NO01G00940, NO01G00940 (gene) Nannochloropsis oceanica

Overview
NameNO01G00940
Unique NameNO01G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2282
Alignment locationchr1:237330..239611 +

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme E2 15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:237330..239611 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Homology
BLAST of NO01G00940 vs. NCBI_GenBank
Match: OWZ21237.1 (Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 271.9 bits (694), Expect = 1.300e-69
Identity = 126/166 (75.90%), Postives = 146/166 (87.95%), Query Frame = 0
Query:    2 SDYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            +DYA ELLRRQ  E+++NPPEGVSVGL DD ++F WE+LLVGP DTLYEGGFFKA L FP DFPNMPP MTF++EMWHPNVY  G VCISILHPPGED+ N QETADERWRPILGVE+I+VSVISMLSDPND+SPANIDAAV++R+D+ GFKK  R +VRKSQE++
Sbjct:    5 TDYAKELLRRQFLEMSRNPPEGVSVGLGDDENIFNWEILLVGPPDTLYEGGFFKAVLEFPADFPNMPPKMTFKSEMWHPNVYPSGVVCISILHPPGEDQLNAQETADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRSDKEGFKKHCRRIVRKSQEDI 170          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: XP_012198431.1 (hypothetical protein SPRG_04632 [Saprolegnia parasitica CBS 223.65] >KDO30731.1 hypothetical protein SPRG_04632 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 270.0 bits (689), Expect = 4.900e-69
Identity = 125/165 (75.76%), Postives = 145/165 (87.88%), Query Frame = 0
Query:    3 DYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            DY  ELLRRQL EL++NPPEGVSVGL DD ++F WE++LVGP DTLYEGGFF+ARL FP DFPNMPP MTF ++MWHPNVY  G VCISILHPPGED+ N QE+ADERWRPILGVE+I+VSVISMLSDPND+SPANIDAAV++RND+  FKKR R +VRKSQE++
Sbjct:    2 DYGRELLRRQLTELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTLYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPNVYPSGVVCISILHPPGEDQMNAQESADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRNDKDAFKKRCRRIVRKSQEDI 166          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: XP_008607873.1 (ubiquitin-conjugating enzyme E2 G1 [Saprolegnia diclina VS20] >XP_008607874.1 ubiquitin-conjugating enzyme E2 G1, variant [Saprolegnia diclina VS20] >EQC38281.1 ubiquitin-conjugating enzyme E2 G1 [Saprolegnia diclina VS20] >EQC38282.1 ubiquitin-conjugating enzyme E2 G1, variant [Saprolegnia diclina VS20])

HSP 1 Score: 268.9 bits (686), Expect = 1.100e-68
Identity = 124/165 (75.15%), Postives = 145/165 (87.88%), Query Frame = 0
Query:    3 DYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            DY  ELLRRQL EL++NPPEGVSVGL DD ++F WE++LVGP DTLYEGGFF+ARL FP DFPNMPP MTF ++MWHPNVY  G VCISILHPPGED+ N QE+ADERWRPILGVE+I+VSVISMLSDPND+SPANIDAAV++RND+  FKKR R +VRKSQ+++
Sbjct:    2 DYGRELLRRQLTELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTLYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPNVYPSGVVCISILHPPGEDQMNAQESADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRNDKDAFKKRCRRIVRKSQDDI 166          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: XP_009824462.1 (hypothetical protein H257_02490 [Aphanomyces astaci] >ETV85990.1 hypothetical protein H257_02490 [Aphanomyces astaci])

