NO01G00740, NO01G00740 (gene) Nannochloropsis oceanica

Overview
NameNO01G00740
Unique NameNO01G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length607
Alignment locationchr1:189009..189615 +

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Properties
Property NameValue
DescriptionMultifunctional methyltransferase subunit TRM112 homolog A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:189009..189615 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: EWM29006.1 (Uncharacterized protein Naga_100851g2 [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 2.700e-48
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLLSHNVLRNTAKGVV+G+PLKIEA QI+VRDTEPDL F+RHLLPT+SFP LRSAA+DLGLD AAFP S +  L +DE FL+ALHK LFDVHVLEG+L+CPE+GRRFSI GG+ DMM+ DEE+
Sbjct:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: EWM29320.1 (TRM112-like protein [Nannochloropsis gaditana])

HSP 1 Score: 141.4 bits (355), Expect = 2.000e-30
Identity = 63/124 (50.81%), Postives = 96/124 (77.42%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRL++HN+L++  KGV+ GFPL+IEA+++EV++TE +  F+++LLP + +P LR A+K+LG+D    PE + EA   D+ FL+ +HK L DVHVLEG+L+CPETGRRF I  G+ +M++ ++EV
Sbjct:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMD--ELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: CBJ27326.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.6 bits (327), Expect = 3.500e-27
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HNVLR+  KGVVEG+PL+IEA  +++ ++E    F++H+  TL +  L  AA ++G+   + P +LT  L +D  FL+ALH+ L D+HV+EG L+CPETGRRF I  GV ++M  ++EV
Sbjct:    1 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAAAEVGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLMCTEDEV 124
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: GAQ90207.1 (hypothetical protein KFL_006130040 [Klebsormidium nitens])

HSP 1 Score: 122.1 bits (305), Expect = 1.200e-24
Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L    KGV +G+PLKIEA + E ++T+ +  F+RH+ P L +  LR AA  LGL+    PE +  +  +DE+FL+  H  L ++H+ EGAL+CPETGRRF +  G+ +M++ ++EV
Sbjct:    1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLE--ELPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNMLLNEDEV 122
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: GBG29818.1 (Multifunctional methyltransferase subunit TRM112-like protein [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 117.5 bits (293), Expect = 3.100e-23
Identity = 55/124 (44.35%), Postives = 86/124 (69.35%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            M+LL+HN+L+   KGV  G+PLKIE    E+R+TE +  F++ ++  L +P  R+AA  LG +    PE++T  L + E+FLK  H+ L +V V+EGALICPE+GR+F+I  G+ +M++ ++EV
Sbjct:    1 MKLLTHNMLKCNVKGVNNGYPLKIEVTTKEIRETEMNPAFLQGIVEKLEWPVFRAAAAQLGEE--GLPEAVTPELLEQEDFLKKFHRALLEVVVVEGALICPESGRKFTITNGIPNMLLNEDEV 122
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_020257429.1 (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Asparagus officinalis] >ONK75555.1 uncharacterized protein A4U43_C03F18120 [Asparagus officinalis])

HSP 1 Score: 116.7 bits (291), Expect = 5.200e-23
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L +  KGV  G+PL+IEA Q   ++ + +  F+R++ P + +P L SAAK LG      PE    ++ + +EFL+  H  L +VHV EGAL+CPETGRRF +  G+ +M++ ++EV
Sbjct:    1 MRLLTHNMLASNIKGVTSGYPLRIEAHQSAAKEADFNADFLRNVFPKIDWPALVSAAKTLG--YGDLPEEAEPSMLESDEFLRRFHHALLEVHVEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_024386428.1 (multifunctional methyltransferase subunit TRM112 homolog A-like [Physcomitrella patens] >PNR46478.1 hypothetical protein PHYPA_013597 [Physcomitrella patens])

HSP 1 Score: 116.3 bits (290), Expect = 6.800e-23
Identity = 54/124 (43.55%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L    KGV +GFPL IE  ++E +++E +  F+RH+ P L +     AA+ +G  V   P+ +   +  D+EFL+  H  L +VH+ EGALICPETGRRF +  GV +M++ ++EV
Sbjct:    1 MRLLTHNMLACNIKGVTKGFPLGIEHTRLETKESELNADFLRHIFPKLDWKAFHEAAQSVG--VNNIPDQVEPVMLDDDEFLRKFHHALLEVHLEEGALICPETGRRFPVTKGVPNMLLNEDEV 122
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: XP_011396710.1 (TRM112-like protein [Auxenochlorella protothecoides] >KFM23832.1 TRM112-like protein [Auxenochlorella protothecoides])

