NO01G00870, NO01G00870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G00870 vs. NCBI_GenBank
Match: EWM29017.1 (50s ribosomal protein l13 [Nannochloropsis gaditana]) HSP 1 Score: 284.3 bits (726), Expect = 2.500e-73 Identity = 135/166 (81.33%), Postives = 152/166 (91.57%), Query Frame = 0 Query: 1 MSSTTTAGSAASAVYTRLTMTVKDAALEAAKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 MS++ A SAASA++TR++ TVKDAALEAAKKARPQWHLIDAKDQVVGR+ASQIA I+RG+HKPF+ PN DCGD+VVVVNARH+ TGRKMKDK YYWHTMHPGGLKSRTP+QLIERGQ+EEILRHAVLGMLPKN LR+ IKKLRVFPEKYHIYE+QLRGKQ L+ Sbjct: 1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_008861756.1 (ribosomal protein L13 [Aphanomyces invadans] >ETW10345.1 ribosomal protein L13 [Aphanomyces invadans]) HSP 1 Score: 166.4 bits (420), Expect = 7.600e-38 Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQL 160 ++ R +H++DAK QVVGR+ASQ+APILRG+HKP + PN DCGD VVV+NA HI TG K KDKLY WHTM+PGGLK+RT QQ+ ++ EILR AV+GMLPKN +R + KL++FP H +E +L Sbjct: 6 SRMGRTAYHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWKDKLYRWHTMYPGGLKTRTAQQIKDKDPG-EILRKAVMGMLPKNKMRALQVNKLKIFPGDEHTFEAEL 134
BLAST of NO01G00870 vs. NCBI_GenBank
Match: GAX99617.1 (Mitochondrial/chloroplast ribosomal protein L13 [Pythium insidiosum]) HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37 Identity = 74/137 (54.01%), Postives = 105/137 (76.64%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 AK ++ WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I TG K KLY WHT HPGGLK RT +++ ER + EE+LR AV GMLPKN +R +KL++F ++ H +++Q+ G+ P++ Sbjct: 7 AKASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGDKWDQKLYRWHTGHPGGLKQRTAREMFER-KPEEVLRRAVFGMLPKNKMRKLQDQKLKIFLDEEHDFKEQV-GENPVI 141
BLAST of NO01G00870 vs. NCBI_GenBank
Match: OQS02529.1 (50S ribosomal protein L13 [Thraustotheca clavata]) HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36 Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 0 Query: 37 WHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQP 165 +H++DA+ QVVGR+ASQ+APILRG+HKP ++PN DCGD VVV+NA+ I TG K DKLY WHT +PGGLK RT +Q+ E+ S E+LR A++GMLPKN +R IKKL++FP + H +E +L G+ P Sbjct: 13 YHVVDARGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGYPGGLKERTAKQINEK-DSGEVLRKAIMGMLPKNKMRALQIKKLKIFPGEEHTFEQEL-GENP 138
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_009827530.1 (ribosomal protein L13 [Aphanomyces astaci] >ETV82859.1 ribosomal protein L13 [Aphanomyces astaci]) HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36 Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 0 Query: 37 WHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQL 160 +H++DAK QVVGR+ASQ+APILRG+HKP + PN DCGD VVV+NA HI TG K DKLY WHTM+PGGLK+RT QQ+ ++ + +ILR AV+GMLPKN +R + KL++FP H + +L Sbjct: 13 YHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWSDKLYRWHTMYPGGLKTRTAQQIKDK-DTTDILRKAVMGMLPKNKMRALQVDKLKIFPGDEHTFHAEL 134
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_009515542.1 (Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae] >EGZ28267.1 Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae]) HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36 Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 A+ ++ WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I TG K +KLY WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N +R KKL++F + H + ++ G+ P++ Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVFGMLPRNRMRALQDKKLKIFMGEEHDFVAEV-GENPVI 139
