NO01G00660, NO01G00660 (gene) Nannochloropsis oceanica

Overview
NameNO01G00660
Unique NameNO01G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2138
Alignment locationchr1:169558..171695 -

Link to JBrowse

Properties
Property NameValue
DescriptionPterin-4-alpha-carbinolamine dehydratase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:169558..171695 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
Vocabulary: Biological Process
TermDefinition
GO:0006729tetrahydrobiopterin biosynthetic process
GO:0006729tetrahydrobiopterin biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036428PCD_sf
IPR001533Trans/pterin_deHydtase
Homology
BLAST of NO01G00660 vs. NCBI_GenBank
Match: EWM29000.1 (pterin-4-alpha-carbinolamine dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 1.200e-33
Identity = 77/127 (60.63%), Postives = 91/127 (71.65%), Query Frame = 0
Query:    6 ILRPPTAFQRIRAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTMDLPGWADVKG--RDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDALV 131
            +L   +AF  +   + T  SQ       +++P LS QA   AL  DL GW DVKG  RDA+EKT++F DF EAWGFMSR ALLAE+H+HHPEW NVYNKVHVVLTTHDAGGVSQKDV + KAMD +V
Sbjct:   22 LLHGTSAFHNVHCNV-TRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIV 147          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: XP_005853477.1 (pterin-4-alpha-carbinolamine dehydratase, partial [Nannochloropsis gaditana CCMP526] >EKU22883.1 pterin-4-alpha-carbinolamine dehydratase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.0 bits (380), Expect = 2.800e-33
Identity = 76/127 (59.84%), Postives = 90/127 (70.87%), Query Frame = 0
Query:    6 ILRPPTAFQRIRAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTMDLPGWADVKG--RDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDALV 131
            +L   +AF  +   + T  SQ       +++P LS QA   AL  DL GW DVKG  RDA+EKT++F DF EAWGFMSR ALLAE+H+HHPEW NVYNKVHV+LTTHDAGGVSQKDV + KAMD  V
Sbjct:   39 LLHGTSAFHNVHCNV-TRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVILTTHDAGGVSQKDVTLAKAMDTFV 164          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_019015651.1 (4a-hydroxytetrahydrobiopterin dehydratase [Elioraea tepidiphila])

HSP 1 Score: 129.4 bits (324), Expect = 8.600e-27
Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 0
Query:   36 VPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            V +LS +A +  L   LPGWA V+GRDA+ + + F+DF EAW FMSR ALLAEKHDHHPEWFNV+N+V +VL+THDAGG+S +DV + +A+DA+
Sbjct:    2 VAKLS-EAERAGLAQALPGWALVEGRDAIRRAFRFRDFPEAWAFMSRVALLAEKHDHHPEWFNVWNRVEIVLSTHDAGGLSMRDVTLARAIDAI 94          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_104830534.1 (4a-hydroxytetrahydrobiopterin dehydratase [Marinicaulis flavus] >PQA87347.1 4a-hydroxytetrahydrobiopterin dehydratase [Marinicaulis flavus])

HSP 1 Score: 129.0 bits (323), Expect = 1.100e-26
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0
Query:   33 PKKVPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDA 129
            P+ V +LSP+A + A   D PGWA V+ RDA++K++ F DF EAWGFM R AL AEK DHHPEWFNVYN+V + LTTHDAGG+S++DVA+   +DA
Sbjct:   19 PRMVEKLSPEA-RAAFLKDRPGWAPVEDRDAVKKSFAFDDFNEAWGFMCRVALAAEKADHHPEWFNVYNRVEITLTTHDAGGLSERDVALAGFIDA 113          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_024515076.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. Tv2a-2])

HSP 1 Score: 128.3 bits (321), Expect = 1.900e-26
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   36 VPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            V RLS +A K AL   L GW +V GR+A+ +T++FKDF EA+GFMSRAAL+AEKHDHHPEW NVY  V VVL THDAGGV+++DVA+ KAM+A+
Sbjct:    2 VERLSAEARKSAL-KTLSGWTEVAGREAIARTFVFKDFNEAFGFMSRAALVAEKHDHHPEWRNVYKTVEVVLATHDAGGVTERDVALAKAMNAI 94          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_061023815.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. CCH5-F6])

