NO01G00820, NO01G00820 (gene) Nannochloropsis oceanica

Overview
NameNO01G00820
Unique NameNO01G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2746
Alignment locationchr1:206773..209518 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase DEAD-box type
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:206773..209518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO01G00820 vs. NCBI_GenBank
Match: EPR59668.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii GT1] >KFG41626.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii FOU] >KFG42171.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii GAB2-2007-GAL-DOM2])

HSP 1 Score: 255.0 bits (650), Expect = 6.600e-64
Identity = 175/492 (35.57%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + G+A+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGKALNFYYDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKLE 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: PHJ25613.1 (dead deah box helicase domain-containing protein, partial [Cystoisospora suis])

HSP 1 Score: 255.0 bits (650), Expect = 6.600e-64
Identity = 177/484 (36.57%), Postives = 244/484 (50.41%), Query Frame = 0
Query:  159 VPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFFDR-----DIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQ---ADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            V F  +G+ P    AL   G   +T IQ L++P+IL G D VIG+ETG+GKTL Y++ V+              I++M +  +  AA+            +   A   P   P+A+++VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP+ L+ F R      +G F  + +VV+DEADMLL+G Y   +D I  AF++AD+         TQY+ AAAT+P  G KSV + +    P A    T  +H+H  +L Q F+E P G  E+  M       L  K R L+  E                   K MIF NTAQ A RV   L +   A  P + F  DI   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  RAG+ GRA+NF+ E    LV  +Q A  +    S+  +FSR+R FRKK+K
Sbjct:  208 VSFPRIGIFPDFAEALQGLGVTRTTDIQQLAIPAILGGLDTVIGAETGSGKTLGYIIGVVQ----------NILIQKMIHEKKEDAAM------------MEKEALPIPRHHPYAVIIVPTRELALQVVAWVRRLC--------RKTTITAQLMLGTYTRWPFGTLALPTSPDLVVCTPSVLAPFARGTKTKSLGPFREIQVVVLDEADMLLDGGYRESMDAIFTAFRKADQQLAREKRRRTQYIFAAATIPDRGPKSVRKTITSLCPKATFFYTRSLHQHKEQLAQEFIEVPPGASEEDRM-----ALLLGKLRELSGNE-------------------KVMIFCNTAQTAQRVLKTLEKEIPASRPKL-FSSDIDQKDRAFNLGLFSRGKCRVLVCTDAASRGLDIVGVTLVVQYDFALSAVSHLHRVGRVARAGQPGRALNFFSEDQKLLVSIVQEAARDPHSTSVAAAFSRRRSFRKKIK 636          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: PFH31979.1 (DEAD/DEAH box helicase domain-containing protein [Besnoitia besnoiti])

HSP 1 Score: 250.8 bits (639), Expect = 1.300e-62
Identity = 176/496 (35.48%), Postives = 259/496 (52.22%), Query Frame = 0
Query:  149 PANTGT-FGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVE-APIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEESLDRS----FSRQRGFRKKVK 630
            PA  G+ FG ++ F  LG+ P  V +L+      +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + MV VDEADMLLEG Y + ++ I  AF+RAD+    +    TQY+  AAT+P  G KSV +++ +  P A    TD +H+H   L Q FVE + +  DE+   +  +L+RL++ G          G E             K M+F NTAQ A RV +AL + + P+     F  ++   DR  NL  F      +LVCTD ASRGLDI  V  VIQ +FA + + HLHR+GR  R G+ G+A+NF+ +    LV  ++ A E+ +  S    FSR+R FRKK++
Sbjct:  207 PACRGSPFGDRLVFPRLGVFPDFVDSLSNFNVREATEIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKTDLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTTITAQLMLGTYARWPFGTLAIPTSPDLVVCTPPVLAPFAKGGHTKDLTPFREIQMVAVDEADMLLEGGYRQTMEGIFTAFRRADRQCTAKGLRRTQYIFTAATIPDRGPKSVRKIISRLCPKATFFCTDNLHQHRQLLEQEFVEVSSLAPDEE--RIHLLLRRLKDLG----------GHE-------------KIMVFCNTAQTARRVFEAL-EKELPAARPKLFSSEMDQKDRSFNLGVFARGKSKILVCTDAASRGLDIAGVTLVIQYDFALSAITHLHRVGRVARGGQPGKALNFFLDSQKVLVGVIRKAAEDPVSTSVADAFSRKRSFRKKMR 646          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: GAX15979.1 (hypothetical protein FisN_22Hh166 [Fistulifera solaris])

