NO01G00910, NO01G00910 (gene) Nannochloropsis oceanica

Overview
NameNO01G00910
Unique NameNO01G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length994
Alignment locationchr1:228211..229204 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:228211..229204 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of NO01G00910 vs. NCBI_GenBank
Match: CCA17702.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA18348.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 77.0 bits (188), Expect = 5.600e-11
Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 0
Query:   11 YAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            YAKL GRI   DD+          F+A+IT LP  LGR    PP                G  ++LG  K +SR HA I W+  K C+ + C  KNG+ VN      D+   L+ ++ +R+GP   YF
Sbjct:   30 YAKLSGRI--ADDQV---------FEALITHLPTELGRGPIVPP----------SGTVASGARISLGEQKAISRQHAKIFWNTEKCCFEMECLGKNGLFVNGSFVTKDQVIPLTSKTPIRIGPARLYF 136          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: CCI44315.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 0
Query:   11 YAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            YAKL GRI   DD+A         F+A+IT LP  LGR    P     G    G         ++LG  K +SR HA I W+  K C+ + C  KNG+ VN    A ++   L+ ++ +R+GP   YF
Sbjct:   30 YAKLSGRI--ADDQA---------FEALITHLPTELGRGPIVP---SSGPVASGSR-------ISLGEQKAISRQHAKILWNAEKCCFEMECLGKNGLFVNGSFIAKNQVIPLTSKTPIRIGPARLYF 136          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: XP_012200890.1 (hypothetical protein SPRG_06688 [Saprolegnia parasitica CBS 223.65] >KDO28450.1 hypothetical protein SPRG_06688 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-8
Identity = 37/116 (31.90%), Postives = 55/116 (47.41%), Query Frame = 0
Query:   25 ARAKGVREED--FDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            A+ +G+ +ED  F+A IT LP + GR                  G   G  ++LG    VSR HA+INW+  + C+ + C  KNGM    K     E  +L+ +  +R+G    YF
Sbjct:   20 AKLQGMIDEDRPFEAFITQLPVKFGR------------------GAQAGHAISLGDLMSVSRQHASINWNAERSCFELTCLGKNGMHAGGKRIEQKEVVVLTPKMPLRIGGARIYF 117          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: CBJ48988.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 0
Query:    4 EDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLP 142
            +DD    +AKL G++    D A         F   +T LP+ LGR         +  EG  K       F+ LG +K +SR HA I W   +  Y I+C SKNGM V   ++A      L  R+ +++GP + YF LP
Sbjct:    7 KDDEPCAFAKLWGQL----DGA--------PFHTYVTQLPSTLGRGS-------QATEGARKSAG----FIDLGRSKALSREHAVITWVPSQKSYQIKCMSKNGMVVAGSYHAKGGVEKLESRAPIKLGPASMYFLLP 121          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: OMJ84956.1 (hypothetical protein SteCoe_13865 [Stentor coeruleus])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   72 CFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLP 142
            CF+ LG  KK+SR HA I W+  KGC+ I+   KN + VNK    ++E   L  ++ +++GP  FYF LP
Sbjct:   81 CFIPLGDHKKISRKHAKIFWNTDKGCFQIQNIGKNPIIVNKVDVLSNEIVDLLGKTPIKIGPACFYFLLP 150          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: OQR94859.1 (hypothetical protein ACHHYP_00878 [Achlya hypogyna])

HSP 1 Score: 68.2 bits (165), Expect = 2.600e-8
Identity = 40/116 (34.48%), Postives = 58/116 (50.00%), Query Frame = 0
Query:   25 ARAKGVREED--FDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            A+ KG+  +D  ++A+IT LP  LGR              G K G+     + LG    VSRHHATI+W+  KG + ++C  KNGM  + K    D+   L  +  +R+G    YF
Sbjct:   20 AKLKGMINDDEPYEAVITQLPVDLGR--------------GPKVGQAPS-RIGLGDLMSVSRHHATIDWNTEKGVFELKCVGKNGMYASGKKIEKDQIVTLVPKMPLRIGGARVYF 120          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: GAY05355.1 (Hypothetical protein PINS_013162 [Pythium insidiosum])

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 43/136 (31.62%), Postives = 60/136 (44.12%), Query Frame = 0
Query:    3 VEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            VE+     YAKL GR+             +  F+ +IT LP  LGR      P               G  +ALG  K +SR HA I     K C+ ++C  KNG++V  K+ A D    LS +  +++GP   YF
Sbjct:   16 VENRPPLAYAKLWGRV-----------AEDAPFEMLITHLPVELGRGPLSTTP---------------GPRIALGEAKAISRQHARIQ---DKSCFELQCLGKNGISVAGKYIAKDNTVELSSKMPLKIGPARLYF 122          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: OMJ92027.1 (hypothetical protein SteCoe_5347 [Stentor coeruleus])

