602	gene_70	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100071g23	gene1590	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G00950.1	NO01G00950.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G00950 ID=NO01G00950|Name=NO01G00950|organism=Nannochloropsis oceanica|type=gene|length=2540bp
AGCGAACGTTGCCTTCCCCTTCGAAATTCGGAGGCCCGCGAGTCTTGCAT
GCCGACCCTGAACATCACCGACCATGCTCCGCATTACACCTATGCACAGC
CAACACGCGTTGATCTGTCATGTTTGGTGCTTGTGGCATGCTTTCTGGTT
CTGGCCACCGTGGTTTTGGTCACACAATTCCGTATGTACGCGCCATCGTC
ATTTCCTTCCCAACGGCACATCTCAATTCCCTTGCCTTTAGACACGTGAT
CCCAGTACAGGAGTATCAGCAATAAGCCTCATTGTGTACACACACACGAC
ATTAACAAGGAAAATTTCCACTCACTCTTCTTCAGCAGGCGGGATGGCGG
GGTTGGACAAGCGAAAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTG
AGCAAACTCCCTCCCAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCC
GCAGTACGTAAACCTCACGTTCAGCACCTTCATTTGCACAGgtacaggat
ttcggggatgggcggtagtttgggatgtgggtgggcgcgatggctgcgta
ttcacttgcgctccgctggtgccttcgtcatgtacgcttgcttacttggg
ataaggcgtgccttcttattattttgtttgcgtgcgcgcgcgcagaaatg
gcctctaaggcagttgcatccgcccttgcggttcatctccccattcaccc
ctccctatcttcacctacagCGTGCTCGGGCATCCATCGCGAGTTCTCTC
ACCGTGTTAAGAGTATCTCCCTCTCCACCTTCACCCTCGATGAGGTCAAG
GCCTTAAAAGACGGAGGAAACGAAGCTTGCGCCGCTCTCTATCTTGCCCA
TTGGGACCCGAGAGATTATGCAGAGCCGGAAGCAGGGCAAGAACAACGAA
TCCGTGACTGGATCAGGCAGAAGTACATTGAGAAAAGGTGGCATGCTCAT
AGTACCTACCATCCCGGAGGAGGAAAGGGCGGGGACGGAAGGGGGAGGAC
GACCTTAGGTGGCAGCGCCGGGGGTGGAGTGGGGAGGGTGGGGGGGGGAG
GAGGAGGGAGAGAGGGAGGGAGGGAGGAGATGTATGACCCACACCCGACG
TCGTTGAGTCGGAGGCAGCAATCTGCGTCCTCTTCCTTGTCGTCGACAAG
GGCGACGGGAGGAGAAAAAGGAACAGGAGGAGCATCGACCAGTCACCCAG
ATGATCGAGAAGTAGAGGAAGGGAGGGAGGGGGGGCTGGGTCGGAGTAGA
AGGAAGCAGCAGCAGGGGATGGACTTGTTGGATTTGGTGTTTGCGCCTGG
CTCGCCAGAACGCAAGCAGCAGCCGCAGCAGAAGAAGGAGGAGACAACAG
GGGCTTTTGCGTCTGATCCCTTTGCAAGCTCTTCAGGATGGGCGGGGAGT
ACAGGGGGGGGACAATCCGCCATCAGCTTCAACAATACACCACCCCCGCC
GCAGCAGCCTCCCCTCCCTCCCCACCTCCAACAGCATCCCTCCTCCTCTT
CATCGCAATTTGGCGCCGACTTCTTTTCTGCCCCTCAATTTCCCTCTCCT
CCCCAGCCGCAACCTTCCACCTTTTACCCTTCCCCACCTCCTCCGCCTCC
GCAGCAGCAGCAGCAGCAGTACCAGCAGCAGAGGCAGCCGCAGCCGGTTT
ACGGTGACATGCCTACTCCTCCCCCGGCACCTTTAACCCTCCCTCAGCAA
GTAGGGGAAGGATTTCAAGGCTACCCCTCCGTCACTGCCCCCCCGCCGGC
CCCGCCTCCTCCTCCCCAACAGCAGCAGCAACAACAACAACCAGCCTATG
CTGGCGGCTGGCCCCGGCAACAGCAGCACCAGCAGCAACAACAAGGACAG
CAGCAGCCTCCGTTCCCACAGCAGCAGCAACAACAGCCTACCCCCCCGCG
ATCCTTCCCCTCCTCTTACCCCCCTAAACTCCCTCCCGGCATGGTCCGCT
TCACCCCTCCCTCCCCCCCTCCCTCCCGTTCCCCCATCCAAACCCTCTCC
ATCGAAGATGCCTTTGGGAACCTGGACATATCCACCAGCGGCACTACCAC
CCTACCTTTCCCCCCCACACACACCTCCGCCCATCCCCAGCCCCCCATCG
CCCCCTCCCTTCCTACCTTCCAGACGGGTGAAGCTGTGATTTACACGGAC
TCCCAAGGCAAAAAAACCCGGACGGTAATCAAAGAAGTCCACATGGATGA
TTACCCTCCTTACTACACTATCACACTCGCCAACGGCTCAGAGCGACAGA
CGGATTTCCACCATGTTTCCAAAATTCATGCTCCTCTTCCTCCTGCCCCC
GCTCCTCCTCGCGCAACTGCCACTCCCGCCACGCAGCAGCAGCAGCAGCA
GCCGCCGCCTTGGGAGAAACAGCAAGCGGCGGTGCCGGCGTCGGGATCAC
ACCTGCAACAACAATTGCAGCCGCAGCAGCACAATCCGTTTTTGGCTTCT
GCCGTTCCTCCTGGTGCTGCTCCTTTTCCTCCCCCTCCTCCACCGGCAAG
TGGGAATCCGTTCGATATGTTTTAGAGGAGGGGAGATAAA

protein sequence of NO01G00950.1

>NO01G00950.1-protein ID=NO01G00950.1-protein|Name=NO01G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MAGLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTA
CSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYA
EPEAGQEQRIRDWIRQKYIEKRWHAHSTYHPGGGKGGDGRGRTTLGGSAG
GGVGRVGGGGGGREGGREEMYDPHPTSLSRRQQSASSSLSSTRATGGEKG
TGGASTSHPDDREVEEGREGGLGRSRRKQQQGMDLLDLVFAPGSPERKQQ
PQQKKEETTGAFASDPFASSSGWAGSTGGGQSAISFNNTPPPPQQPPLPP
HLQQHPSSSSSQFGADFFSAPQFPSPPQPQPSTFYPSPPPPPPQQQQQQY
QQQRQPQPVYGDMPTPPPAPLTLPQQVGEGFQGYPSVTAPPPAPPPPPQQ
QQQQQQPAYAGGWPRQQQHQQQQQGQQQPPFPQQQQQQPTPPRSFPSSYP
PKLPPGMVRFTPPSPPPSRSPIQTLSIEDAFGNLDISTSGTTTLPFPPTH
TSAHPQPPIAPSLPTFQTGEAVIYTDSQGKKTRTVIKEVHMDDYPPYYTI
TLANGSERQTDFHHVSKIHAPLPPAPAPPRATATPATQQQQQQPPPWEKQ
QAAVPASGSHLQQQLQPQQHNPFLASAVPPGAAPFPPPPPPASGNPFDMF
*

Synonyms

Publications