NO01G00820, NO01G00820 (gene) Nannochloropsis oceanica

Overview
NameNO01G00820
Unique NameNO01G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2746
Alignment locationchr1:206773..209518 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase DEAD-box type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:206773..209518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO01G00820 vs. NCBI_GenBank
Match: EWM29012.1 (RNA helicase DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 671.0 bits (1730), Expect = 3.900e-189
Identity = 349/496 (70.36%), Postives = 405/496 (81.65%), Query Frame = 0
Query:  146 EDLPANTGTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFDRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEESLDRSFSRQRGFRKKVKKYGRDYYRKPGG 642
            EDL ANTGTFG  +PFA+LGLSPWL +AL+ AGK  STHIQAL+LP+IL G +VVIGSETGAGKTLAYLLPV++LAHRA  ART  + + + YY ER+ ALK GA G E     + LAED+PWE PFAIVLVPN QLSEQVL+M  E+L    G+GE E   R++AL GSV+ WP+   +R APDVLVCTPATLS FDR++ LF  V ++VVDEADMLLEGDYGRHL+RILVAFKRADKLH  RSEP TQYVLAAATLP+YGLKSVEELV+KRFPSA+RV+TD+MH+HHP+LTQ+FVEAP  L+ KI ML +VL++L+ KG      EGG     XXXXXXX     KTM+FLNTA AAAR   A+  A FPSVAFHK++R  +RE NL++FRSN VPLLVCTDLA+RGLDIPDV+QV+QVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD G+ DLVESLQLA  ++L+RSFSRQRGFRKK+KKYGRDYYR PGG
Sbjct:  140 EDLTANTGTFGENIPFAALGLSPWLTAALSGAGKATSTHIQALALPTILAGENVVIGSETGAGKTLAYLLPVMELAHRAHAARTAMKEKALAYYQERRGALKEGAGGRERVGEYSSLAEDYPWEAPFAIVLVPNGQLSEQVLRMAGEVL----GQGEGEENVRVEALKGSVDVWPYRVGSRAAPDVLVCTPATLSSFDREVNLFGEVNILVVDEADMLLEGDYGRHLERILVAFKRADKLHTARSEPLTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGXXXXXXXXXXXXATILPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDLGAHDLVESLQLAQADTLERSFSRQRGFRKKIKKYGRDYYRLPGG 631          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: CBJ49194.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 329.7 bits (844), Expect = 2.100e-86
Identity = 209/505 (41.39%), Postives = 283/505 (56.04%), Query Frame = 0
Query:  155 FGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFD--RDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHV-----------IRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEES-LDRSFSRQRGFRKKVKKYGRDYYRKPGGAYRG 646
            FG +VPF+ LGLSP L   L A G   ST +QA ++P IL G D+++G+ETG+GKTLAYLLP++           E  +R      +    L G A GW       P+  D        +VLVPN++L +QV  + + +L     +G         A  GS  E+PF P  +PAP +LVCTP+ L  +   + I LF +   +V+DEADML+EG Y + LD ILVAF+RAD++ V            R    TQYVLAAATLPTYGLKSV++ +++ FP+A ++    MHRHHP + Q FVE    + +KI   + V+  L++                            +TM+F NTA +  R ++ALA+  F  V +HKDI   +R  NL   RS    +LVCTDLA+RG+D+P V  ++Q+E A NVVQHLHR+GRA       +A NFYD+ + DLV S+   GE S LD SFSRQRGFR+K KKYG      P   Y+G
Sbjct:  215 FGDRVPFSDLGLSPALCGHLEALGIGGSTAVQAAAVPGILSGEDMIVGAETGSGKTLAYLLPIV-----------ERVLRGQAVAKDLPDELLGNARGW-------PMFPD-------VVVLVPNKELCDQVHSVLKGILKALNADGIT--GVTAAAKYGSSYEYPFSP-NKPAPSILVCTPSFLHKYTNMKAIPLFCKATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKI---QAVIDLLRD--------------------TVSDADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAXXXXXXXKATNFYDDLTKDLVNSITEVGEGSRLDGSFSRQRGFRRKFKKYG------PSRRYQG 662          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: CEM01595.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 306.6 bits (784), Expect = 1.900e-79
Identity = 200/497 (40.24%), Postives = 273/497 (54.93%), Query Frame = 0
Query:  155 FGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFD-----RDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLD----EKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLV----ESLQLAGEES-----LDRSFSRQRGFRKKVKKYGR 634
            +G  VPF+SL L P LV  L+  GK  +T IQAL +PSIL G+DV++G+ETG+GKTLAYL+P+LD             +RE E   E +A    G+ G    +R+ P           A+V+VPNR+L +QV +  +EL         R      + + G  E WPF P  +PAPDVL+CTP  L  F      +DI LF  V  +VVDEAD+LL+G Y + L+ +L  F+R+      R    TQ+++ AATLP  G  SV+  + +RFP A+RV   +MH+H P + Q F+  PIG D    +++ ML   +  +Q       A  GGE   D            KT+IF NT  +A  V +AL     P V  H D+R+++R  NL  FR     +LVCTDLA+RGLDIP +  VIQ +FAPNVV HLHR+G           +NFY + S DLV    ESL++A E       L+++FSR R  RKK++K  R
Sbjct:   58 YGEYVPFSSLRLHPSLVQQLSQTGKDTATLIQALGIPSILTGDDVIVGAETGSGKTLAYLVPLLD-----------RLLRENE--REGEAEASDGSGGNTDRSRMYPR----------AVVMVPNRELCDQVYRWAQEL--------ARPLGVTTEMVWGGYESWPFTP-AQPAPDVLICTPLFLGRFTKGGCVKDISLFQSVDTLVVDEADLLLDGGYKKDLEAVLTVFRRSG-----RQGAPTQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFI--PIGYDASTRDRLNMLVDKVTEMQRD----RASRGGEEAVD----------VGKTIIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGXXXXXXXXXXXINFYGKDSEDLVSMIQESLKVAEERGSDGGLLEQAFSRNRSLRKKLRKQER 501          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: CEL68564.1 (TPA: RNA helicase, putative [Neospora caninum Liverpool])