HSP 1 Score: 221.9 bits (564), Expect = 6.200e-54
Identity = 176/541 (32.53%), Postives = 266/541 (49.17%), Query Frame = 0
Query:  157 AQVPFASLGLSPWLVSALNAAGKPI----STHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPF--AIVLVPNRQLSEQVLQMGRELL-----------TQQKGEGEREGRPRIDALAGSVEE----WPFHPKTRPAPDVLVCTPATL---SFFDRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADK-LHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSV----PLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRA--GREGRAVNFYDEGSTDLVESLQLAGEE---------------------------------SLDRSFSRQRGFRKKVKKYGR 634
            +Q  + SL  SP L+  L +    I     + IQ+L+  S+ EG +V++G+ETG GKTLAYLLP ++                        A L         + RLT  +  +     F  A+VLVPN++L +QV++M   L              Q+ + + +   R+  L G ++E     PF   T+P  D++V TPA L   +   + + +F+ +  ++VDEADMLL+G Y R L+++L+ F+RAD+ +H     P TQYV  AATLP  GL+SV+  ++K+FPSA  + T   + H+ K   L     I L+ K   +K V++ L +  +    ++G EG+              K MIFLN+ Q       AL +A    + +H  +   +R E L  FR ++      +LVCTDLASRGLD+PDV  VIQ++FA NVV HLHR+GR  R    ++GR + F+ E    LV  ++ A E+                                  + ++FSR+RGF KK KK  R
Sbjct:   35 SQNDWESLITSPVLLQRLQSELPTIYRSGPSEIQSLAFSSVQEGRNVILGAETGTGKTLAYLLPWMN------------------------AVL---------EERLTKDSNQWDAVQAFAKAVVLVPNKELVQQVVRMALPLAGGPSALVYDGKVLQENDNDDDSLIRLAVLPGGMDEPNDFAPFRRCTKPL-DLIVSTPAALGPWALNPKHVAIFADIQSLIVDEADMLLDGGYVRALEQVLMGFRRADRTIHSTEQRP-TQYVFVAATLPDSGLRSVDAYLKKKFPSAEYITT--ANLHNAKHEGLLETQWIALESKQERMKAVVEMLSQHQQ----QQGSEGE--------------KIMIFLNSVQDVENASAALQRAGVSVLRYHAKLNLQERTETLEAFRQSTANGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHLHRMGRCGRRNHSKKGRGIIFFSEQEEPLVNVVRQAEEQQEKMTLQQDVMEELTDDFDADENASQPSPSDLAKVQQAFSRKRGFTKKRKKLRR 520          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_023973742.1 (DEAD-box ATP-dependent RNA helicase 22-like, partial [Physeter catodon])

HSP 1 Score: 216.5 bits (550), Expect = 2.600e-52
Identity = 147/394 (37.31%), Postives = 202/394 (51.27%), Query Frame = 0
Query:  256 DNRLTPLAEDFPW--ETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFFDR------DIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVE--APIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVA----FHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAG----EESLDRSFSRQRGFRKKVKK 631
            ++  T   ED P     P+AI++VP R+L+ QV    R L         R+       L GS   WPF   T P +PDV++CTP  L+ F R       + LF +  M+V+DEADMLLEG Y + ++ + + F++AD++     +  TQYV AAAT+P  G  S+ + +    P A  + T+ +H    +L Q FVE  A     +K  +L   L++LQE   A                        + MIF NTAQ A +V   L Q   P  A    F  D+   DR  NL  F      +LVCTD ASRGLDI  V  VIQ +FA N V HLHR+GR  RAG+ GRA+NFY+  S  LV++++ A       SL  +FSR+R FRK +K+
Sbjct:    7 EDEATMKREDLPLPRHYPYAIIVVPTRELALQVAAWSRRLC--------RKSPVSTQLLLGSYARWPFGTLTLPTSPDVILCTPQVLAGFTRGGGYKKKLSLFEQAQMLVIDEADMLLEGGYKKLMESVFLEFRKADRMLAATGKRRTQYVFAAATIPERGPVSIRKTIDVLCPGASFLCTNSLHHQRRELQQEFVEIRADASFGDKTDLL---LEKLQEIPLA-----------------------ERVMIFCNTAQTAKQVLQVL-QKTLPPAANPKLFSSDLNQQDRARNLGLFAREKSKVLVCTDAASRGLDIVGVTTVIQFDFALNAVTHLHRVGRVARAGKFGRAINFYEPVSKPLVDAVRQAAYDPTRRSLADTFSRRRSFRKNLKR 365          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_003881282.1 (putative RNA helicase [Neospora caninum Liverpool] >CBZ51249.1 putative RNA helicase [Neospora caninum Liverpool])

