NO01G00900, NO01G00900 (gene) Nannochloropsis oceanica

Overview
NameNO01G00900
Unique NameNO01G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3195
Alignment locationchr1:227774..230968 +

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Properties
Property NameValue
DescriptionFerredoxin-thioredoxin reductase, catalytic chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:227774..230968 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016730oxidoreductase activity, acting on iron-sulfur proteins as donors
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036644FTR_bsu_sf
IPR004209FTR_bsu_dom
Homology
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: OJJ25981.1 (ferredoxin--nitrite reductase [Roseofilum reptotaenium AO1-A])

HSP 1 Score: 171.4 bits (433), Expect = 2.700e-39
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLK 185
            +L+AM+KF+EKY + + TYFCSDL I A V++GLAKHKDELGAPLCPCRHYEDK AE + AYWNCPCVPMRERKECHCMLFLT D PFVGTE+ +  + ++
Sbjct:   14 SLEAMRKFSEKYADNTGTYFCSDLSITAVVIEGLAKHKDELGAPLCPCRHYEDKEAEAKAAYWNCPCVPMRERKECHCMLFLTEDNPFVGTERNISIDQIR 114
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_036477662.1 (ferredoxin--nitrite reductase [Myxosarcina sp. GI1])

HSP 1 Score: 171.0 bits (432), Expect = 3.500e-39
Identity = 73/112 (65.18%), Postives = 91/112 (81.25%), Query Frame = 0 
Query:   74 APAAGPDPAVTLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKD 186
            +PA  PD   TL++M KFA++Y   +DTYFCSDL + A V++GLA+HKDELGAPLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLF+TPD  F G +Q++  EM+K+
Sbjct:    6 SPAKNPDK--TLQSMTKFAQQYARSTDTYFCSDLSVTAVVIEGLARHKDELGAPLCPCRHYEDKQAEVKNTFWNCPCVPMRERKECHCMLFITPDNEFAGDKQEIELEMIKE 115
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: 2PVG_A (Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase)

HSP 1 Score: 167.5 bits (423), Expect = 3.900e-38
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 0 
Query:   82 AVTLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKDE 187
            A TL AM+ FAE+Y + +DTYFCSDL + A V++GLA+HK+ELG+PLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLFLTPD  F G  Q +P E L+++
Sbjct:    1 AATLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEK 105
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_019504315.1 (hypothetical protein [Pleurocapsa sp. PCC 7319])

HSP 1 Score: 167.2 bits (422), Expect = 5.100e-38
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 0 
Query:   78 GPDPAVTLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKDEGLGLK 192
            G  P   L++M+KFAE+Y + +DTYFCSDL + A V+KGLAKHK ELG PLCPCRHYEDK AEV+ AYWNCPCVPMRE K+CHCMLFLTPD  F G  Q++  E +     G++
Sbjct:   10 GKSPDKILESMKKFAEQYAKRTDTYFCSDLSVTAAVIKGLAKHKQELGCPLCPCRHYEDKQAEVKKAYWNCPCVPMREEKKCHCMLFLTPDNAFAGDTQQISTEQINQFCQGMQ 123
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_046276444.1 (ferredoxin--nitrite reductase [Limnoraphis robusta] >KKD40047.1 ferredoxin--nitrite reductase [Limnoraphis robusta CS-951])

HSP 1 Score: 166.8 bits (421), Expect = 6.700e-38
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLK 185
            +LKAM+KFAEKY + ++TYFC D  + A V++GLAKHKDELGAPLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLFLTPD  F G +Q + DE L+
Sbjct:   14 SLKAMKKFAEKYAKNTNTYFCVDPSVTAVVIEGLAKHKDELGAPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGEKQDISDEDLE 114
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_046662081.1 (ferredoxin--nitrite reductase [Microcystis aeruginosa])