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_008909591.1 (ribosomal protein L13 [Phytophthora parasitica INRA-310] >XP_008909592.1 ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >ETI40549.1 ribosomal protein L13 [Phytophthora parasitica P1569] >ETI40550.1 ribosomal protein L13, variant [Phytophthora parasitica P1569] >ETK80639.1 ribosomal protein L13 [Phytophthora parasitica] >ETK80640.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETL87341.1 ribosomal protein L13 [Phytophthora parasitica] >ETL87342.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETM40562.1 ribosomal protein L13 [Phytophthora parasitica] >ETM40563.1 ribosomal protein L13, variant [Phytophthora parasitica] >ETN05121.1 ribosomal protein L13 [Phytophthora parasitica INRA-310] >ETN05122.1 ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >ETO69195.1 ribosomal protein L13 [Phytophthora parasitica P1976] >ETO69196.1 ribosomal protein L13, variant [Phytophthora parasitica P1976] >ETP38457.1 ribosomal protein L13 [Phytophthora parasitica P10297] >ETP38458.1 ribosomal protein L13, variant [Phytophthora parasitica P10297]) HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36 Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 A+ ++ WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I TG K +KLY WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N +R KKL++F + H + ++ G+ P++ Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENPVI 139
BLAST of NO01G00870 vs. NCBI_GenBank
Match: XP_024579909.1 (ribosomal protein l13 [Plasmopara halstedii] >CEG43540.1 ribosomal protein l13 [Plasmopara halstedii]) HSP 1 Score: 159.5 bits (402), Expect = 9.300e-36 Identity = 72/137 (52.55%), Postives = 104/137 (75.91%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 A+ ++ WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I TG K +KLY WHT HPGGLK RT ++L+ER + E++LR AV GMLP+N +R KKL++F + H + ++ G+ P++ Sbjct: 5 AQASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNADCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELLER-KPEQVLRKAVYGMLPRNRMRALQDKKLKIFMGETHDFVKEV-GENPVI 139
BLAST of NO01G00870 vs. NCBI_GenBank
Match: CCA22650.1 (50S ribosomal protein L13 putative [Albugo laibachii Nc14]) HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35 Identity = 72/139 (51.80%), Postives = 103/139 (74.10%), Query Frame = 0 Query: 28 EAAKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 + A ++ WH++DAK Q+VGR+ASQ+APIL G+HKP ++PN DCGD +VV+NA+ + FTG K KLY WHT HPGGLK RT +++ R + EEILR AV GMLPKN +R I+KL++F ++ H ++D++ G P++ Sbjct: 5 QIANASKVCWHVVDAKGQIVGRLASQLAPILCGKHKPTYAPNVDCGDHLVVINAKDLVFTGDKWNQKLYRWHTGHPGGLKERTAKEMFAR-KPEEILRKAVYGMLPKNKMRKLQIQKLKIFLDEEHDFQDKV-GTNPVI 141
BLAST of NO01G00870 vs. NCBI_GenBank
Match: KUF80356.1 (50S ribosomal protein L13 [Phytophthora nicotianae]) HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35 Identity = 73/137 (53.28%), Postives = 102/137 (74.45%), Query Frame = 0 Query: 30 AKKARPQWHLIDAKDQVVGRIASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHTMHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPEKYHIYEDQLRGKQPLM 167 A+ ++ WH++DAK QV+GR+ASQ+APILRG+HKP ++PN DCGD+VVV+NA+ I TG K +KLY WHT HPGGLK RT ++L ER EE+LR AV GMLP+N +R KKL++F + H + ++ G+ P++ Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-XPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENPVI 139 The following BLAST results are available for this feature:
BLAST of NO01G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G00870 ID=NO01G00870|Name=NO01G00870|organism=Nannochloropsis oceanica|type=gene|length=1175bpback to top protein sequence of NO01G00870.1 >NO01G00870.1-protein ID=NO01G00870.1-protein|Name=NO01G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bpback to top Synonyms
Publications
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