HSP 1 Score: 268.9 bits (686), Expect = 1.100e-68
Identity = 126/164 (76.83%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    3 DYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEE 166
            DY  ELLRRQ  EL++NPPEGVSVGL DD +LF WE++LVGP DTLYEG FFKARL FP DFPNMPP MTF +EMWHPNVY +G VCISILHPPGEDR N QE+ADERWRPILGVEAI+VSVISMLSDPNDESPAN+DAAV++R ++ GFKK  R +VRKSQE+
Sbjct:    2 DYGRELLRRQFTELSRNPPEGVSVGLGDDENLFNWEIMLVGPPDTLYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPNVYSNGVVCISILHPPGEDRMNAQESADERWRPILGVEAILVSVISMLSDPNDESPANLDAAVEWRTNKDGFKKHCRRIVRKSQED 165          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: XP_008863935.1 (hypothetical protein H310_02264 [Aphanomyces invadans] >ETW07842.1 hypothetical protein H310_02264 [Aphanomyces invadans])

HSP 1 Score: 266.9 bits (681), Expect = 4.100e-68
Identity = 125/165 (75.76%), Postives = 142/165 (86.06%), Query Frame = 0
Query:    3 DYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            DY  ELLRRQ  EL++NPPEGVSVGL DD +LF WE++LVGP DTLYEG FFKARL FP DFPNMPP MTF +EMWHPNVY +G VCISILHPPGEDR N QE+ADERWRPILGVEAI+VSVISMLSDPND+SPANIDAAV++R ++  FKK  R +VRKSQE++
Sbjct:    2 DYGRELLRRQFTELSRNPPEGVSVGLGDDENLFNWEIMLVGPPDTLYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPNVYPNGVVCISILHPPGEDRMNAQESADERWRPILGVEAILVSVISMLSDPNDDSPANIDAAVEWRTNKEAFKKHCRRIVRKSQEDI 166          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: XP_024575030.1 (drug metabolite transporter superfamily [Plasmopara halstedii] >CEG38661.1 drug metabolite transporter superfamily [Plasmopara halstedii])

HSP 1 Score: 266.9 bits (681), Expect = 4.100e-68
Identity = 123/166 (74.10%), Postives = 144/166 (86.75%), Query Frame = 0
Query:    2 SDYATELLRRQLHELNKNPPEGVSVGL-VDDSLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            +DYA ELLRRQ  E+++NPPEGVSVGL  DD++F W++LLVGP DT YEGGFFKA L FP DFPNMPP MTF++EMWHPNVY +G VCISILHPPGED  N QETADERWRPILGVE+I+VSVISMLSDPN +SPANIDAAV++R+D+ GFKK  R +VRKSQE++
Sbjct:  358 TDYAKELLRRQFLEMSRNPPEGVSVGLGGDDNIFNWDILLVGPPDTFYEGGFFKATLEFPIDFPNMPPKMTFKSEMWHPNVYPNGVVCISILHPPGEDHLNQQETADERWRPILGVESILVSVISMLSDPNYDSPANIDAAVEWRSDKEGFKKHCRRIVRKSQEDI 523          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: CCI40830.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 266.2 bits (679), Expect = 7.000e-68
Identity = 124/164 (75.61%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    2 SDYATELLRRQLHELNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQE 165
            +DYA ELLRRQ  E+++NPPEGVSVGL DD ++F+WE+LLVGP DTLYEGGFFKA L FP +FPNMPP MTF +EMWHPNVY +G VCISILHPPGED  N QETADERWRPILGVE+I+VSVISMLSDPNDESPANIDAAV++RND+  FKK  R + RKSQ+
Sbjct:    5 TDYARELLRRQFLEMSRNPPEGVSVGLGDDENIFKWEILLVGPPDTLYEGGFFKALLEFPLNFPNMPPKMTFVSEMWHPNVYPNGVVCISILHPPGEDHLNQQETADERWRPILGVESILVSVISMLSDPNDESPANIDAAVEWRNDKEAFKKHCRRIARKSQD 168          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: AFO84292.1 (ubiquitin conjugative enzyme [Ditylum brightwellii])