HSP 1 Score: 216.1 bits (549), Expect = 3.400e-52
Identity = 139/378 (36.77%), Postives = 200/378 (52.91%), Query Frame = 0
Query:  267 PWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+         TQY+ AAAT+P  G KSV +++ +  P A    T+ +H+H  +L Q FVE P G+  DE++ +L   L++L           GG+                K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R    GRA+NFY +    LV+ ++ A  +    S+  +FSR+R FRKK++
Sbjct:   20 PRHHPYAVVIVPTRELALQVVAWARRLC--------RKSPITAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAASGRRRTQYIFAAATIPDRGPKSVRKIISRLCPRATFFCTESLHQHREQLQQEFVEVPAGISDDERVNLLLSRLKKL-----------GGD---------------DKVMIFCNTAQIARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRILVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEHPGRALNFYFDSQRALVDVIRRAARDPVSPSVADAFSRKRSFRKKLR 362          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: GAX11481.1 (hypothetical protein FisN_22Lh166 [Fistulifera solaris])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-51
Identity = 172/538 (31.97%), Postives = 256/538 (47.58%), Query Frame = 0
Query:  157 AQVPFASLGLSPWLVSALNAAGKPI----STHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKG----------EGEREGRPRIDALAGSVEE----WPFHPKTRPAPDVLVCTPATL---SFFDRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADK-LHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSV----PLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRA--GREGRAVNFYDEGSTDLVESLQLAGEE---------------------------------SLDRSFSRQRGFRKKVKKYGR 634
            +Q  + SL  SP L+  L +    I     + IQ+L+  S+ EG +V++G+ETG GKTLAYLLP ++           +Q   ++ Y +                               A+VLVPN++L +QV++M   L                  E +   R+  L G ++E     PF   T+P  D++V TPA L   +   + +  F+ +  ++VDEADMLL+G Y R L+++L+ F+RAD+ +H     P TQYV  AATLP  GL+SV+  ++K+FPSA  + T   + H+ K   L     I L+ K   +K V++ L     +L  ++     E             K MIFLN+ Q       AL +A    + +H  +   +R E L  FR ++      +LVCTDLASRGLD+PDV  VIQ++FA NVV HLHR+GR  R    ++GR + FY E    LV  ++ A E+                                  + ++FSR+RGF KK KK  R
Sbjct:   35 SQNDWTSLITSPILLQRLQSELPTIYRSGPSEIQSLAFSSLQEGRNVILGAETGTGKTLAYLLPWMNAVLEERARTNSSQWDAVQAYAK-------------------------------AVVLVPNKELVQQVVRMALPLAGGPSALMYDGKVLQENDEDDSLIRLAVLPGGMDEPNDFAPFRRCTKPL-DLIVSTPAALGPWALNPKHVAFFADIQTLIVDEADMLLDGGYVRALEQVLMGFRRADRTIHSTEQRP-TQYVFVAATLPDSGLRSVDAYLKKKFPSAEYITT--ANLHNAKHEGLLETQWIALESKQERMKAVVEML-----SLHQQQHDTDGE-------------KIMIFLNSVQDVENASAALQRAGISVLKYHAKLNLQERTETLETFRQSTAKGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHLHRMGRCGRRNHSKKGRGIIFYSEKEEPLVNVVRQAEEQQEKMILQQDVMEELTDYSDAEENVTQPLSSDLAKVQQAFSRKRGFTKKRKKLRR 519          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_002180275.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48466.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 212.6 bits (540), Expect = 3.800e-51
Identity = 177/540 (32.78%), Postives = 258/540 (47.78%), Query Frame = 0
Query:  161 FASLGL-SPWLVSALNAAGKPISTHIQALSLPSILEG-NDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGREL-------------------LTQQKGEGEREGRPRIDALAGSVEE----WPFHPK-----TRPAPDVLVCTPATLSFF---DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMH--RHHPKLTQ-LFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFR---------SNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAG-REGRAVNFYDEGSTDLVESLQ-----------------LAGEE---SLDRSFSRQRGFRKKVKKYGRD 635
            FASLG+ SP L+  + A G    T +QA +   I     DV++G+ETG GKTLAYLLP+LD                    ++RKA            +  T L  D+      AI+LVPN++L +QV++M   L                   L         +   R+  L G + E     PF        + P  D+++ T A L        +I +F  +  +VVDEADMLL+G Y R L+ +L+ F+RAD+L      P TQ+V  AATLP +G +SV+  ++K+FP   +V    MH  RH+    Q L++E     + K   ++K+++            EGG   E             K M+FLN+       + AL +A    + +H  +   +R   L +FR           +VP+LVC+DLA+RG+D+P V  V+Q++FA NVV HLHR+GR  RAG R GR + FYD    +LVE +Q                 LAG+E   S+  +FSR+RGF KK KK  ++
Sbjct:   92 FASLGIQSPVLLERIEALGLRRPTAVQAAAYRDISAAEGDVMVGAETGTGKTLAYLLPLLD------------------DILQRKA---------NAADTNTSLGYDY----ARAIILVPNKELVQQVVRMAVSLSGGRQSLVYGGSALPDAANLPPTDDATLAKDTVRLAILPGGLRELQDFQPFRKAIGLGGSEPPVDLVISTLAALGVLGLKPANIDMFGDIRTLVVDEADMLLDGGYIRPLENVLMGFRRADRLDPTLGVPRTQHVFVAATLPDFGTRSVDAYLKKKFPYVSQVTMAGMHNARHYGLREQTLWMEE----ESKKTRMEKLVELF-----GTPVTEGGLQDE-------------KVMVFLNSVDDVEGANQALQRAGLKVLPYHAKVSLDERTATLDRFRRYDPKSPDGEGTVPILVCSDLAARGIDVPGVNTVVQLQFAGNVVAHLHRMGRCGRAGQRTGRGIVFYDAKERELVEVVQQAEIQQNRMVLPGDVIELAGDEQDGSVKNAFSRKRGFSKKRKKLRKE 578          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_012479438.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X2 [Gossypium raimondii] >KJB31317.1 hypothetical protein B456_005G186000 [Gossypium raimondii])

