NO01G00740, NO01G00740 (gene) Nannochloropsis oceanica

Overview
NameNO01G00740
Unique NameNO01G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length607
Alignment locationchr1:189009..189615 +

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Properties
Property NameValue
DescriptionMultifunctional methyltransferase subunit TRM112 homolog A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:189009..189615 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_001415861.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO94153.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 113.6 bits (283), Expect = 4.400e-22
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L   AKGVV GFPLKI  ++    + + +  F+ H+LP + +    +AAK++GL+    P  + +  A DEEFL+  H  L +VHV EG L+CPE+GR+F I  G+ +M++ ++EV
Sbjct:    1 MRLLAHNMLACNAKGVVNGFPLKIVPKETREVEVDFNAEFLTHMLPKMEWSAFVNAAKEIGLE--GLPSEIPDDAASDEEFLRTFHHALLEVHVEEGTLVCPESGRKFPINKGIPNMLLNEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: GAU93092.1 (hypothetical protein RvY_05080 [Ramazzottius varieornatus])

HSP 1 Score: 113.6 bits (283), Expect = 4.400e-22
Identity = 56/125 (44.80%), Postives = 85/125 (68.00%), Query Frame = 0
Query:    1 MRLLSHNVLRNTA-KGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            M+LL+HN+L + A KGV EG+PL+++A+ +E+R++E +  F+  LLP + +  L +AAKD G  +   P +L E  A  EEFLK LH  L +V V+ G LICPE+GR F +  G+ +M++K EE+
Sbjct:   29 MKLLTHNMLTSKAIKGVQEGYPLRVKAETVEIRESEFNKDFLVRLLPKIHYDALYAAAKDAG-HLDELPGTLPEDAASSEEFLKKLHHALLEVEVITGELICPESGRSFPVQNGIPNMLLKPEEI 152          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_018482107.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Raphanus sativus])

HSP 1 Score: 113.2 bits (282), Expect = 5.800e-22
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRL++HN+L    KGV  GFPLKIEA+++  ++ + +  F+RH+   + +  L  AA+ LG   +  PE    A A+DE  LK LH  L ++H+ EGAL+CPETGRRF +  G+ +M++ ++EV
Sbjct:    1 MRLITHNMLSCNIKGVANGFPLKIEAERVIEKEVDFNPDFLRHMFAKIEWKALVEAARSLG--YSELPEDSPAAAAEDESLLKKLHHALLELHLEEGALVCPETGRRFPVTKGIPNMLLHEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_003056490.1 (methyltransferase-associated protein [Micromonas pusilla CCMP1545] >EEH59866.1 methyltransferase-associated protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 111.7 bits (278), Expect = 1.700e-21
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L +  KG   GFPLK+E    E R TE D  F+ H LP L++   R+AA+ LG+D    P +  E      EFL+  H  L ++ V EG LICPETGRRF +  G+ +MM+ ++EV
Sbjct:    1 MRLLTHNLLASNVKGTTAGFPLKLEVLVKEERSTEFDAAFLLHTLPKLNWSAFRAAAESLGVD--KLPSTYPERDELTNEFLRVFHHALLEIEVQEGYLICPETGRRFPVRKGIPNMMLNEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: CCA15208.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 111.7 bits (278), Expect = 1.700e-21
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRL++HN+L    KGV  GFPL+IEA++IEV ++E    F++ LL  L +    +AAK L L     P  LTE + +D++ +K++H  +FDVH+ +G LICPE+ R F IV G+ +M++ D+EV
Sbjct:    1 MRLVTHNMLMCNKKGVTNGFPLRIEAEEIEVIESEFRPEFLKKLLGKLDYFAFLNAAKSLKL-AEELPPCLTENVYEDDQAMKSIHHVMFDVHIKKGRLICPESNREFPIVDGIPNMLLNDDEV 123          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: PSC74830.1 (multifunctional methyltransferase subunit TRM112 At1g22270 [Micractinium conductrix])

HSP 1 Score: 111.7 bits (278), Expect = 1.700e-21
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEE 124
            M+LL+HN+L    KGV  GFP KIEA+++EV++ + +  F++H+ P + +  L  AA  +G  V   P   TE + +D+ F+K  H  L +VH+ EGAL+CPETGR+F +  G+ ++++ ++E
Sbjct:    1 MKLLTHNMLACHIKGVQNGFPFKIEAEKVEVQEADFEPDFLQHIFPRIQWAALCEAAAAMG--VEGLPAEATEEMLEDDAFMKKFHHALLEVHLQEGALVCPETGRKFPVSAGIPNLLLTEDE 121          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_022838230.1 (Uncharacterised protein family UPF0434/Trm112 [Ostreococcus tauri] >CEF96672.1 Uncharacterised protein family UPF0434/Trm112 [Ostreococcus tauri])