HSP 1 Score: 263.1 bits (671), Expect = 6.000e-67
Identity = 125/165 (75.76%), Postives = 144/165 (87.27%), Query Frame = 0
Query:    1 MSDYATELLRRQLHELNKNPPEGVSVGLVDDS-LFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQE 165
            M+DY TELL+RQL EL KNP + VSVGL DDS +++WE+L++GP  TLYEGGFF+ARL FP DFPNMPPTMTF +    PNVY+DG+VCISILHPPGED  N QE+ADERWRPILGVEAI++SVISMLSDPNDESPAN+DAAVQ+RNDR GFKK+VR VVRKSQE
Sbjct:    1 MTDYGTELLKRQLAELAKNPIDLVSVGLTDDSNVYDWEILIMGPDGTLYEGGFFRARLVFPPDFPNMPPTMTFISRCGTPNVYQDGKVCISILHPPGEDAMNSQESADERWRPILGVEAILMSVISMLSDPNDESPANLDAAVQWRNDRQGFKKKVRQVVRKSQE 165          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: OEU15518.1 (ubiquitin-conjugating enzyme protein E2 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 261.5 bits (667), Expect = 1.700e-66
Identity = 127/168 (75.60%), Postives = 143/168 (85.12%), Query Frame = 0
Query:    1 MSD--YATELLRRQLHELNKNPPEGVSVGLVDDS-LFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEE 166
            MSD    TELLRRQL +L KNP + VSVGL DDS L++WE+L++GP  TLYEGGFFKARL FP+DFPNMPPTMTF +EMWHPNVY DG+VCISILHPPG D  N QE A ERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVQ+RND  G+KK+VR +VRKSQEE
Sbjct:    1 MSDLGMGTELLRRQLADLAKNPIDLVSVGLADDSNLYDWEILVMGPDGTLYEGGFFKARLVFPSDFPNMPPTMTFVSEMWHPNVYADGKVCISILHPPGTDEMNSQELAIERWRPILGVEQILVSVISMLSDPNDESPANLDAAVQWRNDIKGYKKKVRQIVRKSQEE 168          
BLAST of NO01G00940 vs. NCBI_GenBank
Match: KUF96828.1 (Diacylglycerol O-acyltransferase 2 [Phytophthora nicotianae])