HSP 1 Score: 67.0 bits (162), Expect = 5.800e-8
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0
Query:   72 CFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLP 142
            CF+ LG  KK+SR HA I W+  KGC+ I+   KN + V+K          L D++ +++GPV FYF LP
Sbjct:   79 CFIPLGDHKKISRKHAKIFWNKEKGCFQIKNIGKNPIIVSKIDIPNKGVVDLLDKTPIKIGPVCFYFLLP 148          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: XP_008619760.1 (hypothetical protein SDRG_15367 [Saprolegnia diclina VS20] >EQC26858.1 hypothetical protein SDRG_15367 [Saprolegnia diclina VS20])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 40/128 (31.25%), Postives = 56/128 (43.75%), Query Frame = 0
Query:   11 YAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            YAKL G I             E+ F+A IT LP   GR              G + G+  G  + LG    VSR HA+I+W+  + C+ + C  KNGM    K     E  +L+ +  +R+G    YF
Sbjct:   19 YAKLQGMI-----------NEEQSFEAFITQLPVEFGR--------------GAQAGQAAG-RIGLGDLMSVSRQHASIDWNAERSCFELTCLGKNGMHAGGKRIEQKEVVVLTPKMPLRIGGARIYF 120          
BLAST of NO01G00910 vs. NCBI_GenBank
Match: XP_002909218.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58032.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.7 bits (156), Expect = 2.900e-7
Identity = 42/136 (30.88%), Postives = 57/136 (41.91%), Query Frame = 0
Query:    3 VEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            VE      YAKL GR+             +  F+ +IT LPA LGR      P  +               VALG  K VSR HA I W     C+ ++C  KNGM  + K    ++   LS +  +++G    YF
Sbjct:   18 VEKRPPLAYAKLSGRV-----------EGDTPFEKLITHLPAELGRGPISSVPDHR---------------VALGEQKAVSRLHARIQWSQTDSCFELQCLGKNGMFADGKFVTKNQTIKLSSKMPLKIGHARVYF 127          
The following BLAST results are available for this feature:
BLAST of NO01G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
CCA17702.15.600e-1135.16conserved hypothetical protein [Albugo laibachii N... [more]
CCI44315.12.100e-1035.94unnamed protein product [Albugo candida][more]
XP_012200890.11.200e-831.90hypothetical protein SPRG_06688 [Saprolegnia paras... [more]
CBJ48988.11.500e-833.33conserved unknown protein [Ectocarpus siliculosus][more]
OMJ84956.12.000e-842.86hypothetical protein SteCoe_13865 [Stentor coerule... [more]
OQR94859.12.600e-834.48hypothetical protein ACHHYP_00878 [Achlya hypogyna... [more]
GAY05355.13.400e-831.62Hypothetical protein PINS_013162 [Pythium insidios... [more]
OMJ92027.15.800e-842.86hypothetical protein SteCoe_5347 [Stentor coeruleu... [more]
XP_008619760.17.600e-831.25hypothetical protein SDRG_15367 [Saprolegnia dicli... [more]
XP_002909218.12.900e-730.88conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00910.1NO01G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00910.1NO01G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00910 ID=NO01G00910|Name=NO01G00910|organism=Nannochloropsis oceanica|type=gene|length=994bp
ATGGAGGTGGAGGACGACGGCGACACAGgtaatcactctagtgtgacttc
tactttttagccctctaccttccaccctccctctctcgcaacctctgttc
tccatactccacctctgtgcctcctcgattcctccctctctttccatttc
gccattcaataagcacctcagaatttctgccttgtcctttttgataaaca
tgccgttcatgatgcggtcgataatttctctcttgtactgtctccaactc
actcccttgcctccctccccccctttgccggttctctttccctccctcct
ccaagGCTATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAG
CACGGGCCAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCA
CTGCCCGCACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAA
AGGAGAGGAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGG
CCTTGGGAACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGG
GACTTTATTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGAT
Ggtacggctggggggagaccgcggcaagaagatcgatgtctctcgtgggt
caataggaaagaaggccgaatgcacgcgaatactcctatctcatcattca
tcttcctcccttctttcttccttcctttcttcgatcgtgagccgaacgca
ctccgagaccgtgtgacaagccgcccctcccttcctccttccctccctcc
ctcctttccttgacccaaacctttcctctctcattctccctccgtccacg
cagACCGTCAACAAGAAGCACTACGCAACGGACGAGCAAGCAATTCTCTC
CGACCGCTCAGCCGTCCGAATGGGCCCGGTCAACTTCTATTTCCACCTGC
CACCAACAGGGGGGAAGGGGAGGGAGGAAGGGAGGAAGGTTTGA
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protein sequence of NO01G00910.1

>NO01G00910.1-protein ID=NO01G00910.1-protein|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MEVEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQ
NQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVI
RCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLPPTGGKGREE
GRKV*
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Synonyms
Publications