HSP 1 Score: 208.0 bits (528), Expect = 9.300e-50
Identity = 174/565 (30.80%), Postives = 260/565 (46.02%), Query Frame = 0
Query:  149 PANTG--TFGAQ--VPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRP--RIDALAGSVEEWPFHPKTRPAPDVLVCTP-ATLSFFD----RDIGLFSRVGMVVVDEADMLLEGDYGRHLDRIL-------------------------------------------------------------------VAFKRADKLHVIRS-EPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGE--ESLDRSFSRQRGFRKKVKKYG 633
            P NTG  TF A+  V + SLGLS  +  AL++AG    + +QA  +PSIL G DVVI +ETG+GKT  YL+P++D  +                            AG + DN L            F+IVL PN  L EQV++M  +L       G+ +GRP  R+ A+ G  + WP +      PDV+V TP A L+  D            V  VV DEADMLL G +  H+ R++                                                                      KR D   V ++ E S QY+  AATLP  G K+   +++K  P A  V+   +H+H+P+L + ++E  +  D ++  L + +++   K     A + G G               +TM+F NT +A   V + L +A      +H  +  ++R E+L  FR+    + VCTD A+RG+DIP+V  VIQ +FA + V  LHR+GR  RAG+ G   + Y+E + DLV +++ AG+  + ++ +FSR+R FR K+KK G
Sbjct:   66 PKNTGTDTFFAEDTVSWQSLGLSDRISQALSSAGFDRPSLVQAACMPSILSGKDVVIAAETGSGKTYGYLVPLIDKLY---------------------------GAGHDADNDLEKATVS---SRTFSIVLCPNVLLCEQVVRMANDL------SGD-DGRPLLRVAAVCGR-QGWPVN-----EPDVIVSTPVALLNSIDPKKHHRSDFIRAVKYVVFDEADMLLSGGFENHVIRLIHMLRFDEKLLSRVNKAGSENPVEPSSDSVSHFDFEGEEDMQNESISEAEEMSEGDVDAEDLMEETQTSPVKRKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAVLKKMVPDANWVSGSYLHQHNPRLKEKWIE--VTTDNQVDALIEAVKQFGSK-----ASDHGAG-------------VSRTMVFGNTVEAVEAVANILQRAGIECYRYHTGLSLAERAESLDDFRAKG-GIFVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRVGRTARAGQFGVVTSLYNESNRDLVNAIRAAGKLGQPVEAAFSRKRSFRNKLKKRG 566          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_017607750.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X2 [Gossypium arboreum])