HSP 1 Score: 258.1 bits (658), Expect = 7.900e-65
Identity = 174/489 (35.58%), Postives = 254/489 (51.94%), Query Frame = 0
Query:  156 GAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G ++ F  LG+ P  V AL+  G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+         TQY+ AAAT+P  G KSV +++ +  P A    T+ +H+H  +L Q FVE P G+  DE++ +L   L++L           GG+                K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R    GRA+NFY +    LV+ ++ A  +    S+  +FSR+R FRKK++
Sbjct:  227 GDRLVFPRLGVFPDFVEALDNFGVRQATEIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKTELPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKSPITAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAASGRRRTQYIFAAATIPDRGPKSVRKIISRLCPRATFFCTESLHQHREQLQQEFVEVPAGISDDERVNLLLSRLKKL-----------GGD---------------DKVMIFCNTAQIARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRILVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEHPGRALNFYFDSQRALVDVIRRAARDPVSPSVADAFSRKRSFRKKLR 658          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: KFG62871.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii RUB])

HSP 1 Score: 257.7 bits (657), Expect = 1.000e-64
Identity = 176/492 (35.77%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDAQKALVDVIQRAARDPVSPSVAEAFSRKRSFRKKLE 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_008887923.1 (DEAD/DEAH box helicase domain-containing protein [Hammondia hammondi] >KEP61516.1 DEAD/DEAH box helicase domain-containing protein [Hammondia hammondi])

HSP 1 Score: 256.9 bits (655), Expect = 1.700e-64
Identity = 177/491 (36.05%), Postives = 253/491 (51.53%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKV 629
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L RL++ G                          K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      LLVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK+
Sbjct:  221 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATEIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPITAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQTMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERLSLL---LHRLKKLG-----------------------GNDKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRLLVCTDAASRGLDIAGVSLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYFDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKL 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: XP_002368519.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii ME49] >EPT28092.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii ME49] >ESS34008.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii VEG] >CEL76075.1 TPA: RNA helicase, putative [Toxoplasma gondii VEG] >KYF44955.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii ARI] >KYK69740.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 256.1 bits (653), Expect = 3.000e-64
Identity = 176/492 (35.77%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPNFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKLE 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: KFG30878.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii p89])