HSP 1 Score: 166.8 bits (421), Expect = 6.700e-38
Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKD 186
            +L+AM+KFAE+Y + ++TYFCSDL + A V++GLA+HKDELGAPLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLF+TPD  F G EQ +P + +++
Sbjct:   10 SLEAMKKFAEQYAKGTNTYFCSDLSVTAVVIEGLARHKDELGAPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFITPDNEFAGEEQTIPLDYIQE 111
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_009767623.1 (ferredoxin:thioredoxin reductase [Oscillatoriales cyanobacterium JSC-12] >EKQ68509.1 ferredoxin-thioredoxin reductase, catalytic subunit [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 166.4 bits (420), Expect = 8.700e-38
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLK 185
            +L+AM+ F+EKY + + TYFCSD  + A V++GLAKHKDELG+PLCPCRHYEDKAAE + AYWNCPCVPMRERKECHCMLFLTPD PF G  Q++  E ++
Sbjct:   14 SLEAMRHFSEKYAKNTGTYFCSDPGVTAVVIEGLAKHKDELGSPLCPCRHYEDKAAEAEAAYWNCPCVPMRERKECHCMLFLTPDNPFAGNAQEISIEQIR 114
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: 1DJ7_A (Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase)

HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKD 186
            TL AM+ FAE+Y + +DTYFCSDL + A V++GLA+HK+ELG+PLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLFLTPD  F G  Q +P E L++
Sbjct:   10 TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEE 111
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: AGW21632.1 (NLS-FTR117-CFP [Yeast integrative vector pFTR117-CFP])

HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKD 186
            TL AM+ FAE+Y + +DTYFCSDL + A V++GLA+HK+ELG+PLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLFLTPD  F G  Q +P E L++
Sbjct:   41 TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEE 142
[Close]
BLAST of NO01G00900 vs. NCBI_GenBank
Match: WP_010873706.1 (MULTISPECIES: ferredoxin:thioredoxin reductase [Synechocystis] >Q55389.1 RecName: Full=Ferredoxin-thioredoxin reductase, catalytic chain; Short=FTR-C; AltName: Full=Ferredoxin-thioredoxin reductase subunit B; Short=FTR-B >BAA10479.1 ferredoxin-thioredoxin reductase, catalytic chain [Synechocystis sp. PCC 6803] >BAK51264.1 ferredoxin-thioredoxin reductase catalytic chain [Synechocystis sp. PCC 6803] >BAL30262.1 ferredoxin-thioredoxin reductase catalytic chain [Synechocystis sp. PCC 6803 substr. GT-I] >BAL33431.1 ferredoxin-thioredoxin reductase catalytic chain [Synechocystis sp. PCC 6803 substr. PCC-N] >BAL36600.1 ferredoxin-thioredoxin reductase catalytic chain [Synechocystis sp. PCC 6803 substr. PCC-P] >BAM53925.1 ferredoxin-thioredoxin reductase, catalyticchain [Synechocystis sp. PCC 6803] >AGF52771.1 ferredoxin-thioredoxin reductase, catalytic chain [Synechocystis sp. PCC 6803] >ALJ68684.1 ferredoxin--nitrite reductase [Synechocystis sp. PCC 6803] >AVP90537.1 ferredoxin:thioredoxin reductase [Synechocystis sp. IPPAS B-1465])

HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:   84 TLKAMQKFAEKYCEISDTYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPCVPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKD 186
            TL AM+ FAE+Y + +DTYFCSDL + A V++GLA+HK+ELG+PLCPCRHYEDK AEV+  +WNCPCVPMRERKECHCMLFLTPD  F G  Q +P E L++
Sbjct:   11 TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEE 112
The following BLAST results are available for this feature:
BLAST of NO01G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OJJ25981.12.700e-3971.29ferredoxin--nitrite reductase [Roseofilum reptotae... [more]
WP_036477662.13.500e-3965.18ferredoxin--nitrite reductase [Myxosarcina sp. GI1... [more]
2PVG_A3.900e-3866.67Chain A, Crystal Srtucture Of The Binary Complex B... [more]
WP_019504315.15.100e-3862.28hypothetical protein [Pleurocapsa sp. PCC 7319][more]
WP_046276444.16.700e-3870.30ferredoxin--nitrite reductase [Limnoraphis robusta... [more]
WP_046662081.16.700e-3866.67ferredoxin--nitrite reductase [Microcystis aerugin... [more]
WP_009767623.18.700e-3868.32ferredoxin:thioredoxin reductase [Oscillatoriales ... [more]
1DJ7_A1.100e-3767.65Chain A, Crystal Structure Of Ferredoxin Thioredox... [more]
AGW21632.11.100e-3767.65NLS-FTR117-CFP [Yeast integrative vector pFTR117-C... [more]
WP_010873706.11.100e-3767.65MULTISPECIES: ferredoxin:thioredoxin reductase [Sy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008289NSK008289Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00900.1NO01G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576089gene_65Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00900.1NO01G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00900 ID=NO01G00900|Name=NO01G00900|organism=Nannochloropsis oceanica|type=gene|length=3195bp
CCCTCCCTCCCTCCCTCCTGCTTCTCAAACTTTCTGGTCAACGCATTCTG
GATTCCATTCATCAGCTGCCTTCGTCTCTCCCCCGCTTCCTCCTCCCCTC
CCTCCCTCCACTCGCTGTGCGTCTTGAACAGCCACTGGGTCACTTCATGG
CTGGTCAGCCCTCCCTCCCTCCCTCGCTCCCTCAACTCCTCGCACGCAAA
TGCCTCCATCACCATGTCCGCGTACGACATGCTCCCTTCAGGCTTGTTAC
TATGACTCGCTTTCCCCCCCCCTTTCCCCCTACTCCCCCTCCTCCACCAC
CACCTTTAAGCGCACCCTCATTCACCACACTCAGCACATTACCTCCCTTC
CCCCCTCCTCCCCCTTTTCCCCTCCTTTCCTCCCCTGCTTCTGCTGCGGC
TGCTCCCCGTCTTCCTCGTACACCTCCTCTCTCCGCATCAAACCTTCCTC
CCTTCCTCCCTCCCCTTCCCCCCTGTTGGTGGCAGGTGGAAATAGAAGTT
GACCGGGCCCATTCGGACGGCTGAGCGGTCGGAGAGAATTGCTTGCTCGT
CCGTTGCGTAGTGCTTCTTGTTGACGGTCTGCGTGGACGGAGGGAGAATG
AGAGAGGAAAGGTTTGGGTCAAGGAAAGGAGGGAGGGAGGGAAGGAGGAA
GGGAGGGGCGGCTTGTCACACGGTCTCGGAGTGCGTTCGGCTCACGATCG
AAGAAAGGAAGGAAGAAAGAAGGGAGGAAGATGAATGATGAGATAGGAGT
ATTCGCGTGCATTCGGCCTTCTTTCCTATTGACCCACGAGAGACATCGAT
CTTCTTGCCGCGGTCTCCCCCCAGCCGTACCATCCCATTCTTCGAAAAAC
ACCGAATGACGTAGCACCCCTTAATAAAGTCCCAATTTATCGTCGCGTGA
TGCCTCGATACCTTCTTGGTGGTTCCCAAGGCCACGAAGCATCCTTCCCC