HSP 1 Score: 128.3 bits (321), Expect = 1.900e-26
Identity = 59/92 (64.13%), Postives = 77/92 (83.70%), Query Frame = 0
Query:   38 RLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            RLS +A K A+  +LPGW DV+GRDA+ KT++F+DF EA+GFM+RAAL+AEK DHHPEW NVY  V VVL+THDAGGV+ +D+A+ KAM+A+
Sbjct:    4 RLSAEARKQAMG-ELPGWTDVQGRDAIAKTFVFRDFNEAFGFMTRAALVAEKMDHHPEWRNVYKTVEVVLSTHDAGGVTARDIALAKAMNAI 94          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_072818293.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium erythrophlei] >SHN74172.1 pterin-4-alpha-carbinolamine dehydratase [Bradyrhizobium erythrophlei])

HSP 1 Score: 127.9 bits (320), Expect = 2.500e-26
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 0
Query:   36 VPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDALVVE 133
            V RL+ +A K AL  +L GW +V GRDA+E+T++FKDF EA+GFM RAAL+AEK DHHPEW NVY  V VVL+THDAGGV+Q+D+ + KAM+A+  +
Sbjct:    2 VERLTAEARKTAL-KELSGWTEVAGRDAIERTFVFKDFNEAFGFMGRAALVAEKSDHHPEWRNVYKTVEVVLSTHDAGGVTQRDIELAKAMNAIAAQ 97          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_024511192.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. ARR65])

HSP 1 Score: 127.1 bits (318), Expect = 4.300e-26
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 0
Query:   36 VPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            V RL+ +A K  L   LPGWA+V+GR+A+ +T++FKDF EA+GFM+RAAL+AEKHDHHPEW NVY  V VVL+THDAGGV+++D+ + KAM+A+
Sbjct:    2 VNRLTAEARKSEL-KGLPGWAEVQGREAITRTFVFKDFNEAFGFMARAALVAEKHDHHPEWRNVYKTVEVVLSTHDAGGVTERDIKLAKAMNAI 94          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_057862324.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium lablabi] >KRR17343.1 pterin-4-alpha-carbinolamine dehydratase [Bradyrhizobium lablabi])

HSP 1 Score: 127.1 bits (318), Expect = 4.300e-26
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 0
Query:   36 VPRLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            V RLSP+A K AL  +L GW+++ GR+A+++T+ FKDF EA+GFMSRAAL+AEK+DHHPEW NVY  V VVL THDAGGV+++D+ + KAM+A+
Sbjct:    2 VERLSPEARKSALA-ELSGWSELSGREAIQRTFTFKDFNEAFGFMSRAALVAEKNDHHPEWKNVYRTVEVVLATHDAGGVTRRDIDLAKAMNAI 94          
BLAST of NO01G00660 vs. NCBI_GenBank
Match: WP_100233156.1 (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. INPA54B] >PJG53826.1 4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. INPA54B])

