NO01G00870, NO01G00870 (gene) Nannochloropsis oceanica

Overview
NameNO01G00870
Unique NameNO01G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1175
Alignment locationchr1:224467..225641 -

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Properties
Property NameValue
Description50s ribosomal protein l13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:224467..225641 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036899Ribosomal_L13_sf
IPR005822Ribosomal_L13
Homology
BLAST of NO01G00870 vs. NCBI_GenBank
Match: EWM29017.1 (50s ribosomal protein l13 [Nannochloropsis gaditana])

HSP 1 Score: 284.3 bits (726), Expect = 2.500e-73
Identity = 135/166 (81.33%), Postives = 152/166 (91.57%), Query Frame = 0
Query:    1 MSSTTTAGSAASAVYTRLTMTVKDAALEAAKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            MS++  A SAASA++TR++ TVKDAALEAAKKARPQWHLIDAKDQVVGR+ASQIA I+RG+HKPF+ PN DCGD+VVVVNARH+  TGRKMKDK YYWHTMHPGGLKSRTP+QLIERGQ+EEILRHAVLGMLPKN LR+  IKKLRVFPEKYHIYE+QLRGKQ L+
Sbjct:    1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_008861756.1 (ribosomal protein L13 [Aphanomyces invadans] >ETW10345.1 ribosomal protein L13 [Aphanomyces invadans])

HSP 1 Score: 166.4 bits (420), Expect = 7.600e-38
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQL 160
            ++  R  +H++DAK QVVGR+ASQ+APILRG+HKP + PN DCGD VVV+NA HI  TG K KDKLY WHTM+PGGLK+RT QQ+ ++    EILR AV+GMLPKN +R   + KL++FP   H +E +L
Sbjct:    6 SRMGRTAYHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWKDKLYRWHTMYPGGLKTRTAQQIKDKDPG-EILRKAVMGMLPKNKMRALQVNKLKIFPGDEHTFEAEL 134          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: GAX99617.1 (Mitochondrial/chloroplast ribosomal protein L13 [Pythium insidiosum])

HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37
Identity = 74/137 (54.01%), Postives = 105/137 (76.64%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            AK ++  WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I  TG K   KLY WHT HPGGLK RT +++ ER + EE+LR AV GMLPKN +R    +KL++F ++ H +++Q+ G+ P++
Sbjct:    7 AKASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGDKWDQKLYRWHTGHPGGLKQRTAREMFER-KPEEVLRRAVFGMLPKNKMRKLQDQKLKIFLDEEHDFKEQV-GENPVI 141          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: OQS02529.1 (50S ribosomal protein L13 [Thraustotheca clavata])

HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36
Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 0
Query:   37 WHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQP 165
            +H++DA+ QVVGR+ASQ+APILRG+HKP ++PN DCGD VVV+NA+ I  TG K  DKLY WHT +PGGLK RT +Q+ E+  S E+LR A++GMLPKN +R   IKKL++FP + H +E +L G+ P
Sbjct:   13 YHVVDARGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGYPGGLKERTAKQINEK-DSGEVLRKAIMGMLPKNKMRALQIKKLKIFPGEEHTFEQEL-GENP 138          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_009827530.1 (ribosomal protein L13 [Aphanomyces astaci] >ETV82859.1 ribosomal protein L13 [Aphanomyces astaci])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 0
Query:   37 WHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQL 160
            +H++DAK QVVGR+ASQ+APILRG+HKP + PN DCGD VVV+NA HI  TG K  DKLY WHTM+PGGLK+RT QQ+ ++  + +ILR AV+GMLPKN +R   + KL++FP   H +  +L
Sbjct:   13 YHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWSDKLYRWHTMYPGGLKTRTAQQIKDK-DTTDILRKAVMGMLPKNKMRALQVDKLKIFPGDEHTFHAEL 134          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_009515542.1 (Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae] >EGZ28267.1 Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae])

HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            A+ ++  WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I  TG K  +KLY WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N +R    KKL++F  + H +  ++ G+ P++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVFGMLPRNRMRALQDKKLKIFMGEEHDFVAEV-GENPVI 139          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_008909591.1 (ribosomal protein L13 [Phytophthora parasitica INRA-310] >XP_008909592.1 ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >ETI40549.1 ribosomal protein L13 [Phytophthora parasitica P1569] >ETI40550.1 ribosomal protein L13, variant [Phytophthora parasitica P1569] >ETK80639.1 ribosomal protein L13 [Phytophthora parasitica] >ETK80640.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETL87341.1 ribosomal protein L13 [Phytophthora parasitica] >ETL87342.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETM40562.1 ribosomal protein L13 [Phytophthora parasitica] >ETM40563.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETN05121.1 ribosomal protein L13 [Phytophthora parasitica INRA-310] >ETN05122.1 ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >ETO69195.1 ribosomal protein L13 [Phytophthora parasitica P1976] >ETO69196.1 ribosomal protein L13, variant [Phytophthora parasitica P1976] >ETP38457.1 ribosomal protein L13 [Phytophthora parasitica P10297] >ETP38458.1 ribosomal protein L13, variant [Phytophthora parasitica P10297])

HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            A+ ++  WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I  TG K  +KLY WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N +R    KKL++F  + H +  ++ G+ P++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENPVI 139          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_024579909.1 (ribosomal protein l13 [Plasmopara halstedii] >CEG43540.1 ribosomal protein l13 [Plasmopara halstedii])

HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36
Identity = 72/137 (52.55%), Postives = 104/137 (75.91%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            A+ ++  WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I  TG K  +KLY WHT HPGGLK RT ++L+ER + E++LR AV GMLP+N +R    KKL++F  + H +  ++ G+ P++
Sbjct:    5 AQASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNADCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELLER-KPEQVLRKAVYGMLPRNRMRALQDKKLKIFMGETHDFVKEV-GENPVI 139          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: CCA22650.1 (50S ribosomal protein L13 putative [Albugo laibachii Nc14])

HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35
Identity = 72/139 (51.80%), Postives = 103/139 (74.10%), Query Frame = 0
Query:   28 EAAKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            + A  ++  WH++DAK Q+VGR+ASQ+APIL G+HKP ++PN DCGD +VV+NA+ + FTG K   KLY WHT HPGGLK RT +++  R + EEILR AV GMLPKN +R   I+KL++F ++ H ++D++ G  P++
Sbjct:    5 QIANASKVCWHVVDAKGQIVGRLASQLAPILCGKHKPTYAPNVDCGDHLVVINAKDLVFTGDKWNQKLYRWHTGHPGGLKERTAKEMFAR-KPEEILRKAVYGMLPKNKMRKLQIQKLKIFLDEEHDFQDKV-GTNPVI 141          
BLAST of NO01G00870 vs. NCBI_GenBank
Match: KUF80356.1 (50S ribosomal protein L13 [Phytophthora nicotianae])

HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35
Identity = 73/137 (53.28%), Postives = 102/137 (74.45%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167
            A+ ++  WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I  TG K  +KLY WHT HPGGLK RT ++L ER   EE+LR AV GMLP+N +R    KKL++F  + H +  ++ G+ P++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-XPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENPVI 139          
The following BLAST results are available for this feature:
BLAST of NO01G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29017.12.500e-7381.3350s ribosomal protein l13 [Nannochloropsis gaditan... [more]
XP_008861756.17.600e-3858.46ribosomal protein L13 [Aphanomyces invadans] >ETW1... [more]
GAX99617.12.200e-3754.01Mitochondrial/chloroplast ribosomal protein L13 [P... [more]
OQS02529.12.400e-3657.8150S ribosomal protein L13 [Thraustotheca clavata][more]
XP_009827530.15.400e-3658.54ribosomal protein L13 [Aphanomyces astaci] >ETV828... [more]
XP_009515542.19.300e-3653.28Mitochondrial/chloroplast ribosomal protein L13 [P... [more]
XP_008909591.19.300e-3653.28ribosomal protein L13 [Phytophthora parasitica INR... [more]
XP_024579909.19.300e-3652.55ribosomal protein l13 [Plasmopara halstedii] >CEG4... [more]
CCA22650.11.600e-3551.8050S ribosomal protein L13 putative [Albugo laibach... [more]
KUF80356.11.600e-3553.2850S ribosomal protein L13 [Phytophthora nicotianae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008292NSK008292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00870.1NO01G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576080gene_61Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101050g2gene1598Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00870.1NO01G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00870 ID=NO01G00870|Name=NO01G00870|organism=Nannochloropsis oceanica|type=gene|length=1175bp
ACAGGTTCCCAGCCCTTGCGTGTCCCTCTCCCTCCCGTCTCCCTCCTGCC
CTTCATAATCATCATCATCACCACATCCCCAAGATAAGCGCGCATCATGA
GCTCAACCACGACCGCAGGCTCCGCCGCCTCAGCCGTCTACACCCGCCTG
ACTATGACAGTCAAGGATGCGGCATTGGAAGCTGCCAAGAAGGCCCGGCC
GCAATGGCATTTGATCGATGCGAAGGACCAGgtatatgtgggatctgttg
accctcccttcaccccttcctccctccctttgtcccgtcctcattttccc
ttgccttacagttgtagaccctgtttgcacgaatgaaagatatcttgctg
ccgggaaatccctccctacctgtatcttctcactcctctccattcctccc
attctccaagGTCGTCGGCCGCATCGCCAGTCAAATCGCCCCTATCCTCC
GTGGACAGCACAAGCCCTTCTTCAGCCCCAACACCGACTGTGGTGACTTT
GTCGTGGTCGTCAATGCCCGGCACATCGCCTTCACGGGCCGAAAAATGAA
GGATAAGCTGTACTATTGGCATACAATGCACCCTGGCGGACTCAAGTCGC
GGACCCCGCAGCAACTGATAGAAAGAGGACAGAGCGAGGAGATACTCCGA
CATGCGGTGCTAGGTATGTTGCCCAAGAACAGTCTTAGACACCAGGTGAT
CAAGAAACTGAGGGTGTTTCCCGAGAAATACCACATTTATGAGGACCAGT
TGCGGGGGAAGCAGCCACTCATGTAGAGAGGGGGGGGAGGAAAGACAAGA
GCACGTGAATCTGACAAATTCCTTACTTTCCCCTTAAGGATGATGTTTCT
AGGGGGGGAAAGGCATGACAACTGTTTATTTTATGTTTCTTTGTGAAGAA
GGAAGGTGCATTTTTGCTTTGTTTTGTTTGTCGGTAGAATTTCTGCTATC
CGTCGTGTTTTGTTCTGTGGTTTTGTCGCGAGCGGCGCCGTCCTAGAGAA
TGTCTGTACGTATATACGGAGATGGAATGCATAAGATAACTTGAATGAAA
AAGGAAAGTCAACCACTCGGCAGAAGTCATATGCAACTTCCAGATTCTCC
TTTACATTGCCGAGCATCGACATTTATTTTGCGGATCGAATCGAATCAAA
TCAAATCAATGCCGGCTGGGTGACA
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protein sequence of NO01G00870.1

>NO01G00870.1-protein ID=NO01G00870.1-protein|Name=NO01G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSSTTTAGSAASAVYTRLTMTVKDAALEAAKKARPQWHLIDAKDQVVGRI
ASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHT
MHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPE
KYHIYEDQLRGKQPLM*
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Synonyms
Publications