HSP 1 Score: 116.3 bits (290), Expect = 6.800e-23
Identity = 52/123 (42.28%), Postives = 83/123 (67.48%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEE 124
            M+L++HN+L    KGV  GFP +IE  ++  R+ + D  F+RH+LP + +  LR+AA  LG   A  PE++ E   +D+ FL+ALH  L ++H+ EGAL+CPETGRRF +  G+ ++++ ++E
Sbjct:    1 MKLITHNMLSCPIKGVKNGFPFRIEVGEVATREADFDPTFLRHILPRIEYGALRAAAASLGF--ADLPETVPEGATEDDAFLQALHHALLELHLEEGALVCPETGRRFLVNKGIPNLLLHEDE 121
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: OAE22835.1 (hypothetical protein AXG93_496s1310 [Marchantia polymorpha subsp. ruderalis] >PTQ47301.1 hypothetical protein MARPO_0008s0078 [Marchantia polymorpha])

HSP 1 Score: 115.9 bits (289), Expect = 8.900e-23
Identity = 54/124 (43.55%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLL+HN+L    KGV +GFPL IE Q+++ +D + +  F+R++ P L +     AA  +GL+    PE +   + +D EFL+  H  L +VH+ EGALICPETGRRF +  GV +M++ ++EV
Sbjct:    1 MRLLTHNMLSCNIKGVTKGFPLSIEVQRLDTKDADFNPDFLRNIFPKLEWKAFHDAAVSIGLN--DIPEQVDPTMLEDHEFLQKFHHALLEVHLEEGALICPETGRRFPVTKGVPNMLLHEDEV 122
[Close]
BLAST of NO01G00740 vs. NCBI_GenBank
Match: PRW33595.1 (multifunctional methyltransferase subunit TRM112 At1g22270 [Chlorella sorokiniana])

HSP 1 Score: 114.8 bits (286), Expect = 2.000e-22
Identity = 48/110 (43.64%), Postives = 81/110 (73.64%), Query Frame = 0 
Query:   14 KGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEE 124
            KGV  G+PLK+EA+++E R+ + +  F+RH+ P +++P LR AA  +G  V+  PES +E L +D++FLK  H  L +VH+ EG+L+CPETGR+F + GG+ +++++++E
Sbjct:    7 KGVQNGYPLKVEAEKVETREMDFEPDFLRHIFPRINWPALREAAAAMG--VSDLPESASEELLEDDDFLKKFHHALLEVHLEEGSLVCPETGRKFPVSGGIPNLLLQEDE 114
The following BLAST results are available for this feature:
BLAST of NO01G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29006.12.700e-4876.61Uncharacterized protein Naga_100851g2 [Nannochloro... [more]
EWM29320.12.000e-3050.81TRM112-like protein [Nannochloropsis gaditana][more]
CBJ27326.13.500e-2748.39conserved unknown protein [Ectocarpus siliculosus][more]
GAQ90207.11.200e-2445.16hypothetical protein KFL_006130040 [Klebsormidium ... [more]
GBG29818.13.100e-2344.35Multifunctional methyltransferase subunit TRM112-l... [more]
XP_020257429.15.200e-2343.55multifunctional methyltransferase subunit TRM112-l... [more]
XP_024386428.16.800e-2343.55multifunctional methyltransferase subunit TRM112 h... [more]
XP_011396710.16.800e-2342.28TRM112-like protein [Auxenochlorella protothecoide... [more]
OAE22835.18.900e-2343.55hypothetical protein AXG93_496s1310 [Marchantia po... [more]
PRW33595.12.000e-2243.64multifunctional methyltransferase subunit TRM112 A... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008308NSK008308Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00740.1NO01G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576024gene_49Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100851g2gene1609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00740.1NO01G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00740 ID=NO01G00740|Name=NO01G00740|organism=Nannochloropsis oceanica|type=gene|length=607bp
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT
GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAgtacgtatgg
tggccgctctgctccctatcgaccttccaacccgactctcttccaccaag
cccccccgcttttccttcctctcggacagcacggccgtccagccatcgta
tcttttattgtctttcaatccatgcctcccgcgcgattgtttacaacagc
tattcataggacccgcttcattcctattccaatcatccatcttccccatc
ccaccctaaacccaaccagGTACGAGACACCGAGCCCGATCTGCCCTTCA
TGCGTCACCTCCTCCCCACCCTCTCCTTCCCCTGTCTTCGCTCCGCCGCC
AAAGATTTGGGATTAGACGTCGCTGCGTTTCCTGAATCACTTACTGAGGC
CTTGGCACAGGATGAGGAGTTCTTGAAGGCATTGCACAAGACGCTGTTTG
ACGTGCATGTGCTGGAAGGGGCGCTGATCTGTCCGGAGACGGGAAGGCGA
TTTTCCATCGTCGGGGGTGTTGTCGATATGATGATGAAGGACGAGGAGGT
GGTTTGA
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protein sequence of NO01G00740.1

>NO01G00740.1-protein ID=NO01G00740.1-protein|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSF
PCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALI
CPETGRRFSIVGGVVDMMMKDEEVV*
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Synonyms
Publications