HSP 1 Score: 111.3 bits (277), Expect = 2.200e-21
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L   AKGVV GFPLKI  ++    +TE +  F+ H+LP + +    +AA+++G      P  + +  A +EEFL+A H  L +VHV EG L+CPE+GR+F I  G+ +M++ ++EV
Sbjct:    1 MRLLAHNMLACNAKGVVNGFPLKIVVKETRETETEFNAEFLVHMLPKMEWAAFVNAAREIG--AGELPGEIPDDAATNEEFLQAFHHALLEVHVEEGTLVCPESGRKFPINKGIPNMLLNEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_009380202.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 111.3 bits (277), Expect = 2.200e-21
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L    KGV  GFPL++EA++   ++ E +  F+RH+ P + +  L  AA+   +D    PE    A+   E+FL+  H  L ++HV EGAL+CPETGR F I  G+ +M++ ++EV
Sbjct:    1 MRLLTHNMLSCNIKGVTNGFPLRLEAEKWVEKEVELNADFLRHIFPKIEWKALAGAAR--AVDYCELPEEADAAMLDSEDFLRRFHHALLEIHVEEGALVCPETGRGFPITKGIPNMLLHEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_002964360.1 (multifunctional methyltransferase subunit TRM112 homolog A [Selaginella moellendorffii] >XP_002967941.1 multifunctional methyltransferase subunit TRM112 homolog A [Selaginella moellendorffii] >EFJ31288.1 hypothetical protein SELMODRAFT_88231 [Selaginella moellendorffii] >EFJ34693.1 hypothetical protein SELMODRAFT_438712 [Selaginella moellendorffii])

HSP 1 Score: 109.8 bits (273), Expect = 6.400e-21
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L    KGV +GFPL IE  ++E +  E +  F+RH  P + +   + AAK LG  V   PE +  ++  D++FL+  H  L ++H+ EG L+CPETGR+F +  G+ +M++ ++EV
Sbjct:    1 MRLLTHNMLSCNIKGVSKGFPLGIEVAKLETKTVEFNPQFLRHSFPKIEWKAFQEAAKTLG--VNDLPEQVEPSMLDDDDFLRRFHHALLEIHLEEGDLVCPETGRKFPVAKGIPNMLLNEDEV 122          
BLAST of NO01G00740 vs. NCBI_GenBank
Match: PIA52154.1 (hypothetical protein AQUCO_01000199v1 [Aquilegia coerulea])

HSP 1 Score: 109.4 bits (272), Expect = 8.300e-21
Identity = 49/124 (39.52%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L +  KGV  GFPL +E Q+   +  + +  F++++ P + +  L +AAK +G   A  PE +  ++ + E+FL+  H  L ++H+ EGALICPETGRRF++  G+ +M++ ++EV
Sbjct:    1 MRLLTHNMLSSNIKGVANGFPLGLEVQKFVEKQVDFNPDFLKNMFPKIEWKALVTAAKTMG--YAELPEEVESSMLESEDFLQKFHHALLELHLEEGALICPETGRRFAVTKGIPNMLLHEDEV 122          
The following BLAST results are available for this feature:
BLAST of NO01G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_001415861.14.400e-2242.74predicted protein [Ostreococcus lucimarinus CCE990... [more]
GAU93092.14.400e-2244.80hypothetical protein RvY_05080 [Ramazzottius varie... [more]
XP_018482107.15.800e-2242.74PREDICTED: multifunctional methyltransferase subun... [more]
XP_003056490.11.700e-2145.16methyltransferase-associated protein [Micromonas p... [more]
CCA15208.11.700e-2144.35conserved hypothetical protein [Albugo laibachii N... [more]
PSC74830.11.700e-2139.84multifunctional methyltransferase subunit TRM112 A... [more]
XP_022838230.12.200e-2142.74Uncharacterised protein family UPF0434/Trm112 [Ost... [more]
XP_009380202.12.200e-2141.13PREDICTED: multifunctional methyltransferase subun... [more]
XP_002964360.16.400e-2140.32multifunctional methyltransferase subunit TRM112 h... [more]
PIA52154.18.300e-2139.52hypothetical protein AQUCO_01000199v1 [Aquilegia c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008308NSK008308Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00740.1NO01G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576024gene_49Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100851g2gene1609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00740.1NO01G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00740 ID=NO01G00740|Name=NO01G00740|organism=Nannochloropsis oceanica|type=gene|length=607bp
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT
GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAgtacgtatgg
tggccgctctgctccctatcgaccttccaacccgactctcttccaccaag
cccccccgcttttccttcctctcggacagcacggccgtccagccatcgta
tcttttattgtctttcaatccatgcctcccgcgcgattgtttacaacagc
tattcataggacccgcttcattcctattccaatcatccatcttccccatc
ccaccctaaacccaaccagGTACGAGACACCGAGCCCGATCTGCCCTTCA
TGCGTCACCTCCTCCCCACCCTCTCCTTCCCCTGTCTTCGCTCCGCCGCC
AAAGATTTGGGATTAGACGTCGCTGCGTTTCCTGAATCACTTACTGAGGC
CTTGGCACAGGATGAGGAGTTCTTGAAGGCATTGCACAAGACGCTGTTTG
ACGTGCATGTGCTGGAAGGGGCGCTGATCTGTCCGGAGACGGGAAGGCGA
TTTTCCATCGTCGGGGGTGTTGTCGATATGATGATGAAGGACGAGGAGGT
GGTTTGA
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protein sequence of NO01G00740.1

>NO01G00740.1-protein ID=NO01G00740.1-protein|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSF
PCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALI
CPETGRRFSIVGGVVDMMMKDEEVV*
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Synonyms
Publications