HSP 1 Score: 207.2 bits (526), Expect = 1.600e-49
Identity = 173/565 (30.62%), Postives = 260/565 (46.02%), Query Frame = 0
Query:  149 PANTG--TFGAQ--VPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRP--RIDALAGSVEEWPFHPKTRPAPDVLVCTP-ATLSFFD----RDIGLFSRVGMVVVDEADMLLEGDYGRHLDRIL-------------------------------------------------------------------VAFKRADKLHVIRS-EPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGE--ESLDRSFSRQRGFRKKVKKYG 633
            P NTG  TF A+  V + SLGLS  +  AL+ AG    + +QA  +PSIL G DVVI +ETG+GKT  YL+P++D  +                            A  + DN L            F+IVL PN  L EQV++M  +L       G+ +GRP  R+ A+ G  + WP +      PDV+V TP A L+  D            V  VV DEADMLL G +  H+ R++                                                                      KR D + V ++ E S QY+  AATLP  G K+   +++K FP A  V+   +H+H+P+L + ++E  +  D ++  L + +++   K     A + G G               +TM+F NT +A   V + L +A      +H  +  ++R E+L  FR+    + VCTD A+RG+DIP+V  VIQ +FA + +  LHR+GR  RAG+ G   + Y+E + DLV +++ AG+  + ++ +FSR+R FR K+KK G
Sbjct:   66 PKNTGTDTFFAEDTVSWQSLGLSDRISQALSNAGFDRPSLVQAACMPSILSGKDVVIAAETGSGKTYGYLVPLIDKLY---------------------------GARHDADNDLEKATVS---SRTFSIVLCPNVLLCEQVVRMANDL------SGD-DGRPILRVAAVCGR-QGWPVN-----EPDVIVSTPVALLNSIDPKKHHRSDFIRAVKYVVFDEADMLLSGGFENHVIRLIHMLRFDEKLLSRVNKAGSENPVEPSSDSVSHFDFEGEEDMQNESISEAEEMSEGDVDAQDLMEETQTSTVKRKDWMRVRKNYERSKQYIFVAATLPVNGKKTAGAVLKKMFPDANWVSGSYLHQHNPRLKEKWIE--VTTDNQVDALIEAVKQFGSK-----ALDHGAG-------------VSRTMVFGNTVEAVEAVANILQRAGIECYRYHTGLSLAERAESLDDFRAKG-GIFVCTDAAARGVDIPNVSHVIQADFATSAIDFLHRVGRTARAGQFGVVTSLYNESNRDLVNAIRAAGKLGQPVEAAFSRKRSFRNKLKKRG 566          
The following BLAST results are available for this feature:
BLAST of NO01G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EPR59668.16.600e-6435.57DEAD/DEAH box helicase domain-containing protein [... [more]
PHJ25613.16.600e-6436.57dead deah box helicase domain-containing protein, ... [more]
PFH31979.11.300e-6235.48DEAD/DEAH box helicase domain-containing protein [... [more]
GAX15979.16.200e-5432.53hypothetical protein FisN_22Hh166 [Fistulifera sol... [more]
XP_023973742.12.600e-5237.31DEAD-box ATP-dependent RNA helicase 22-like, parti... [more]
XP_003881282.13.400e-5236.77putative RNA helicase [Neospora caninum Liverpool]... [more]
GAX11481.11.000e-5131.97hypothetical protein FisN_22Lh166 [Fistulifera sol... [more]
XP_002180275.13.800e-5132.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_012479438.19.300e-5030.80PREDICTED: DEAD-box ATP-dependent RNA helicase 22 ... [more]
XP_017607750.11.600e-4930.62PREDICTED: DEAD-box ATP-dependent RNA helicase 22 ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008302NSK008302Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00820.1NO01G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576051gene_56Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100780g2gene1602Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00820.1NO01G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00820 ID=NO01G00820|Name=NO01G00820|organism=Nannochloropsis oceanica|type=gene|length=2746bp
CGTCACTCTATCGTTGCTTTATTTACGTTTGGGTTCGCCTATCGCATTCC
AATAAAGGCTATGGACAATTTTTCACATTGCATCAGCAGTGGCAACTTGG
CGTGGCCCAGAAGGTAATCAGGAGCATTCTCACCTCCAGGAAGCTTTGAA
AAACAAACCCTCTTCAGTCCTGTCATGCTCGAGCAAGCAGTCGGGCAAGG
CTTGCGGCGGCATGGTGATTGCCCTAGGACGCCCACTTTAGATCTGCTCG
CGGCGGGCATGAGCCTAGATATAGAGGTAGGTGCCAAGGGAGCAGGAGTC
CCCCTGTCTCGCTCAGATAAACCCAAGAGGCCATGGTTACATGTCATTTA
CGCGGACAAGCTCGTCAGAATCAAGGTTGAAAGACGACGTACGCGCCTGA
GCGCGGTGATGACGACTCGTCGGATGTTGCCTCGCTCCCGAAATGTGGCC
TCTCTCACACTCATCTCATTTCTCCCCGGCACACCATACAACGATACGCT
GACACAGCTGCAGAGGAGACGCAATGCGCGTCTTTTCGTCGAGGTCACGG
GCTTGGGGCCTGGAATGGCGCACCACTACAAACGGTAGTGCAACAGCAAC
TTTCGCCTTGCCCCACTGCACCAGTACCAGTAGCCGCCCAGCCCAACCAT