HSP 1 Score: 127.1 bits (318), Expect = 4.300e-26
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 0
Query:   38 RLSPQAVKVALTMDLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDAL 130
            RLS +A + AL   LPGW DV+GRDA+ KT++FKDF EA+GFM+RAAL+AEK DHHPEW NVY  V VVL+THDAGGV+ +D+A+ KAM+A+
Sbjct:    4 RLSAEARQQALG-GLPGWTDVQGRDAIGKTFVFKDFNEAFGFMARAALVAEKMDHHPEWRNVYKTVEVVLSTHDAGGVTARDIALAKAMNAI 94          
The following BLAST results are available for this feature:
BLAST of NO01G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29000.11.200e-3360.63pterin-4-alpha-carbinolamine dehydratase [Nannochl... [more]
XP_005853477.12.800e-3359.84pterin-4-alpha-carbinolamine dehydratase, partial ... [more]
WP_019015651.18.600e-2760.644a-hydroxytetrahydrobiopterin dehydratase [Eliorae... [more]
WP_104830534.11.100e-2660.424a-hydroxytetrahydrobiopterin dehydratase [Marinic... [more]
WP_024515076.11.900e-2664.894a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
WP_061023815.11.900e-2664.134a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
WP_072818293.12.500e-2660.824a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
WP_024511192.14.300e-2661.704a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
WP_057862324.14.300e-2661.704a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
WP_100233156.14.300e-2665.224a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008313NSK008313Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00660.1NO01G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576005gene_42Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100373g9gene1615Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00660.1NO01G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00660 ID=NO01G00660|Name=NO01G00660|organism=Nannochloropsis oceanica|type=gene|length=2138bp
GGGGAATGAGCGCCCGCTGCCCTGAGAAAAAGGAGGGGGAGGGGGGAGAG
ACGGAGGGAATGAGTTATGAAGTCGAGGTGGAGGTGATGCAGTCATCCCC
ACTTCTCTTGGATCCACCTATGCGACAACAAGAGCAACCGCATAAATGTG
CCTTCTCTGCTATCTGTGTGGAGTGTGGTGGTATGGAGAGACCACGGAAG
CCCATGTCCGTGCCCAGGAAGGAGGGAATGCGGCCACTTATCGGCCAGAT
GAGTTGACCACAATATCTTATCCTTCATTCCTGACCGCCCATGGATTTTC
CTCCTATTCTCCCACATGTGTTTGTGGTAACAGTGGCGAGGGTGGAGGGT
GGTAGTAGCACAAGGAGGAAGAGGATTGAGGAATGGAAGAGGAGGATAGC
CAAGAATGTGGCCGCCACCACTTCTCAAGCAGCGATTGATCAACTCAGAT
AACTGAAGACCGCAACCGAACACAATGGCCGGGACCACAGACACAGACAC
AGTCAGCTGGAGTGGACGCGTGTGATGTACAAGTCTTCAGTGCTGGGGCA
TTGTATGGCTCGTCGCCTGGCATGAAAGACAAAAAAGCAAGAAGCTGCAC
GATTCCACACCGTGAGAGTCACTGCTTTAAATTTTTTACACGACGTCACC
GGTGGCCTTCCCACACGCGCGCGCCTTTTTCTGGGATCCTTGCGCCCGTA
TTCCTATGTTTTTGTTTCACAGCTCGATTCATCACTTAAAGATCGTCTCA
TCCTCCTACCACTGCAAGAGTAAGGTTCGAAAATGCAGCATCGGTGCATC
CTCCGCCCTCCCACGGCATTCCAACGCATCAGGGCCTTCCTCAGCACCAG
CACCAGCCAATCAACACCCCCAACCCCACCGAAAAAGGTGCCGCGTCTGT
CCCCGCAAGCCGTGAAGGTAGCCTTGACCATGGACTTGCCTGGCTGGGCG
GATGTGAAGGGACGCGATGCCTTGGAAAAGACGTACCTCTTTAAAGACTT
CGGGGAGgtaagaacaggagggaggggttcaagatggattgtggacgttc
gaatggagtaagaggatttggtttatacaggaaccgatctctgacttact
ctgacaccctcgccatccttccttcttcctcctttcctccctcaccttcg
atccagGCCTGGGGCTTCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGCA
CGACCACCACCCGGAATGGTTCAACGTCTACAACAAAGTGCATGTGGTCT
TAACCACACATGATGCTGGGGGGGTCAGTCAGAAGGACGTTGCGATGGGT
AAAGCCATGGATGCTCTGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGAG
AGTTGAGTAGAGAGTAGTGCTAATGTGCATATGCAGAGTGAGGAGACAAT
AAACTTATTGTGAATAGAATCGAAGGCAAGCAGAAAAGAAGAAAAAAGAA
AAGAAGGAGGACAAACCCAGAAAAAAATAAGAAGCTGGAGAAGAAGGGTT
ATAGTGACTTATCTCACCACTTCACTACAGTGTAAGACGCAGTGCTTTGA
CTTGTTTTCTTTACCTGCTCCTTTCCCACTCCTGCCCCCCCCTCACCCTC
AACAACACGACCAATATACGTTCCGATACGGATAGCGACACACGTCCCTA
GACCTTTCCCCCCCCTCCTCCTCTTCCTCCTCTTTTTTCGCCCACACCGC
AGGCCGCCACTCCTTCCCCATCAAGCTCGACCATATCCCATCCCTCACAC
AACAGAAGGACACAACATTCATGCACAAGCCCTCACTGAATGGAAGGTCA
AATACATCACCGTCCCCTCCCTCTCCCCTTCCTCCTCCTCCTCCCTCCTC
CTCTCCTCCATGTCTTCGTAGATACACAATTCTCTCAGGCCCTTTGGTAA
ATTCGTAGGACGTGAGGGAGGAGACAGCAAGGAAGATGTGAAGGACGAGA
AGGAGGAAGGCTATGCCGTACAAGCACCAGAGGAGGAGGGAGAGGGAGAG
GGGGAGGAGGTTGGCAAGGACGTAGTCGACCAAGTCAGGGCTTCCTCTAG
GAGGGGAGGGAAGGGGGGAAAGAGAGAGAGGGGAGAAATGAGATGAATCG
GCTCCCATCGCGTCCATTAAGGGAGGTTCCCAACGTTT
back to top

protein sequence of NO01G00660.1

>NO01G00660.1-protein ID=NO01G00660.1-protein|Name=NO01G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MQHRCILRPPTAFQRIRAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTM
DLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVY
NKVHVVLTTHDAGGVSQKDVAMGKAMDALVVEKPRSSS*
back to top
Synonyms
Publications