HSP 1 Score: 255.8 bits (652), Expect = 9.500e-65
Identity = 117/152 (76.97%), Postives = 137/152 (90.13%), Query Frame = 0
Query:   16 LNKNPPEGVSVGLVDD-SLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            +++NPPEGVSVGL DD ++F WE+LLVGP DTLYEGGFFKA L FP+DFPNMPP MTF++EMWHPNVY +G VCISILHPPGED+ N QETADERWRPILGVE+I+VSVISMLSDPND+SPANIDAAV++R D+ GFKKR R +VRKSQE++
Sbjct:    1 MSRNPPEGVSVGLGDDENIFNWEILLVGPPDTLYEGGFFKAVLEFPSDFPNMPPKMTFKSEMWHPNVYPNGVVCISILHPPGEDQLNQQETADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRTDKDGFKKRCRRIVRKSQEDI 152          
The following BLAST results are available for this feature:
BLAST of NO01G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ21237.11.300e-6975.90Ubiquitin-conjugating enzyme E2 [Phytophthora mega... [more]
XP_012198431.14.900e-6975.76hypothetical protein SPRG_04632 [Saprolegnia paras... [more]
XP_008607873.11.100e-6875.15ubiquitin-conjugating enzyme E2 G1 [Saprolegnia di... [more]
XP_009824462.11.100e-6876.83hypothetical protein H257_02490 [Aphanomyces astac... [more]
XP_008863935.14.100e-6875.76hypothetical protein H310_02264 [Aphanomyces invad... [more]
XP_024575030.14.100e-6874.10drug metabolite transporter superfamily [Plasmopar... [more]
CCI40830.17.000e-6875.61unnamed protein product [Albugo candida][more]
AFO84292.16.000e-6775.76ubiquitin conjugative enzyme [Ditylum brightwellii... [more]
OEU15518.11.700e-6675.60ubiquitin-conjugating enzyme protein E2 [Fragilari... [more]
KUF96828.19.500e-6576.97Diacylglycerol O-acyltransferase 2 [Phytophthora n... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008284NSK008284Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00940.1NO01G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576099gene_68Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00940.1NO01G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00940 ID=NO01G00940|Name=NO01G00940|organism=Nannochloropsis oceanica|type=gene|length=2282bp
ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA
TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA
AGCAGCAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG
TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC
AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC
ACGgtacgtgggtcttacttgaggcggaaggaagggctttcaagtgggtg
tcaactttcctccctaatctcctttctttacagccctttctcttgaatac
gctcagcttccacgtttcctgcttgttgaggaaatcgcggcagtaatacg
tcctcggaaatactacttctcttttactcagcaccttttaacctccctcc
ctccccacgtccctctcccggcacagAGCTGAACAAGAACCCTCCTGAAG
GCGTTTCAGTGGGCCTGGTCGATGACAGCCTTTTTGAATGGGAGCTGCTT
CTCGTCGGACCGGCAGACACGCTGTACGAAGgtactggtgtctttacatg
tataaatatctttcgttttgggtctgctattcccctctggtcctcactct
ctctctttccctctctcccctcccttcgtgccttccatgcagGAGGCTTT
TTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCCTCCGAC
CATGACCTTCCAGACGGAGATGTGGCACCCTAATGgtgaggagggcggga
gggaaagagggagggcgggagagatattcatggaaggatggaaggaaaga
ggaagaaggtaaagtgtgcaagcaatgtgtttctcgtgccgtatgttcat
gaaggacacatgcggactttttcctgaagcaaaagcatgcatagcgcaat
aactaacttcccacctcctgcccttctttcctcccttccctccctccttc
cctacctccgtccctccctcctatgccttcttcctttcagTCTACGAGGA
CGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTCA
ACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGAA
GCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGAG
CCCCGCGAATATCGACGCAGCGgtacgtccatgccctccctcctttcctc
cctccctccctccctccctccttccttcccgaccttgcatggccaacgat
ataaagagcgaccgggagcccaccttcccttcctctctccttccctccct
ccctctttctttaccttgcagGTTCAGTTTAGAAACGACCGAGCAGGGTT
CAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATAGG
GAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGGCGCTGGGTTTGT
ACTTAGTTTTCAAGGAGGGGGAGAAGGAGGGAGGGGGGGAAGGACAGTGT
GGTGATGGGTCCATCGTATTGGTTACTCAAAAATGTCATGGCCACTACGA
GGGGGGGCGTGAGCTTCATCAATGACGATAGGGAGGATGGCAAGCCGGAG
ATTTAGGAGGGTATATACATCATGAGATGAGATCAAATGTTTGGATGTGT
AGGCCTAAGTAATTATACAGCATAACCCGAGACTGATTGGACGACTCATG
GAAGCGAATGTGTAGCCCTCTTTAAGAAGACATGTGATGTGATATGGGGG
GGGGGGAGGGGGGGTTTAAAAGGCGTAGGGAAGGAGACTTGTGAGTACCG
TTATGTCGGGGAGTCAGGGAGCTAGTGTCCGAGAACGTGGCGTGAGGACG
GAAGGAGGAACCATTGAGTGTAACAACAACAACGAACTGCGCATACCCGG
AGGAGAGACAAGAGGGAAGATGGCAATAGGAGAAAAAAGGATAAGGGGGG
AGGGCTGGCGACATCTTCCTTTCTCCCACCATCCCTCGCCCCGCCCCGCC
TCCCCCTTTTCCACCAGGGGAATAGACAATAGCAAAAAGAAGATTGCGAT
GAAGCAGAAAAAGAAGAAGAGGAACAAGAAGCAACAGCAGCAATAGCGAC
GATGAAGAGAAAGTAAGGATAGACGAAGGGCCTTACAAAGCGGCATATTA
GAGGGGGGGGGTGCGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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protein sequence of NO01G00940.1

>NO01G00940.1-protein ID=NO01G00940.1-protein|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSDYATELLRRQLHELNKNPPEGVSVGLVDDSLFEWELLLVGPADTLYEG
GFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRF
NDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAG
FKKRVRAVVRKSQEEL*
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Synonyms
Publications