CATCAGGCTCGACCACCACCACCACCACGATGATCAGCTTGGTCTACCTT
CTGCTATTTCACCATCACGGCGTCATGGCAACGGTCGCCACGAACCCCTT
CGGACGCAGTAGCAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCA
CGGCCTTTCTATGGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACC
AGCAGCAGCCGGCGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCA
CATGCTTACACAAAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGT
CCTTTGACGAGGACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTC
CCCTTCGCCTCCCTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGC
CGCAGGAAAACCCATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCA
TCCTGGAGGGCAACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAG
ACGCTGGCCTACCTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCC
CGCTCGGACCGAGGCCCAGATACGCGAGATGGAATATTATATGGAGCGGA
AAGCCGCATTGAAAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTG
ACGCCTTTGGCGGAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCT
CGTCCCCAACAGGCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGT
TGTTGACACAACAGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATC
GATGCGTTGGCGGGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACG
GCCGGCGCCGGATGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCG
ATAGGGACATTGGGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAG
GCCGACATGCTGCTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTT
GGTGGCCTTCAAACGgtgaggaaaagggagggagggagaaagggttatca
tttcataaactactcacctatcccccattccgtcccttgctccctcaagC
GCCGATAAACTCCACGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCT
GGCGGCGGCCACTCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCG
TCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAATACGGACATGATGCAC
AGGCACCATCCGAAGCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACT
GGATGAAAAGATTGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGA
AGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGAC
GAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCT
CAACACGGCCCAAGCGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAG
ACTTCCCCTCCGTTGCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAA
GAGAACCTGCGGCAATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTAC
AGACCTGGCGTCTCGGGGCTTGGACATACCGGACGTTAAGCAGGTGATTC
AAGTTGAATTTGCGCCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGG
GCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGG
GTCGACGGATTTGGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGG
ATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATAC
GGGCGGGATTATTATAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTG
GGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTG
AGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGA
GGATGACGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACCAGA
AAGAGGGCGGTTGGAATTGGTGGCTTGAGAAGGGAATAAGAAAAGC
back to top

protein sequence of NO01G00820.1

>NO01G00820.1-protein ID=NO01G00820.1-protein|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MRVFSSRSRAWGLEWRTTTNGSATATFALPHCTSTSSRPAQPSSGSTTTT
TTMISLVYLLLFHHHGVMATVATNPFGRSSSSSSGSRSSRGSTAFLWLPQ
QQHRLLSTTSSSRRHHPHEYWPTPAHMLTQRRHYATAGSSSSSFDEDLPA
NTGTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVV
IGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGA
AGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGE
GEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFDRDIGLFS
RVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAA
ATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDE
KIGMLKKVLQRLQEKGRALAAKEGGEGKEDDEDAASLPLPLPKTMIFLNT
AQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDL
ASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGST
DLVESLQLAGEESLDRSFSRQRGFRKKVKKYGRDYYRKPGGAYRGEGWEE
EAKGRRVKGGKVVFEEGREGEEREEEGRRGGG*
back to top
Synonyms
Publications