CTCCCCTTCCTTCCCTCCCCCCTCCTCTCCTTTCATCATAGGGGGGGGTT
GATTCTGGTGCCGGCCCAGGCGTGCGGGCAGTGCAGTGATGATGGCGTCG
AAATCTTCTTCTCTGACGCCTTTGGCCCGTGCTTCATCGTCGACGTAAAA
TATGCGGCCGATGAGCTTGGCATAGCCTTGGAGGAGGGAGGGAAAGAGAA
CCGGCAAAGGGGGGGAGGGAGGCAAGGGAGTGAGTTGGAGACAGTACAAG
AGAGAAATTATCGACCGCATCATGAACGGCATGTTTATCAAAAAGGACAA
GGCAGAAATTCTGAGGTGCTTATTGAATGGCGAAATGGAAAGAGAGGGAG
GAATCGAGGAGGCACAGAGGTGGAGTATGGAGAACAGAGGTTGCGAGAGA
GGGAGGGTGGAAGGTAGAGGGCTAAAAAGTAGAAGTCACACTAGAGTGAT
TACCTGTGTCGCCGTCGTCCTCCACCTCCATGGCTTCTTGTTGCATGTGG
TGGATATGACTGCGGGAGTGAGTGAATGGGTGTAGGGTGACCGAGGTGGG
GGAGAGCAAGGCTGCTTGCTTGCTGCTCAAGACGGCGGCGATGTTGCCTG
TCGGTTGGAATATAGAATGAATTGAGTTTAGGTCGTGGAGGACAGAAAAA
TAGAGACACATACATGTACATCCCAACAATGCAGCAGGCACAAAAAAGAA
GCAGCGCACACATTGTCTTTTCGGATGGCTGTGTGTCTAAATGCTTGCAA
TAACAACATATAACAAGGGGTGGTTCGATTTTCCACAGACGGAAAAATGA
CACGATCTTTGATGTGGACGGAGCCACATTTGCGCCCGCTCAGGCCTTCT
ATCACCATAAAGCATTCTTAACCTTCTCTCTTTTATGCTGCCATTCACGG
TTGGCTTGTCTCACGCCGCCTTTCATCGTGTCCCTTTATCCATGCACATG
CACTCACAGCTAGAGTCTTGCTCTGTCGTTCTTCTTGCTTCAAGCGCCCT
ACCACAACCACCTCACTATGCCGTCCTGGGCGTCATCCGTCCTTTTTTTG
GCAGCTGCTGCCGCCGTCACCAGTACAACGCGTGCCTTCATGCCGCCTGC
CACGCCTGGAACACCGGCCCCGAACTCCAGCCCCAGAGgtaggctaggca
ttgggacggaaagggaagggggaggacgggccggggctaccgcaacctga
gagcaatgccaggcattaaggtgaaaggacaacacctcaacgcacccaca
cactcacacgttgtcctgataaaacgcatatacagAACCAGCAGCAGCCA
AAGAAACCAACAAAGCCCCGGCGCTCGTGGCGCCCGCAGATCTGGTGCGC
TTGCAAGCTGAGCCGgtatggacctttctctctccctcccttcctcccct
tctctctccctctttccctgtcctcgtcctcgtccttccatcgttcactt
cactttagtgcacacgtattgcatcattcatccgctgctgtctcaatcat
gactaacagccgcatgatctcaccctcccctccccccccccccttcctcc
cttcgttacttttttctttccttccttccctttcaagCAAAGAGCCGGTG
GCGCCGCCCCCGCAGCTGGCCCTGACCCAGCCGTCACTTTGAAGGCCATG
CAGAAATTTGCGGAAAAATACTGCGAGATCAGTGACACGTACTTCTGCTC
CGACTTAGAGATCGCCGCTACCGTTGTCAAGGgtaaatatccctccctac
ctccctcgctccctccctccctcctgtctctcgaatgatgagcgtgcatg
gatagatgtgcccggagtatcttttttccatgtgttaattgggagagaaa
agtcctgaaggtgccgcactgcctcctgtccttccactcttacacttaac
cctcttttcctctttatattatccactcttacactcaaccctctttcccc
tctttatataaacatccactctgacgcccaacccttcctgacatccgtcc
aaacacttattgaagGCCTGGCCAAGCACAAGGACGAACTAGGCGCTCCT
CTCTGTCCATGCCGGCACTATGAAGACAAGGCAGCAGAGGTGCAGATGGC
GTACTGGAATTGTCCGTGCGTCCCAATGCGGGAAAGGAAAGAGTGTCATT
GCATGTTGTTTTTAACACCCGACACCCCCTTTGTGGGCACAGAGCAGAAG
CTGCCGGACGAGATGCTGAAGGATGAGGGATTAGGCCTGAAGTAA
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protein sequence of NO01G00900.1

>NO01G00900.1-protein ID=NO01G00900.1-protein|Name=NO01G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPSWASSVLFLAAAAAVTSTTRAFMPPATPGTPAPNSSPREPAAAKETNK
APALVAPADLVRLQAEPQRAGGAAPAAGPDPAVTLKAMQKFAEKYCEISD
TYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPC
VPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKDEGLGLK*
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Synonyms
Publications