NO01G00910, NO01G00910 (gene) Nannochloropsis oceanica

Overview
NameNO01G00910
Unique NameNO01G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length994
Alignment locationchr1:228211..229204 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:228211..229204 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
[Close]
BLAST of NO01G00910 vs. NCBI_GenBank
Match: OWZ11504.1 (hypothetical protein PHMEG_00015465 [Phytophthora megakarya])

HSP 1 Score: 64.3 bits (155), Expect = 3.800e-7
Identity = 41/136 (30.15%), Postives = 60/136 (44.12%), Query Frame = 0 
Query:    3 VEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            VE      YAK+ GR+  +DD           F+ +IT LPA LGR      P  +               +ALG  K +SR HA I W+    C+ ++C  KNGM  + K    ++   LS +  +++G    YF
Sbjct:   19 VEKRPPLAYAKISGRV--MDD---------APFEKLITHLPAELGRGPISSLPDHR---------------IALGEQKAISRLHARIQWNQSDSCFELQCLGKNGMFADGKFVTKNQTVRLSSKMPLKIGHARVYF 128
[Close]
BLAST of NO01G00910 vs. NCBI_GenBank
Match: POM70673.1 (Fork head transcription factor Fhl1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 64.3 bits (155), Expect = 3.800e-7
Identity = 39/136 (28.68%), Postives = 59/136 (43.38%), Query Frame = 0 
Query:    3 VEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            VE      YAK+ GR+           +    F+ +IT LPA LGR      P  +               +ALG  K +SR HA I W+  + C+ ++C  KNGM  + K    ++   LS +  +++G    YF
Sbjct:   18 VEKRPPLAYAKISGRV-----------LDNTPFEKLITHLPAELGRGPISSLPDHR---------------IALGEQKAISRLHARIQWNQSESCFELQCLGKNGMFADGKFVTKNQTVKLSSKMPLKIGHARVYF 127
[Close]
BLAST of NO01G00910 vs. NCBI_GenBank
Match: POM77377.1 (Fork head transcription factor Fhl1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 64.3 bits (155), Expect = 3.800e-7
Identity = 39/136 (28.68%), Postives = 59/136 (43.38%), Query Frame = 0 
Query:    3 VEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            VE      YAK+ GR+           +    F+ +IT LPA LGR      P  +               +ALG  K +SR HA I W+  + C+ ++C  KNGM  + K    ++   LS +  +++G    YF
Sbjct:   18 VEKRPPLAYAKISGRV-----------LDNTPFEKLITHLPAELGRGPISSLPDHR---------------IALGEQKAISRLHARIQWNQSESCFELQCLGKNGMFADGKFVTKNQTVKLSSKMPLKIGHARVYF 127
The following BLAST results are available for this feature:
BLAST of NO01G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
OWZ11504.13.800e-730.15hypothetical protein PHMEG_00015465 [Phytophthora ... [more]
POM70673.13.800e-728.68Fork head transcription factor Fhl1 [Phytophthora ... [more]
POM77377.13.800e-728.68Fork head transcription factor Fhl1 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00910.1NO01G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00910.1NO01G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00910 ID=NO01G00910|Name=NO01G00910|organism=Nannochloropsis oceanica|type=gene|length=994bp
ATGGAGGTGGAGGACGACGGCGACACAGgtaatcactctagtgtgacttc
tactttttagccctctaccttccaccctccctctctcgcaacctctgttc
tccatactccacctctgtgcctcctcgattcctccctctctttccatttc
gccattcaataagcacctcagaatttctgccttgtcctttttgataaaca
tgccgttcatgatgcggtcgataatttctctcttgtactgtctccaactc
actcccttgcctccctccccccctttgccggttctctttccctccctcct
ccaagGCTATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAG
CACGGGCCAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCA
CTGCCCGCACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAA
AGGAGAGGAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGG
CCTTGGGAACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGG
GACTTTATTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGAT
Ggtacggctggggggagaccgcggcaagaagatcgatgtctctcgtgggt
caataggaaagaaggccgaatgcacgcgaatactcctatctcatcattca
tcttcctcccttctttcttccttcctttcttcgatcgtgagccgaacgca
ctccgagaccgtgtgacaagccgcccctcccttcctccttccctccctcc
ctcctttccttgacccaaacctttcctctctcattctccctccgtccacg
cagACCGTCAACAAGAAGCACTACGCAACGGACGAGCAAGCAATTCTCTC
CGACCGCTCAGCCGTCCGAATGGGCCCGGTCAACTTCTATTTCCACCTGC
CACCAACAGGGGGGAAGGGGAGGGAGGAAGGGAGGAAGGTTTGA
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protein sequence of NO01G00910.1

>NO01G00910.1-protein ID=NO01G00910.1-protein|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MEVEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQ
NQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVI
RCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLPPTGGKGREE
GRKV*
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Synonyms
Publications