HSP 1 Score: 256.1 bits (653), Expect = 3.000e-64
Identity = 176/492 (35.77%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKLE 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: KFH05883.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii MAS] >PIL95851.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii COUG] >PUA90370.1 DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii TgCATBr9])

HSP 1 Score: 256.1 bits (653), Expect = 3.000e-64
Identity = 176/492 (35.77%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKLE 654          
BLAST of NO01G00820 vs. NCBI_GenBank
Match: KFH12674.1 (DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii VAND])

HSP 1 Score: 256.1 bits (653), Expect = 3.000e-64
Identity = 176/492 (35.77%), Postives = 254/492 (51.63%), Query Frame = 0
Query:  153 GTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRP-APDVLVCTPATLSFF-----DRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGL--DEKIGMLKKVLQRLQEKGRALAAKEGGEGKEDXXXXXXXXXXXXKTMIFLNTAQAAARVHDALAQADFPSV---AFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEE----SLDRSFSRQRGFRKKVK 630
            G  G ++ F  LG+ P  V AL   G   +T IQ LS+P+ILEG D VIG+ETG+GKTL Y++ ++              +++M +  +  AA+            L       P   P+A+V+VP R+L+ QV+   R L         R+       + G+   WPF     P +PD++VCTP  L+ F      +D+  F  + M+ +DEADMLLEG Y + ++ I  AF+RAD+      +  TQY+ AAAT+P  G KSV +++ +  P A    TD +H+H  +L Q FV+ P G   DE++ +L   L++L           GG                 K MIF NTAQ A  + +AL +A  P+     F  +I   DR  NL  F      +LVCTD ASRGLDI  V  V+Q +FA + V HLHR+GR  R  + GRA+NFY +    LV+ +Q A  +    S+  +FSR+R FRKK++
Sbjct:  220 GHSGGRLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGLVQ----------NILLQKMIHEKKEDAAV------------LQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLC--------RKTPVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADRQSAESGKRRTQYIFAAATIPDRGPKSVRKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKL-----------GGS---------------DKVMIFCNTAQTARSLFEALEKA-LPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDTQKALVDVIQRAARDPVSPSVADAFSRKRSFRKKLE 654          
The following BLAST results are available for this feature:
BLAST of NO01G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29012.13.900e-18970.36RNA helicase DEAD-box type [Nannochloropsis gadita... [more]
CBJ49194.12.100e-8641.39DEAD box helicase [Ectocarpus siliculosus][more]
CEM01595.11.900e-7940.24unnamed protein product [Vitrella brassicaformis C... [more]
CEL68564.17.900e-6535.58TPA: RNA helicase, putative [Neospora caninum Live... [more]
KFG62871.11.000e-6435.77DEAD/DEAH box helicase domain-containing protein [... [more]
XP_008887923.11.700e-6436.05DEAD/DEAH box helicase domain-containing protein [... [more]
XP_002368519.13.000e-6435.77DEAD/DEAH box helicase domain-containing protein [... [more]
KFG30878.13.000e-6435.77DEAD/DEAH box helicase domain-containing protein [... [more]
KFH05883.13.000e-6435.77DEAD/DEAH box helicase domain-containing protein [... [more]
KFH12674.13.000e-6435.77DEAD/DEAH box helicase domain-containing protein [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008302NSK008302Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00820.1NO01G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576051gene_56Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100780g2gene1602Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00820.1NO01G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00820 ID=NO01G00820|Name=NO01G00820|organism=Nannochloropsis oceanica|type=gene|length=2746bp
CGTCACTCTATCGTTGCTTTATTTACGTTTGGGTTCGCCTATCGCATTCC
AATAAAGGCTATGGACAATTTTTCACATTGCATCAGCAGTGGCAACTTGG
CGTGGCCCAGAAGGTAATCAGGAGCATTCTCACCTCCAGGAAGCTTTGAA
AAACAAACCCTCTTCAGTCCTGTCATGCTCGAGCAAGCAGTCGGGCAAGG
CTTGCGGCGGCATGGTGATTGCCCTAGGACGCCCACTTTAGATCTGCTCG
CGGCGGGCATGAGCCTAGATATAGAGGTAGGTGCCAAGGGAGCAGGAGTC
CCCCTGTCTCGCTCAGATAAACCCAAGAGGCCATGGTTACATGTCATTTA
CGCGGACAAGCTCGTCAGAATCAAGGTTGAAAGACGACGTACGCGCCTGA
GCGCGGTGATGACGACTCGTCGGATGTTGCCTCGCTCCCGAAATGTGGCC
TCTCTCACACTCATCTCATTTCTCCCCGGCACACCATACAACGATACGCT
GACACAGCTGCAGAGGAGACGCAATGCGCGTCTTTTCGTCGAGGTCACGG
GCTTGGGGCCTGGAATGGCGCACCACTACAAACGGTAGTGCAACAGCAAC
TTTCGCCTTGCCCCACTGCACCAGTACCAGTAGCCGCCCAGCCCAACCAT
CATCAGGCTCGACCACCACCACCACCACGATGATCAGCTTGGTCTACCTT
CTGCTATTTCACCATCACGGCGTCATGGCAACGGTCGCCACGAACCCCTT
CGGACGCAGTAGCAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCA
CGGCCTTTCTATGGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACC
AGCAGCAGCCGGCGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCA
CATGCTTACACAAAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGT
CCTTTGACGAGGACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTC
CCCTTCGCCTCCCTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGC
CGCAGGAAAACCCATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCA
TCCTGGAGGGCAACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAG
ACGCTGGCCTACCTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCC
CGCTCGGACCGAGGCCCAGATACGCGAGATGGAATATTATATGGAGCGGA
AAGCCGCATTGAAAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTG
ACGCCTTTGGCGGAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCT
CGTCCCCAACAGGCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGT
TGTTGACACAACAGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATC
GATGCGTTGGCGGGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACG
GCCGGCGCCGGATGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCG
ATAGGGACATTGGGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAG
GCCGACATGCTGCTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTT
GGTGGCCTTCAAACGgtgaggaaaagggagggagggagaaagggttatca
tttcataaactactcacctatcccccattccgtcccttgctccctcaagC
GCCGATAAACTCCACGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCT
GGCGGCGGCCACTCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCG
TCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAATACGGACATGATGCAC
AGGCACCATCCGAAGCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACT
GGATGAAAAGATTGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGA
AGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGAC
GAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCT
CAACACGGCCCAAGCGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAG
ACTTCCCCTCCGTTGCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAA
GAGAACCTGCGGCAATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTAC
AGACCTGGCGTCTCGGGGCTTGGACATACCGGACGTTAAGCAGGTGATTC
AAGTTGAATTTGCGCCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGG
GCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGG
GTCGACGGATTTGGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGG
ATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATAC
GGGCGGGATTATTATAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTG
GGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTG
AGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGA
GGATGACGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACCAGA
AAGAGGGCGGTTGGAATTGGTGGCTTGAGAAGGGAATAAGAAAAGC
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protein sequence of NO01G00820.1

>NO01G00820.1-protein ID=NO01G00820.1-protein|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MRVFSSRSRAWGLEWRTTTNGSATATFALPHCTSTSSRPAQPSSGSTTTT
TTMISLVYLLLFHHHGVMATVATNPFGRSSSSSSGSRSSRGSTAFLWLPQ
QQHRLLSTTSSSRRHHPHEYWPTPAHMLTQRRHYATAGSSSSSFDEDLPA
NTGTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVV
IGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGA
AGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGE
GEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFDRDIGLFS
RVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAA
ATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDE
KIGMLKKVLQRLQEKGRALAAKEGGEGKEDDEDAASLPLPLPKTMIFLNT
AQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDL
ASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGST
DLVESLQLAGEESLDRSFSRQRGFRKKVKKYGRDYYRKPGGAYRGEGWEE
EAKGRRVKGGKVVFEEGREGEEREEEGRRGGG*
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Synonyms
Publications